RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 USP19O94966 1318 aa9.06□□□□□ -0.96
SMG1-215ENST00000568239 CHRNA2Q15822 529 aa9.06□□□□□ -0.96
SMG1-215ENST00000568239 TWISTNBQ3B726 338 aaPredicted RBP9.06□□□□□ -0.96
SMG1-215ENST00000568239 GNAT3A8MTJ3 354 aa9.06□□□□□ -0.96
SMG1-215ENST00000568239 ZNF853P0CG23 659 aa9.06□□□□□ -0.96
SMG1-215ENST00000568239 CSB-PGBD3P0DP91 1061 aa9.06□□□□□ -0.96
SMG1-215ENST00000568239 RLBP1P12271 317 aa9.06□□□□□ -0.96
SMG1-215ENST00000568239 C8orf58Q8NAV2 365 aa9.06□□□□□ -0.96
SMG1-215ENST00000568239 NOB1Q9ULX3 412 aaKnown RBP9.06□□□□□ -0.96
SMG1-215ENST00000568239 SPATA31A3Q5VYP0 1347 aa9.06□□□□□ -0.96
SMG1-215ENST00000568239 VAMP4O75379 141 aa9.05□□□□□ -0.96
SMG1-215ENST00000568239 KRT24Q2M2I5 525 aa9.05□□□□□ -0.96
SMG1-215ENST00000568239 PPP4R3CPQ6ZMV5 832 aa9.05□□□□□ -0.96
SMG1-215ENST00000568239 NLRP2Q9NX02 1062 aa9.05□□□□□ -0.96
SMG1-215ENST00000568239 TSPYL4Q9UJ04 414 aa9.05□□□□□ -0.96
SMG1-215ENST00000568239 TNS3Q68CZ2 1445 aa9.05□□□□□ -0.96
SMG1-215ENST00000568239 SLIT3O75094 1523 aa9.05□□□□□ -0.96
SMG1-215ENST00000568239 DZIP1LQ8IYY4 767 aaKnown RBP9.05□□□□□ -0.96
SMG1-215ENST00000568239 RGPD2P0DJD1 1756 aa9.04□□□□□ -0.96
SMG1-215ENST00000568239 ALS2Q96Q42 1657 aa9.04□□□□□ -0.96
SMG1-215ENST00000568239 TRIM27P14373 513 aa9.04□□□□□ -0.96
SMG1-215ENST00000568239 ATF7IPQ6VMQ6 1270 aa9.04□□□□□ -0.96
SMG1-215ENST00000568239 CHL1O00533 1208 aa9.03□□□□□ -0.96
SMG1-215ENST00000568239 IPO8O15397 1037 aaKnown RBP9.03□□□□□ -0.96
SMG1-215ENST00000568239 MED1Q15648 1581 aaPredicted RBP9.03□□□□□ -0.96
SMG1-215ENST00000568239 ALDH1L2Q3SY69 923 aa9.03□□□□□ -0.96
SMG1-215ENST00000568239 ITPRIPQ8IWB1 547 aa9.03□□□□□ -0.96
SMG1-215ENST00000568239 PXDNQ92626 1479 aa9.03□□□□□ -0.96
SMG1-215ENST00000568239 ERBB3P21860 1342 aa9.03□□□□□ -0.96
SMG1-215ENST00000568239 KIF16BQ96L93 1317 aa9.03□□□□□ -0.96
SMG1-215ENST00000568239 MS4A1P11836 297 aa9.03□□□□□ -0.96
SMG1-215ENST00000568239 MAP3K5Q99683 1374 aa9.03□□□□□ -0.96
SMG1-215ENST00000568239 RGPD5Q99666 1765 aa9.03□□□□□ -0.96
SMG1-215ENST00000568239 PLEKHO1Q53GL0 409 aaPredicted RBP9.03□□□□□ -0.96
SMG1-215ENST00000568239 ZNF530Q6P9A1 599 aaPredicted RBP9.03□□□□□ -0.96
SMG1-215ENST00000568239 IL17REQ8NFR9 667 aa9.03□□□□□ -0.96
SMG1-215ENST00000568239 KIAA0232Q92628 1395 aa9.03□□□□□ -0.96
SMG1-215ENST00000568239 PIAS4Q8N2W9 510 aaPredicted RBP9.02□□□□□ -0.97
SMG1-215ENST00000568239 ZNF428Q96B54 188 aa9.02□□□□□ -0.97
SMG1-215ENST00000568239 PRDM11Q9NQV5 511 aa9.02□□□□□ -0.97
SMG1-215ENST00000568239 HTATSF1O43719 755 aaKnown RBP9.02□□□□□ -0.97
SMG1-215ENST00000568239 MVPQ14764 893 aaKnown RBP9.02□□□□□ -0.97
SMG1-215ENST00000568239 C1orf141Q5JVX7 400 aa9.02□□□□□ -0.97
SMG1-215ENST00000568239 SKAP1Q86WV1 359 aa9.02□□□□□ -0.97
SMG1-215ENST00000568239 CRB1P82279 1406 aa9.02□□□□□ -0.97
SMG1-215ENST00000568239 MPRIPQ6WCQ1 1025 aa9.01□□□□□ -0.97
SMG1-215ENST00000568239 RAPGEF4Q8WZA2 1011 aa9.01□□□□□ -0.97
SMG1-215ENST00000568239 SOS2Q07890 1332 aaPredicted RBP9.01□□□□□ -0.97
SMG1-215ENST00000568239 MRPL50Q8N5N7 158 aaKnown RBP9.01□□□□□ -0.97
SMG1-215ENST00000568239 LGR6Q9HBX8 967 aa9.01□□□□□ -0.97
SMG1-215ENST00000568239 AMOTQ4VCS5 1084 aa9□□□□□ -0.97
SMG1-215ENST00000568239 CENPQQ7L2Z9 268 aaPredicted RBP9□□□□□ -0.97
SMG1-215ENST00000568239 TMEM57Q8N5G2 664 aa9□□□□□ -0.97
SMG1-215ENST00000568239 PHRF1Q9P1Y6 1649 aaKnown RBP9□□□□□ -0.97
SMG1-215ENST00000568239 TEFQ10587 303 aa9□□□□□ -0.97
SMG1-215ENST00000568239 TAF7Q15545 349 aaPredicted RBP9□□□□□ -0.97
SMG1-215ENST00000568239 NECTIN2Q92692 538 aa9□□□□□ -0.97
SMG1-215ENST00000568239 AKAP4Q5JQC9 854 aa8.99□□□□□ -0.97
SMG1-215ENST00000568239 DDX19BQ9UMR2 479 aa8.99□□□□□ -0.97
SMG1-215ENST00000568239 IGHDP01880 384 aa8.99□□□□□ -0.97
SMG1-215ENST00000568239 TOM1L2Q6ZVM7 507 aa8.99□□□□□ -0.97
SMG1-215ENST00000568239 STRN4Q9NRL3 753 aa8.99□□□□□ -0.97
SMG1-215ENST00000568239 SLC4A2P04920 1241 aa8.98□□□□□ -0.97
SMG1-215ENST00000568239 TATP17735 454 aaPredicted RBP8.98□□□□□ -0.97
SMG1-215ENST00000568239 RBM19Q9Y4C8 960 aaKnown RBP8.98□□□□□ -0.97
SMG1-215ENST00000568239 PCDHB15Q9Y5E8 787 aa8.98□□□□□ -0.97
SMG1-215ENST00000568239 ZBTB22O15209 634 aa8.98□□□□□ -0.97
SMG1-215ENST00000568239 EVA1CP58658 441 aa8.98□□□□□ -0.97
SMG1-215ENST00000568239 KDM2BQ8NHM5 1336 aa8.98□□□□□ -0.97
SMG1-215ENST00000568239 RGS3P49796 1198 aa8.97□□□□□ -0.97
SMG1-215ENST00000568239 BTBD11A6QL63 1104 aa8.97□□□□□ -0.97
SMG1-215ENST00000568239 BRPF1P55201 1214 aaPredicted RBP8.97□□□□□ -0.97
SMG1-215ENST00000568239 STK31Q9BXU1 1019 aa8.97□□□□□ -0.97
SMG1-215ENST00000568239 USP35Q9P2H5 1018 aa8.97□□□□□ -0.97
SMG1-215ENST00000568239 ARHGAP45Q92619 1136 aa8.97□□□□□ -0.97
SMG1-215ENST00000568239 API5Q9BZZ5 524 aaKnown RBP8.97□□□□□ -0.97
SMG1-215ENST00000568239 RNMTO43148 476 aaKnown RBP8.96□□□□□ -0.97
SMG1-215ENST00000568239 CPDO75976 1380 aa8.96□□□□□ -0.97
SMG1-215ENST00000568239 EIF2S2P20042 333 aaKnown RBP8.96□□□□□ -0.97
SMG1-215ENST00000568239 PIP4K2BP78356 416 aa8.96□□□□□ -0.97
SMG1-215ENST00000568239 SPG7Q9UQ90 795 aa8.96□□□□□ -0.97
SMG1-215ENST00000568239 AAMPQ13685 434 aa8.96□□□□□ -0.98
SMG1-215ENST00000568239 RWDD1Q9H446 243 aaPredicted RBP8.96□□□□□ -0.98
SMG1-215ENST00000568239 KCNQ3O43525 872 aa8.95□□□□□ -0.98
SMG1-215ENST00000568239 SLC4A10Q6U841 1118 aa8.95□□□□□ -0.98
SMG1-215ENST00000568239 CEMIPQ8WUJ3 1361 aa8.95□□□□□ -0.98
SMG1-215ENST00000568239 COL18A1P39060 1754 aa8.95□□□□□ -0.98
SMG1-215ENST00000568239 CCDC30Q5VVM6 783 aa8.95□□□□□ -0.98
SMG1-215ENST00000568239 C1orf115Q9H7X2 142 aa8.95□□□□□ -0.98
SMG1-215ENST00000568239 WDR17Q8IZU2 1322 aa8.94□□□□□ -0.98
SMG1-215ENST00000568239 HDGFL1Q5TGJ6 251 aa8.94□□□□□ -0.98
SMG1-215ENST00000568239 G2E3Q7L622 706 aa8.94□□□□□ -0.98
SMG1-215ENST00000568239 IFNL2Q8IZJ0 200 aa8.94□□□□□ -0.98
SMG1-215ENST00000568239 ZBTB40Q9NUA8 1239 aa8.94□□□□□ -0.98
SMG1-215ENST00000568239 BABAM1Q9NWV8 329 aa8.94□□□□□ -0.98
SMG1-215ENST00000568239 MEGF6O75095 1541 aa8.94□□□□□ -0.98
SMG1-215ENST00000568239 CRYBG1Q9Y4K1 1723 aa8.94□□□□□ -0.98
SMG1-215ENST00000568239 NCAPD2Q15021 1401 aa8.94□□□□□ -0.98
SMG1-215ENST00000568239 FKBP5Q13451 457 aaPredicted RBP8.94□□□□□ -0.98
SMG1-215ENST00000568239 LARP1Q6PKG0 1096 aaKnown RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms