RNA–Protein interactions for RNA: ENST00000566600.1

NME3-209, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 913 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-209ENST00000566600 RGPD1P0DJD0 1748 aa35.14■■■■□ 3.22
NME3-209ENST00000566600 BCL9O00512 1426 aa35.12■■■■□ 3.21
NME3-209ENST00000566600 SF3B2Q13435 895 aaKnown RBP35.09■■■■□ 3.21
NME3-209ENST00000566600 SULT6B1Q6IMI4 303 aa35.09■■■■□ 3.21
NME3-209ENST00000566600 DDX54Q8TDD1 881 aaKnown RBP35.09■■■■□ 3.21
NME3-209ENST00000566600 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP35.09■■■■□ 3.21
NME3-209ENST00000566600 SPG7Q9UQ90 795 aa35.08■■■■□ 3.21
NME3-209ENST00000566600 NUDCQ9Y266 331 aa35.08■■■■□ 3.21
NME3-209ENST00000566600 KDRP35968 1356 aa35.08■■■■□ 3.21
NME3-209ENST00000566600 MYBBP1AQ9BQG0 1328 aaKnown RBP35.07■■■■□ 3.21
NME3-209ENST00000566600 PCDH11XQ9BZA7 1347 aa35.06■■■■□ 3.2
NME3-209ENST00000566600 PCDH11YQ9BZA8 1340 aa35.06■■■■□ 3.2
NME3-209ENST00000566600 PRKRIP1Q9H875 184 aaPredicted RBP35.06■■■■□ 3.2
NME3-209ENST00000566600 AEBP1Q8IUX7 1158 aa35.05■■■■□ 3.2
NME3-209ENST00000566600 PKD1L3Q7Z443 1732 aa35.05■■■■□ 3.2
NME3-209ENST00000566600 U2SURPO15042 1029 aaKnown RBP35.04■■■■□ 3.2
NME3-209ENST00000566600 SHANK3Q9BYB0 1731 aa35.03■■■■□ 3.2
NME3-209ENST00000566600 TRIM37O94972 964 aa35.03■■■■□ 3.2
NME3-209ENST00000566600 AMOTQ4VCS5 1084 aa35■■■■□ 3.19
NME3-209ENST00000566600 PLEKHO1Q53GL0 409 aaPredicted RBP35■■■■□ 3.19
NME3-209ENST00000566600 HMOX1P09601 288 aa34.99■■■■□ 3.19
NME3-209ENST00000566600 SBF2Q86WG5 1849 aa34.99■■■■□ 3.19
NME3-209ENST00000566600 BCL11BQ9C0K0 894 aaPredicted RBP34.96■■■■□ 3.19
NME3-209ENST00000566600 CYP27B1O15528 508 aa34.95■■■■□ 3.19
NME3-209ENST00000566600 BAG6P46379 1132 aa34.95■■■■□ 3.19
NME3-209ENST00000566600 TNS1Q9HBL0 1735 aaKnown RBP34.95■■■■□ 3.18
NME3-209ENST00000566600 IFNL2Q8IZJ0 200 aa34.94■■■■□ 3.18
NME3-209ENST00000566600 ANP32CO43423 234 aa34.92■■■■□ 3.18
NME3-209ENST00000566600 U2AF1L5P0DN76 240 aaPredicted RBP34.92■■■■□ 3.18
NME3-209ENST00000566600 U2AF1Q01081 240 aaKnown RBP eCLIP34.92■■■■□ 3.18
NME3-209ENST00000566600 APBA3O96018 575 aa34.91■■■■□ 3.18
NME3-209ENST00000566600 ACSBG1Q96GR2 724 aa34.91■■■■□ 3.18
NME3-209ENST00000566600 NHSQ6T4R5 1651 aa34.91■■■■□ 3.18
NME3-209ENST00000566600 PHKG2P15735 406 aa34.9■■■■□ 3.18
NME3-209ENST00000566600 NKX1-1Q15270 411 aaPredicted RBP34.9■■■■□ 3.18
NME3-209ENST00000566600 ZNF530Q6P9A1 599 aaPredicted RBP34.89■■■■□ 3.18
NME3-209ENST00000566600 FCHSD2O94868 740 aa34.87■■■■□ 3.17
NME3-209ENST00000566600 HSP90AB1P08238 724 aaKnown RBP34.87■■■■□ 3.17
NME3-209ENST00000566600 KCNQ2O43526 872 aa34.86■■■■□ 3.17
NME3-209ENST00000566600 C1orf141Q5JVX7 400 aa34.86■■■■□ 3.17
NME3-209ENST00000566600 DEFB132Q7Z7B7 95 aa34.86■■■■□ 3.17
NME3-209ENST00000566600 KAT6BQ8WYB5 2073 aa34.86■■■■□ 3.17
NME3-209ENST00000566600 DOT1LQ8TEK3 1739 aa34.85■■■■□ 3.17
NME3-209ENST00000566600 RSPH6AQ9H0K4 717 aa34.85■■■■□ 3.17
NME3-209ENST00000566600 PRIM1P49642 420 aaKnown RBP34.83■■■■□ 3.17
NME3-209ENST00000566600 SYTL4Q96C24 671 aaPredicted RBP34.83■■■■□ 3.17
NME3-209ENST00000566600 PRKAR2BP31323 418 aa34.82■■■■□ 3.16
NME3-209ENST00000566600 EN1Q05925 392 aaPredicted RBP34.82■■■■□ 3.16
NME3-209ENST00000566600 PTF1AQ7RTS3 328 aa34.82■■■■□ 3.16
NME3-209ENST00000566600 PLSCR1O15162 318 aa34.8■■■■□ 3.16
NME3-209ENST00000566600 DCAF5Q96JK2 942 aa34.8■■■■□ 3.16
NME3-209ENST00000566600 PNNQ9H307 717 aaKnown RBP34.8■■■■□ 3.16
NME3-209ENST00000566600 AKAP4Q5JQC9 854 aa34.79■■■■□ 3.16
NME3-209ENST00000566600 MTHFSDQ2M296 383 aaKnown RBP34.78■■■■□ 3.16
NME3-209ENST00000566600 GAS2L2Q8NHY3 880 aa34.78■■■■□ 3.16
NME3-209ENST00000566600 CAMKK2Q96RR4 588 aa34.78■■■■□ 3.16
NME3-209ENST00000566600 NEFMP07197 916 aa34.77■■■■□ 3.16
NME3-209ENST00000566600 RGPD3A6NKT7 1758 aaPredicted RBP34.77■■■■□ 3.16
NME3-209ENST00000566600 RGPD4Q7Z3J3 1758 aa34.77■■■■□ 3.16
NME3-209ENST00000566600 BTAF1O14981 1849 aa34.76■■■■□ 3.16
NME3-209ENST00000566600 TOGARAM1Q9Y4F4 1720 aa34.75■■■■□ 3.15
NME3-209ENST00000566600 ERVV-2B6SEH9 535 aa34.74■■■■□ 3.15
NME3-209ENST00000566600 WDR43Q15061 677 aaKnown RBP eCLIP34.74■■■■□ 3.15
NME3-209ENST00000566600 EZH2Q15910 746 aaKnown RBP34.74■■■■□ 3.15
NME3-209ENST00000566600 PHACTR3Q96KR7 559 aa34.73■■■■□ 3.15
NME3-209ENST00000566600 MPRIPQ6WCQ1 1025 aa34.72■■■■□ 3.15
NME3-209ENST00000566600 TMOD3Q9NYL9 352 aa34.71■■■■□ 3.15
NME3-209ENST00000566600 ITGB4P16144 1822 aa34.71■■■■□ 3.15
NME3-209ENST00000566600 KDM6AO15550 1401 aaPredicted RBP34.7■■■■□ 3.15
NME3-209ENST00000566600 MAP3K5Q99683 1374 aa34.67■■■■□ 3.14
NME3-209ENST00000566600 GNAT3A8MTJ3 354 aa34.67■■■■□ 3.14
NME3-209ENST00000566600 MAPK8IP3Q9UPT6 1336 aa34.66■■■■□ 3.14
NME3-209ENST00000566600 CABP4P57796 275 aa34.66■■■■□ 3.14
NME3-209ENST00000566600 PIGBQ92521 554 aa34.66■■■■□ 3.14
NME3-209ENST00000566600 PLEKHF1Q96S99 279 aa34.66■■■■□ 3.14
NME3-209ENST00000566600 RREB1Q92766 1687 aa34.66■■■■□ 3.14
NME3-209ENST00000566600 SCN11AQ9UI33 1791 aa34.65■■■■□ 3.14
NME3-209ENST00000566600 TXNRD1Q16881 649 aa34.64■■■■□ 3.14
NME3-209ENST00000566600 SMARCC1Q92922 1105 aaPredicted RBP34.64■■■■□ 3.14
NME3-209ENST00000566600 RNMTO43148 476 aaKnown RBP34.63■■■■□ 3.13
NME3-209ENST00000566600 LGR6Q9HBX8 967 aa34.61■■■■□ 3.13
NME3-209ENST00000566600 MRS2Q9HD23 443 aa34.61■■■■□ 3.13
NME3-209ENST00000566600 ADAMTS8Q9UP79 889 aa34.61■■■■□ 3.13
NME3-209ENST00000566600 ADAMTS7Q9UKP4 1686 aa34.6■■■■□ 3.13
NME3-209ENST00000566600 PROM2Q8N271 834 aa34.6■■■■□ 3.13
NME3-209ENST00000566600 SLC27A3Q5K4L6 730 aa34.59■■■■□ 3.13
NME3-209ENST00000566600 HTATSF1O43719 755 aaKnown RBP34.58■■■■□ 3.13
NME3-209ENST00000566600 CCDC184Q52MB2 194 aa34.58■■■■□ 3.13
NME3-209ENST00000566600 NFATC2IPQ8NCF5 419 aa34.57■■■■□ 3.12
NME3-209ENST00000566600 RTF1Q92541 710 aaKnown RBP34.57■■■■□ 3.12
NME3-209ENST00000566600 SLC52A2Q9HAB3 445 aa34.57■■■■□ 3.12
NME3-209ENST00000566600 NUP188Q5SRE5 1749 aa34.57■■■■□ 3.12
NME3-209ENST00000566600 PALLDQ8WX93 1383 aa34.57■■■■□ 3.12
NME3-209ENST00000566600 LY75O60449 1722 aa34.56■■■■□ 3.12
NME3-209ENST00000566600 VIRMAQ69YN4 1812 aaKnown RBP34.56■■■■□ 3.12
NME3-209ENST00000566600 NFE2L2Q16236 605 aa34.56■■■■□ 3.12
NME3-209ENST00000566600 NBPF14Q5TI25 921 aa34.56■■■■□ 3.12
NME3-209ENST00000566600 RUNDC1Q96C34 613 aa34.56■■■■□ 3.12
NME3-209ENST00000566600 MRC1P22897 1456 aa34.55■■■■□ 3.12
NME3-209ENST00000566600 HMGB2P26583 209 aaKnown RBP34.55■■■■□ 3.12
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms