RNA–Protein interactions for RNA: ENST00000568316.1

RBBP6-211, Transcript of RB binding protein 6, ubiquitin ligase, human

TSL 5

Gene RBBP6, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBBP6-211	ENST00000568316	U2AF1	Q01081	240 aa	Known RBP eCLIP	33.22	■■■□□ 2.91
RBBP6-211	ENST00000568316	CCDC184	Q52MB2	194 aa		33.22	■■■□□ 2.91
RBBP6-211	ENST00000568316	TNS2	Q63HR2	1409 aa		33.21	■■■□□ 2.91
RBBP6-211	ENST00000568316	EXOC5	O00471	708 aa		33.2	■■■□□ 2.91
RBBP6-211	ENST00000568316	PDE3B	Q13370	1112 aa		33.19	■■■□□ 2.9
RBBP6-211	ENST00000568316	KRT27	Q7Z3Y8	459 aa		33.19	■■■□□ 2.9
RBBP6-211	ENST00000568316	ZCRB1	Q8TBF4	217 aa	Known RBP	33.16	■■■□□ 2.9
RBBP6-211	ENST00000568316	FAM182B	Q5T319	152 aa		33.15	■■■□□ 2.9
RBBP6-211	ENST00000568316	MRS2	Q9HD23	443 aa		33.15	■■■□□ 2.9
RBBP6-211	ENST00000568316	PKD1L3	Q7Z443	1732 aa		33.12	■■■□□ 2.89
RBBP6-211	ENST00000568316	DDX54	Q8TDD1	881 aa	Known RBP	33.12	■■■□□ 2.89
RBBP6-211	ENST00000568316	RSPH6A	Q9H0K4	717 aa		33.12	■■■□□ 2.89
RBBP6-211	ENST00000568316	SHANK3	Q9BYB0	1731 aa		33.11	■■■□□ 2.89
RBBP6-211	ENST00000568316	WDR43	Q15061	677 aa	Known RBP eCLIP	33.11	■■■□□ 2.89
RBBP6-211	ENST00000568316	MARCH10	Q8NA82	808 aa	Predicted RBP	33.11	■■■□□ 2.89
RBBP6-211	ENST00000568316	PRKAR2B	P31323	418 aa		33.1	■■■□□ 2.89
RBBP6-211	ENST00000568316	SPG7	Q9UQ90	795 aa		33.1	■■■□□ 2.89
RBBP6-211	ENST00000568316	PLEKHO1	Q53GL0	409 aa	Predicted RBP	33.08	■■■□□ 2.89
RBBP6-211	ENST00000568316	PCDH11X	Q9BZA7	1347 aa		33.07	■■■□□ 2.88
RBBP6-211	ENST00000568316	PCDH11Y	Q9BZA8	1340 aa		33.07	■■■□□ 2.88
RBBP6-211	ENST00000568316	FCHSD2	O94868	740 aa		33.07	■■■□□ 2.88
RBBP6-211	ENST00000568316	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	33.07	■■■□□ 2.88
RBBP6-211	ENST00000568316	PLEKHG2	Q9H7P9	1386 aa		33.07	■■■□□ 2.88
RBBP6-211	ENST00000568316	MIER1	Q8N108	512 aa		33.06	■■■□□ 2.88
RBBP6-211	ENST00000568316	AMOT	Q4VCS5	1084 aa		33.05	■■■□□ 2.88
RBBP6-211	ENST00000568316	CYP27B1	O15528	508 aa		33.04	■■■□□ 2.88
RBBP6-211	ENST00000568316	ZNF530	Q6P9A1	599 aa	Predicted RBP	33.03	■■■□□ 2.88
RBBP6-211	ENST00000568316	PHACTR3	Q96KR7	559 aa		33.02	■■■□□ 2.88
RBBP6-211	ENST00000568316	ADAMTS8	Q9UP79	889 aa		33.02	■■■□□ 2.88
RBBP6-211	ENST00000568316	FAM196A	Q6ZSG2	479 aa		33	■■■□□ 2.87
RBBP6-211	ENST00000568316	PNISR	Q8TF01	805 aa	Known RBP	33	■■■□□ 2.87
RBBP6-211	ENST00000568316	MTHFSD	Q2M296	383 aa	Known RBP	32.99	■■■□□ 2.87
RBBP6-211	ENST00000568316	PHKG2	P15735	406 aa		32.98	■■■□□ 2.87
RBBP6-211	ENST00000568316	IFNL2	Q8IZJ0	200 aa		32.98	■■■□□ 2.87
RBBP6-211	ENST00000568316	PLEKHF1	Q96S99	279 aa		32.98	■■■□□ 2.87
RBBP6-211	ENST00000568316	CCER2	I3L3R5	266 aa		32.97	■■■□□ 2.87
RBBP6-211	ENST00000568316	CCDC146	Q8IYE0	955 aa		32.97	■■■□□ 2.87
RBBP6-211	ENST00000568316	PNN	Q9H307	717 aa	Known RBP	32.97	■■■□□ 2.87
RBBP6-211	ENST00000568316	NEFM	P07197	916 aa		32.96	■■■□□ 2.87
RBBP6-211	ENST00000568316	C1orf141	Q5JVX7	400 aa		32.96	■■■□□ 2.87
RBBP6-211	ENST00000568316	MAPK8IP3	Q9UPT6	1336 aa		32.94	■■■□□ 2.86
RBBP6-211	ENST00000568316	BCL9	O00512	1426 aa		32.94	■■■□□ 2.86
RBBP6-211	ENST00000568316	GAS2L2	Q8NHY3	880 aa		32.93	■■■□□ 2.86
RBBP6-211	ENST00000568316	ACSBG1	Q96GR2	724 aa		32.93	■■■□□ 2.86
RBBP6-211	ENST00000568316	NKX1-1	Q15270	411 aa	Predicted RBP	32.9	■■■□□ 2.86
RBBP6-211	ENST00000568316	AKAP4	Q5JQC9	854 aa		32.9	■■■□□ 2.86
RBBP6-211	ENST00000568316	FAM9B	Q8IZU0	186 aa		32.9	■■■□□ 2.86
RBBP6-211	ENST00000568316	DOT1L	Q8TEK3	1739 aa		32.9	■■■□□ 2.86
RBBP6-211	ENST00000568316	TRIM37	O94972	964 aa		32.89	■■■□□ 2.86
RBBP6-211	ENST00000568316	HSP90AB1	P08238	724 aa	Known RBP	32.88	■■■□□ 2.85
RBBP6-211	ENST00000568316	RUNDC1	Q96C34	613 aa		32.88	■■■□□ 2.85
RBBP6-211	ENST00000568316	SBF2	Q86WG5	1849 aa		32.88	■■■□□ 2.85
RBBP6-211	ENST00000568316	MPRIP	Q6WCQ1	1025 aa		32.87	■■■□□ 2.85
RBBP6-211	ENST00000568316	TOGARAM1	Q9Y4F4	1720 aa		32.87	■■■□□ 2.85
RBBP6-211	ENST00000568316	KDM6A	O15550	1401 aa	Predicted RBP	32.86	■■■□□ 2.85
RBBP6-211	ENST00000568316	MAP3K5	Q99683	1374 aa		32.86	■■■□□ 2.85
RBBP6-211	ENST00000568316	KCNQ2	O43526	872 aa		32.86	■■■□□ 2.85
RBBP6-211	ENST00000568316	PTF1A	Q7RTS3	328 aa		32.86	■■■□□ 2.85
RBBP6-211	ENST00000568316	SYTL4	Q96C24	671 aa	Predicted RBP	32.85	■■■□□ 2.85
RBBP6-211	ENST00000568316	DCAF5	Q96JK2	942 aa		32.85	■■■□□ 2.85
RBBP6-211	ENST00000568316	KAT6B	Q8WYB5	2073 aa		32.84	■■■□□ 2.85
RBBP6-211	ENST00000568316	PRIM1	P49642	420 aa	Known RBP	32.84	■■■□□ 2.85
RBBP6-211	ENST00000568316	NFE2L2	Q16236	605 aa		32.84	■■■□□ 2.85
RBBP6-211	ENST00000568316	NHS	Q6T4R5	1651 aa		32.84	■■■□□ 2.85
RBBP6-211	ENST00000568316	GNAT3	A8MTJ3	354 aa		32.83	■■■□□ 2.85
RBBP6-211	ENST00000568316	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.82	■■■□□ 2.84
RBBP6-211	ENST00000568316	BCL11B	Q9C0K0	894 aa	Predicted RBP	32.81	■■■□□ 2.84
RBBP6-211	ENST00000568316	RRP7A	Q9Y3A4	280 aa	Known RBP	32.81	■■■□□ 2.84
RBBP6-211	ENST00000568316	LGR6	Q9HBX8	967 aa		32.8	■■■□□ 2.84
RBBP6-211	ENST00000568316	RNMT	O43148	476 aa	Known RBP	32.79	■■■□□ 2.84
RBBP6-211	ENST00000568316	TMPO	P42166	694 aa	Known RBP	32.79	■■■□□ 2.84
RBBP6-211	ENST00000568316	TNS1	Q9HBL0	1735 aa	Known RBP	32.79	■■■□□ 2.84
RBBP6-211	ENST00000568316	SCN11A	Q9UI33	1791 aa		32.78	■■■□□ 2.84
RBBP6-211	ENST00000568316	EP400	Q96L91	3159 aa		32.77	■■■□□ 2.84
RBBP6-211	ENST00000568316	DLG5	Q8TDM6	1919 aa		32.77	■■■□□ 2.84
RBBP6-211	ENST00000568316	APAF1	O14727	1248 aa		32.77	■■■□□ 2.84
RBBP6-211	ENST00000568316	SF3B2	Q13435	895 aa	Known RBP	32.77	■■■□□ 2.84
RBBP6-211	ENST00000568316	NEUROD2	Q15784	382 aa		32.77	■■■□□ 2.84
RBBP6-211	ENST00000568316	SENP3-EIF4A1	A0A087X0R7	540 aa		32.76	■■■□□ 2.83
RBBP6-211	ENST00000568316	RIPK4	P57078	832 aa		32.76	■■■□□ 2.83
RBBP6-211	ENST00000568316	IL17RE	Q8NFR9	667 aa		32.76	■■■□□ 2.83
RBBP6-211	ENST00000568316	RTF1	Q92541	710 aa	Known RBP	32.76	■■■□□ 2.83
RBBP6-211	ENST00000568316	ITGB4	P16144	1822 aa		32.76	■■■□□ 2.83
RBBP6-211	ENST00000568316	ERVV-2	B6SEH9	535 aa		32.75	■■■□□ 2.83
RBBP6-211	ENST00000568316	ADAMTS7	Q9UKP4	1686 aa		32.75	■■■□□ 2.83
RBBP6-211	ENST00000568316	VIRMA	Q69YN4	1812 aa	Known RBP	32.74	■■■□□ 2.83
RBBP6-211	ENST00000568316	APBA3	O96018	575 aa		32.74	■■■□□ 2.83
RBBP6-211	ENST00000568316	CABP4	P57796	275 aa		32.74	■■■□□ 2.83
RBBP6-211	ENST00000568316	DCTN1	Q14203	1278 aa		32.74	■■■□□ 2.83
RBBP6-211	ENST00000568316	MCM10	Q7L590	875 aa		32.74	■■■□□ 2.83
RBBP6-211	ENST00000568316	CCDC125	Q86Z20	511 aa		32.74	■■■□□ 2.83
RBBP6-211	ENST00000568316	TMOD3	Q9NYL9	352 aa		32.74	■■■□□ 2.83
RBBP6-211	ENST00000568316	BTAF1	O14981	1849 aa		32.74	■■■□□ 2.83
RBBP6-211	ENST00000568316	PIGB	Q92521	554 aa		32.72	■■■□□ 2.83
RBBP6-211	ENST00000568316	HTATSF1	O43719	755 aa	Known RBP	32.71	■■■□□ 2.83
RBBP6-211	ENST00000568316	MRC1	P22897	1456 aa		32.7	■■■□□ 2.83
RBBP6-211	ENST00000568316	NFATC2IP	Q8NCF5	419 aa		32.7	■■■□□ 2.83
RBBP6-211	ENST00000568316	DEFB132	Q7Z7B7	95 aa		32.69	■■■□□ 2.82
RBBP6-211	ENST00000568316	THUMPD2	Q9BTF0	503 aa	Known RBP	32.69	■■■□□ 2.82
RBBP6-211	ENST00000568316	SLC52A2	Q9HAB3	445 aa		32.69	■■■□□ 2.82

Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms