RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 TATP17735 454 aaPredicted RBP17.59■□□□□ 0.41
CLK3-224ENST00000568605 EIF4A2Q14240 407 aaKnown RBP17.58■□□□□ 0.4
CLK3-224ENST00000568605 USHBP1Q8N6Y0 703 aa17.58■□□□□ 0.4
CLK3-224ENST00000568605 TOGARAM1Q9Y4F4 1720 aa17.58■□□□□ 0.4
CLK3-224ENST00000568605 PARD3Q8TEW0 1356 aa17.57■□□□□ 0.4
CLK3-224ENST00000568605 CNGB1Q14028 1251 aaPredicted RBP17.57■□□□□ 0.4
CLK3-224ENST00000568605 MARCH10Q8NA82 808 aaPredicted RBP17.57■□□□□ 0.4
CLK3-224ENST00000568605 IGSF1Q8N6C5 1336 aa17.56■□□□□ 0.4
CLK3-224ENST00000568605 PCDH11XQ9BZA7 1347 aa17.56■□□□□ 0.4
CLK3-224ENST00000568605 PCDH11YQ9BZA8 1340 aa17.56■□□□□ 0.4
CLK3-224ENST00000568605 TRIM37O94972 964 aa17.56■□□□□ 0.4
CLK3-224ENST00000568605 COL3A1P02461 1466 aaPredicted RBP17.56■□□□□ 0.4
CLK3-224ENST00000568605 LY75O60449 1722 aa17.55■□□□□ 0.4
CLK3-224ENST00000568605 MTHFSP49914 203 aa17.55■□□□□ 0.4
CLK3-224ENST00000568605 ZCRB1Q8TBF4 217 aaKnown RBP17.55■□□□□ 0.4
CLK3-224ENST00000568605 SCN11AQ9UI33 1791 aa17.54■□□□□ 0.4
CLK3-224ENST00000568605 EYA1Q99502 592 aa17.54■□□□□ 0.4
CLK3-224ENST00000568605 CFAP53Q96M91 514 aa17.53■□□□□ 0.4
CLK3-224ENST00000568605 DDX54Q8TDD1 881 aaKnown RBP17.52■□□□□ 0.4
CLK3-224ENST00000568605 DEFB132Q7Z7B7 95 aa17.51■□□□□ 0.39
CLK3-224ENST00000568605 BCL11BQ9C0K0 894 aaPredicted RBP17.51■□□□□ 0.39
CLK3-224ENST00000568605 SPG7Q9UQ90 795 aa17.51■□□□□ 0.39
CLK3-224ENST00000568605 KDRP35968 1356 aa17.51■□□□□ 0.39
CLK3-224ENST00000568605 DIAPH1O60610 1272 aaKnown RBP17.5■□□□□ 0.39
CLK3-224ENST00000568605 APBA3O96018 575 aa17.5■□□□□ 0.39
CLK3-224ENST00000568605 DDX10Q13206 875 aaKnown RBP17.5■□□□□ 0.39
CLK3-224ENST00000568605 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.49■□□□□ 0.39
CLK3-224ENST00000568605 IL13P35225 146 aa17.48■□□□□ 0.39
CLK3-224ENST00000568605 TAF1LQ8IZX4 1826 aa17.48■□□□□ 0.39
CLK3-224ENST00000568605 PPP2R1AP30153 589 aa17.47■□□□□ 0.39
CLK3-224ENST00000568605 EN1Q05925 392 aaPredicted RBP17.47■□□□□ 0.39
CLK3-224ENST00000568605 QSER1Q2KHR3 1735 aa17.47■□□□□ 0.39
CLK3-224ENST00000568605 C5P01031 1676 aa17.46■□□□□ 0.39
CLK3-224ENST00000568605 SULT6B1Q6IMI4 303 aa17.46■□□□□ 0.39
CLK3-224ENST00000568605 ACSBG1Q96GR2 724 aa17.46■□□□□ 0.39
CLK3-224ENST00000568605 DLG5Q8TDM6 1919 aa17.46■□□□□ 0.39
CLK3-224ENST00000568605 RALBP1Q15311 655 aa17.45■□□□□ 0.38
CLK3-224ENST00000568605 AMOTQ4VCS5 1084 aa17.45■□□□□ 0.38
CLK3-224ENST00000568605 PLSCR1O15162 318 aa17.44■□□□□ 0.38
CLK3-224ENST00000568605 PLEKHO1Q53GL0 409 aaPredicted RBP17.44■□□□□ 0.38
CLK3-224ENST00000568605 IFNL2Q8IZJ0 200 aa17.44■□□□□ 0.38
CLK3-224ENST00000568605 NUDCQ9Y266 331 aa17.44■□□□□ 0.38
CLK3-224ENST00000568605 PAPPAQ13219 1627 aa17.43■□□□□ 0.38
CLK3-224ENST00000568605 ADAMTS7Q9UKP4 1686 aa17.43■□□□□ 0.38
CLK3-224ENST00000568605 ZNF316A6NFI3 1004 aaPredicted RBP17.43■□□□□ 0.38
CLK3-224ENST00000568605 EZH2Q15910 746 aaKnown RBP17.43■□□□□ 0.38
CLK3-224ENST00000568605 AEBP1Q8IUX7 1158 aa17.43■□□□□ 0.38
CLK3-224ENST00000568605 SYTL4Q96C24 671 aaPredicted RBP17.43■□□□□ 0.38
CLK3-224ENST00000568605 CAMKK2Q96RR4 588 aa17.43■□□□□ 0.38
CLK3-224ENST00000568605 TUBGCP6Q96RT7 1819 aa17.42■□□□□ 0.38
CLK3-224ENST00000568605 U2SURPO15042 1029 aaKnown RBP17.42■□□□□ 0.38
CLK3-224ENST00000568605 CYP27B1O15528 508 aa17.42■□□□□ 0.38
CLK3-224ENST00000568605 HSP90AB1P08238 724 aaKnown RBP17.42■□□□□ 0.38
CLK3-224ENST00000568605 KCNQ2O43526 872 aa17.41■□□□□ 0.38
CLK3-224ENST00000568605 ZNF831Q5JPB2 1677 aa17.41■□□□□ 0.38
CLK3-224ENST00000568605 SIPA1L3O60292 1781 aaPredicted RBP17.4■□□□□ 0.38
CLK3-224ENST00000568605 HMOX1P09601 288 aa17.4■□□□□ 0.38
CLK3-224ENST00000568605 PHKG2P15735 406 aa17.4■□□□□ 0.38
CLK3-224ENST00000568605 C1orf141Q5JVX7 400 aa17.4■□□□□ 0.38
CLK3-224ENST00000568605 ZNF530Q6P9A1 599 aaPredicted RBP17.4■□□□□ 0.38
CLK3-224ENST00000568605 NKX1-1Q15270 411 aaPredicted RBP17.39■□□□□ 0.37
CLK3-224ENST00000568605 MYBBP1AQ9BQG0 1328 aaKnown RBP17.39■□□□□ 0.37
CLK3-224ENST00000568605 PRIM1P49642 420 aaKnown RBP17.38■□□□□ 0.37
CLK3-224ENST00000568605 PTF1AQ7RTS3 328 aa17.38■□□□□ 0.37
CLK3-224ENST00000568605 LRP5O75197 1615 aa17.38■□□□□ 0.37
CLK3-224ENST00000568605 NBPF14Q5TI25 921 aa17.37■□□□□ 0.37
CLK3-224ENST00000568605 CASZ1Q86V15 1759 aa17.37■□□□□ 0.37
CLK3-224ENST00000568605 COL5A3P25940 1745 aaPredicted RBP17.36■□□□□ 0.37
CLK3-224ENST00000568605 TXNRD1Q16881 649 aa17.36■□□□□ 0.37
CLK3-224ENST00000568605 DCAF5Q96JK2 942 aa17.36■□□□□ 0.37
CLK3-224ENST00000568605 KDM6AO15550 1401 aaPredicted RBP17.36■□□□□ 0.37
CLK3-224ENST00000568605 MRC1P22897 1456 aa17.36■□□□□ 0.37
CLK3-224ENST00000568605 CICQ96RK0 1608 aaPredicted RBP17.36■□□□□ 0.37
CLK3-224ENST00000568605 TMOD3Q9NYL9 352 aa17.35■□□□□ 0.37
CLK3-224ENST00000568605 UBR2Q8IWV8 1755 aa17.35■□□□□ 0.37
CLK3-224ENST00000568605 U2AF1L5P0DN76 240 aaPredicted RBP17.34■□□□□ 0.37
CLK3-224ENST00000568605 HMGB2P26583 209 aaKnown RBP17.34■□□□□ 0.37
CLK3-224ENST00000568605 U2AF1Q01081 240 aaKnown RBP eCLIP17.34■□□□□ 0.37
CLK3-224ENST00000568605 AKAP4Q5JQC9 854 aa17.34■□□□□ 0.37
CLK3-224ENST00000568605 MPRIPQ6WCQ1 1025 aa17.34■□□□□ 0.37
CLK3-224ENST00000568605 C4BP0C0L5 1744 aa17.33■□□□□ 0.37
CLK3-224ENST00000568605 PALLDQ8WX93 1383 aa17.33■□□□□ 0.36
CLK3-224ENST00000568605 NEFMP07197 916 aa17.33■□□□□ 0.36
CLK3-224ENST00000568605 SLC27A3Q5K4L6 730 aa17.33■□□□□ 0.36
CLK3-224ENST00000568605 GAS2L2Q8NHY3 880 aa17.33■□□□□ 0.36
CLK3-224ENST00000568605 SMARCC1Q92922 1105 aaPredicted RBP17.33■□□□□ 0.36
CLK3-224ENST00000568605 UBR3Q6ZT12 1888 aa17.33■□□□□ 0.36
CLK3-224ENST00000568605 ERVV-2B6SEH9 535 aa17.32■□□□□ 0.36
CLK3-224ENST00000568605 PRKRIP1Q9H875 184 aaPredicted RBP17.32■□□□□ 0.36
CLK3-224ENST00000568605 MAP3K5Q99683 1374 aa17.31■□□□□ 0.36
CLK3-224ENST00000568605 PRKAR2BP31323 418 aa17.31■□□□□ 0.36
CLK3-224ENST00000568605 RSPH6AQ9H0K4 717 aa17.31■□□□□ 0.36
CLK3-224ENST00000568605 TJP1Q07157 1748 aa17.3■□□□□ 0.36
CLK3-224ENST00000568605 FCHSD2O94868 740 aa17.3■□□□□ 0.36
CLK3-224ENST00000568605 PNNQ9H307 717 aaKnown RBP17.3■□□□□ 0.36
CLK3-224ENST00000568605 R3HDM1Q15032 1099 aaKnown RBP17.29■□□□□ 0.36
CLK3-224ENST00000568605 MTHFSDQ2M296 383 aaKnown RBP17.29■□□□□ 0.36
CLK3-224ENST00000568605 STK32BQ9NY57 414 aa17.29■□□□□ 0.36
CLK3-224ENST00000568605 CCNL1Q9UK58 526 aaPredicted RBP17.29■□□□□ 0.36
CLK3-224ENST00000568605 PSDA5PKW4 1024 aaPredicted RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms