RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 LARP1Q6PKG0 1096 aaKnown RBP39.91■■■■□ 3.98
CTCF-203ENST00000566078 RAPGEF4Q8WZA2 1011 aa39.91■■■■□ 3.98
CTCF-203ENST00000566078 CRB1P82279 1406 aa39.91■■■■□ 3.98
CTCF-203ENST00000566078 IL16Q14005 1332 aa39.91■■■■□ 3.98
CTCF-203ENST00000566078 THUMPD2Q9BTF0 503 aaKnown RBP39.91■■■■□ 3.98
CTCF-203ENST00000566078 PLEKHO1Q53GL0 409 aaPredicted RBP39.9■■■■□ 3.98
CTCF-203ENST00000566078 SPATA31A6Q5VVP1 1343 aa39.89■■■■□ 3.98
CTCF-203ENST00000566078 MAP3K5Q99683 1374 aa39.89■■■■□ 3.98
CTCF-203ENST00000566078 DCTN1Q14203 1278 aa39.88■■■■□ 3.97
CTCF-203ENST00000566078 AMOTQ4VCS5 1084 aa39.88■■■■□ 3.97
CTCF-203ENST00000566078 CARD10Q9BWT7 1032 aa39.88■■■■□ 3.97
CTCF-203ENST00000566078 TATP17735 454 aaPredicted RBP39.87■■■■□ 3.97
CTCF-203ENST00000566078 CALD1Q05682 793 aaKnown RBP39.87■■■■□ 3.97
CTCF-203ENST00000566078 LRP6O75581 1613 aa39.87■■■■□ 3.97
CTCF-203ENST00000566078 MYH16Q9H6N6 1097 aa39.87■■■■□ 3.97
CTCF-203ENST00000566078 PLEKHG2Q9H7P9 1386 aa39.86■■■■□ 3.97
CTCF-203ENST00000566078 RTF1Q92541 710 aaKnown RBP39.85■■■■□ 3.97
CTCF-203ENST00000566078 GNAT3A8MTJ3 354 aa39.84■■■■□ 3.97
CTCF-203ENST00000566078 MCM10Q7L590 875 aa39.84■■■■□ 3.97
CTCF-203ENST00000566078 SLIT2O94813 1529 aa39.84■■■■□ 3.97
CTCF-203ENST00000566078 ZNF530Q6P9A1 599 aaPredicted RBP39.83■■■■□ 3.97
CTCF-203ENST00000566078 HTATSF1O43719 755 aaKnown RBP39.82■■■■□ 3.96
CTCF-203ENST00000566078 SHANK3Q9BYB0 1731 aa39.81■■■■□ 3.96
CTCF-203ENST00000566078 OVOS2A0A0G2JMS6 1433 aa39.81■■■■□ 3.96
CTCF-203ENST00000566078 FANCIQ9NVI1 1328 aa39.8■■■■□ 3.96
CTCF-203ENST00000566078 TSR2Q969E8 191 aaKnown RBP39.78■■■■□ 3.96
CTCF-203ENST00000566078 LAS1LQ9Y4W2 734 aaKnown RBP39.78■■■■□ 3.96
CTCF-203ENST00000566078 SUPT16HQ9Y5B9 1047 aaKnown RBP39.78■■■■□ 3.96
CTCF-203ENST00000566078 SCN11AQ9UI33 1791 aa39.78■■■■□ 3.96
CTCF-203ENST00000566078 AKAP4Q5JQC9 854 aa39.77■■■■□ 3.96
CTCF-203ENST00000566078 IFT57Q9NWB7 429 aa39.77■■■■□ 3.96
CTCF-203ENST00000566078 ADAMTS7Q9UKP4 1686 aa39.76■■■■□ 3.96
CTCF-203ENST00000566078 GNAI1P63096 354 aa39.76■■■■□ 3.95
CTCF-203ENST00000566078 C1orf141Q5JVX7 400 aa39.76■■■■□ 3.95
CTCF-203ENST00000566078 SPG7Q9UQ90 795 aa39.76■■■■□ 3.95
CTCF-203ENST00000566078 TNKS1BP1Q9C0C2 1729 aaKnown RBP39.75■■■■□ 3.95
CTCF-203ENST00000566078 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP39.75■■■■□ 3.956e-7■■■■□ 22.8
CTCF-203ENST00000566078 USP35Q9P2H5 1018 aa39.75■■■■□ 3.95
CTCF-203ENST00000566078 C8orf37Q96NL8 207 aa39.74■■■■□ 3.95
CTCF-203ENST00000566078 RCAN3Q9UKA8 241 aa39.74■■■■□ 3.95
CTCF-203ENST00000566078 IL2RBP14784 551 aa39.73■■■■□ 3.95
CTCF-203ENST00000566078 ZNF853P0CG23 659 aa39.72■■■■□ 3.95
CTCF-203ENST00000566078 CFAP44Q96MT7 982 aa39.72■■■■□ 3.95
CTCF-203ENST00000566078 SIPA1L3O60292 1781 aaPredicted RBP39.71■■■■□ 3.95
CTCF-203ENST00000566078 IL17REQ8NFR9 667 aa39.69■■■■□ 3.94
CTCF-203ENST00000566078 NGLY1Q96IV0 654 aa39.69■■■■□ 3.94
CTCF-203ENST00000566078 CEMIPQ8WUJ3 1361 aa39.67■■■■□ 3.94
CTCF-203ENST00000566078 DISP2A7MBM2 1401 aa39.67■■■■□ 3.94
CTCF-203ENST00000566078 MBIPQ9NS73 344 aa39.67■■■■□ 3.94
CTCF-203ENST00000566078 MEX3CQ5U5Q3 659 aaKnown RBP39.65■■■■□ 3.94
CTCF-203ENST00000566078 MPRIPQ6WCQ1 1025 aa39.65■■■■□ 3.94
CTCF-203ENST00000566078 KDM3BQ7LBC6 1761 aa39.64■■■■□ 3.94
CTCF-203ENST00000566078 BCL9LQ86UU0 1499 aa39.64■■■■□ 3.94
CTCF-203ENST00000566078 PHKG2P15735 406 aa39.64■■■■□ 3.94
CTCF-203ENST00000566078 EXOSC9Q06265 439 aaKnown RBP39.64■■■■□ 3.94
CTCF-203ENST00000566078 UNC5CLQ8IV45 518 aa39.63■■■■□ 3.93
CTCF-203ENST00000566078 IFNL2Q8IZJ0 200 aa39.63■■■■□ 3.93
CTCF-203ENST00000566078 ZCRB1Q8TBF4 217 aaKnown RBP39.63■■■■□ 3.93
CTCF-203ENST00000566078 LGR6Q9HBX8 967 aa39.63■■■■□ 3.93
CTCF-203ENST00000566078 SPATA31A1Q5TZJ5 1347 aa39.63■■■■□ 3.93
CTCF-203ENST00000566078 PCDH11XQ9BZA7 1347 aa39.62■■■■□ 3.93
CTCF-203ENST00000566078 PCDH11YQ9BZA8 1340 aa39.62■■■■□ 3.93
CTCF-203ENST00000566078 CHL1O00533 1208 aa39.61■■■■□ 3.93
CTCF-203ENST00000566078 RNMTO43148 476 aaKnown RBP39.61■■■■□ 3.93
CTCF-203ENST00000566078 SPATA31A5Q5VU36 1347 aa39.6■■■■□ 3.93
CTCF-203ENST00000566078 SPATA31A7Q8IWB4 1347 aa39.6■■■■□ 3.93
CTCF-203ENST00000566078 CYP27B1O15528 508 aa39.6■■■■□ 3.93
CTCF-203ENST00000566078 FNBP4Q8N3X1 1017 aaPredicted RBP39.6■■■■□ 3.93
CTCF-203ENST00000566078 GTF3C3Q9Y5Q9 886 aa39.6■■■■□ 3.93
CTCF-203ENST00000566078 KDM6AO15550 1401 aaPredicted RBP39.59■■■■□ 3.93
CTCF-203ENST00000566078 CCDC9Q9Y3X0 531 aaKnown RBP39.58■■■■□ 3.93
CTCF-203ENST00000566078 RNF123Q5XPI4 1314 aa39.57■■■■□ 3.93
CTCF-203ENST00000566078 THRAP3Q9Y2W1 955 aaKnown RBP39.57■■■■□ 3.92
CTCF-203ENST00000566078 NEFLP07196 543 aa39.56■■■■□ 3.92
CTCF-203ENST00000566078 TSPYL4Q9UJ04 414 aa39.56■■■■□ 3.92
CTCF-203ENST00000566078 CT47B1P0C2W7 299 aaPredicted RBP39.54■■■■□ 3.92
CTCF-203ENST00000566078 TEFQ10587 303 aa39.54■■■■□ 3.92
CTCF-203ENST00000566078 MIS18AQ9NYP9 233 aa39.54■■■■□ 3.92
CTCF-203ENST00000566078 TAF7Q15545 349 aaPredicted RBP39.54■■■■□ 3.92
CTCF-203ENST00000566078 USP21Q9UK80 565 aa39.54■■■■□ 3.92
CTCF-203ENST00000566078 HSP90AB1P08238 724 aaKnown RBP39.53■■■■□ 3.92
CTCF-203ENST00000566078 VPS72Q15906 364 aa39.52■■■■□ 3.92
CTCF-203ENST00000566078 MRC1P22897 1456 aa39.52■■■■□ 3.92
CTCF-203ENST00000566078 RRP1P56182 461 aaKnown RBP39.51■■■■□ 3.92
CTCF-203ENST00000566078 TOGARAM1Q9Y4F4 1720 aa39.51■■■■□ 3.92
CTCF-203ENST00000566078 BABAM1Q9NWV8 329 aa39.51■■■■□ 3.91
CTCF-203ENST00000566078 TNS2Q63HR2 1409 aa39.5■■■■□ 3.91
CTCF-203ENST00000566078 DCAF5Q96JK2 942 aa39.5■■■■□ 3.91
CTCF-203ENST00000566078 CDCA7Q9BWT1 371 aaPredicted RBP39.5■■■■□ 3.91
CTCF-203ENST00000566078 DDX54Q8TDD1 881 aaKnown RBP39.48■■■■□ 3.91
CTCF-203ENST00000566078 AFF2P51816 1311 aa39.48■■■■□ 3.91
CTCF-203ENST00000566078 RARSP54136 660 aaKnown RBP39.47■■■■□ 3.91
CTCF-203ENST00000566078 BARGINQ6ZT62 677 aa39.45■■■■□ 3.91
CTCF-203ENST00000566078 C8orf58Q8NAV2 365 aa39.45■■■■□ 3.91
CTCF-203ENST00000566078 BCAR3O75815 825 aa39.44■■■■□ 3.9
CTCF-203ENST00000566078 IRX6P78412 446 aaPredicted RBP39.44■■■■□ 3.9
CTCF-203ENST00000566078 TSPYL6Q8N831 410 aa39.44■■■■□ 3.9
CTCF-203ENST00000566078 TWISTNBQ3B726 338 aaPredicted RBP39.43■■■■□ 3.9
CTCF-203ENST00000566078 ITGB4P16144 1822 aa39.43■■■■□ 3.9
CTCF-203ENST00000566078 FKBP8Q14318 412 aa39.43■■■■□ 3.9
Retrieved 100 of 20,778 RNA–protein pairs in 147.8 ms