RNA–Protein interactions for RNA: ENST00000565834.1

COMMD4-213, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-213ENST00000565834 TRMT2AQ8IZ69 625 aaKnown RBP24.47■■□□□ 1.51
COMMD4-213ENST00000565834 CARD10Q9BWT7 1032 aa24.47■■□□□ 1.51
COMMD4-213ENST00000565834 CRB1P82279 1406 aa24.47■■□□□ 1.51
COMMD4-213ENST00000565834 NRAPQ86VF7 1730 aa24.47■■□□□ 1.51
COMMD4-213ENST00000565834 TATP17735 454 aaPredicted RBP24.46■■□□□ 1.51
COMMD4-213ENST00000565834 PLEKHG2Q9H7P9 1386 aa24.46■■□□□ 1.51
COMMD4-213ENST00000565834 PARP4Q9UKK3 1724 aaKnown RBP24.46■■□□□ 1.51
COMMD4-213ENST00000565834 MEGF6O75095 1541 aa24.46■■□□□ 1.51
COMMD4-213ENST00000565834 MAP3K5Q99683 1374 aa24.45■■□□□ 1.5
COMMD4-213ENST00000565834 RTF1Q92541 710 aaKnown RBP24.44■■□□□ 1.5
COMMD4-213ENST00000565834 THUMPD2Q9BTF0 503 aaKnown RBP24.44■■□□□ 1.5
COMMD4-213ENST00000565834 MYH16Q9H6N6 1097 aa24.44■■□□□ 1.5
COMMD4-213ENST00000565834 GNAT3A8MTJ3 354 aa24.43■■□□□ 1.5
COMMD4-213ENST00000565834 HTATSF1O43719 755 aaKnown RBP24.43■■□□□ 1.5
COMMD4-213ENST00000565834 PKD1L3Q7Z443 1732 aa24.43■■□□□ 1.5
COMMD4-213ENST00000565834 DCTN1Q14203 1278 aa24.43■■□□□ 1.5
COMMD4-213ENST00000565834 ZNF530Q6P9A1 599 aaPredicted RBP24.43■■□□□ 1.5
COMMD4-213ENST00000565834 SLIT2O94813 1529 aa24.42■■□□□ 1.5
COMMD4-213ENST00000565834 LRP6O75581 1613 aa24.42■■□□□ 1.5
COMMD4-213ENST00000565834 MCM10Q7L590 875 aa24.41■■□□□ 1.5
COMMD4-213ENST00000565834 ILDR1Q86SU0 546 aaPredicted RBP24.4■■□□□ 1.5
COMMD4-213ENST00000565834 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.4■■□□□ 1.5
COMMD4-213ENST00000565834 LRRC37A3O60309 1634 aa24.4■■□□□ 1.5
COMMD4-213ENST00000565834 SPG7Q9UQ90 795 aa24.4■■□□□ 1.5
COMMD4-213ENST00000565834 OVOS2A0A0G2JMS6 1433 aa24.4■■□□□ 1.5
COMMD4-213ENST00000565834 VIRMAQ69YN4 1812 aaKnown RBP24.39■■□□□ 1.5
COMMD4-213ENST00000565834 AKAP4Q5JQC9 854 aa24.39■■□□□ 1.49
COMMD4-213ENST00000565834 C1orf141Q5JVX7 400 aa24.39■■□□□ 1.49
COMMD4-213ENST00000565834 IL2RBP14784 551 aa24.38■■□□□ 1.49
COMMD4-213ENST00000565834 GNAI1P63096 354 aa24.38■■□□□ 1.49
COMMD4-213ENST00000565834 C8orf37Q96NL8 207 aa24.38■■□□□ 1.49
COMMD4-213ENST00000565834 IFT57Q9NWB7 429 aa24.38■■□□□ 1.49
COMMD4-213ENST00000565834 FANCIQ9NVI1 1328 aa24.38■■□□□ 1.49
COMMD4-213ENST00000565834 USP35Q9P2H5 1018 aa24.37■■□□□ 1.49
COMMD4-213ENST00000565834 LAS1LQ9Y4W2 734 aaKnown RBP24.37■■□□□ 1.49
COMMD4-213ENST00000565834 TSR2Q969E8 191 aaKnown RBP24.37■■□□□ 1.49
COMMD4-213ENST00000565834 NGLY1Q96IV0 654 aa24.37■■□□□ 1.49
COMMD4-213ENST00000565834 WNK3Q9BYP7 1800 aa24.36■■□□□ 1.49
COMMD4-213ENST00000565834 CFAP44Q96MT7 982 aa24.36■■□□□ 1.49
COMMD4-213ENST00000565834 RCAN3Q9UKA8 241 aa24.35■■□□□ 1.49
COMMD4-213ENST00000565834 SUPT16HQ9Y5B9 1047 aaKnown RBP24.35■■□□□ 1.49
COMMD4-213ENST00000565834 ZNF853P0CG23 659 aa24.34■■□□□ 1.49
COMMD4-213ENST00000565834 MEX3CQ5U5Q3 659 aaKnown RBP24.34■■□□□ 1.49
COMMD4-213ENST00000565834 IL17REQ8NFR9 667 aa24.34■■□□□ 1.49
COMMD4-213ENST00000565834 UNC5CLQ8IV45 518 aa24.33■■□□□ 1.49
COMMD4-213ENST00000565834 CEMIPQ8WUJ3 1361 aa24.32■■□□□ 1.48
COMMD4-213ENST00000565834 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.32■■□□□ 1.48
COMMD4-213ENST00000565834 IFNL2Q8IZJ0 200 aa24.31■■□□□ 1.48
COMMD4-213ENST00000565834 FNBP4Q8N3X1 1017 aaPredicted RBP24.31■■□□□ 1.48
COMMD4-213ENST00000565834 ZCRB1Q8TBF4 217 aaKnown RBP24.31■■□□□ 1.48
COMMD4-213ENST00000565834 MBIPQ9NS73 344 aa24.31■■□□□ 1.48
COMMD4-213ENST00000565834 ADAMTS7Q9UKP4 1686 aa24.31■■□□□ 1.48
COMMD4-213ENST00000565834 SHANK3Q9BYB0 1731 aa24.31■■□□□ 1.48
COMMD4-213ENST00000565834 SPATA31A1Q5TZJ5 1347 aa24.31■■□□□ 1.48
COMMD4-213ENST00000565834 DISP2A7MBM2 1401 aa24.31■■□□□ 1.48
COMMD4-213ENST00000565834 BCL9LQ86UU0 1499 aa24.31■■□□□ 1.48
COMMD4-213ENST00000565834 PHKG2P15735 406 aa24.3■■□□□ 1.48
COMMD4-213ENST00000565834 MPRIPQ6WCQ1 1025 aa24.3■■□□□ 1.48
COMMD4-213ENST00000565834 SCN11AQ9UI33 1791 aa24.3■■□□□ 1.48
COMMD4-213ENST00000565834 PCDH11XQ9BZA7 1347 aa24.3■■□□□ 1.48
COMMD4-213ENST00000565834 PCDH11YQ9BZA8 1340 aa24.3■■□□□ 1.48
COMMD4-213ENST00000565834 CHL1O00533 1208 aa24.29■■□□□ 1.48
COMMD4-213ENST00000565834 EXOSC9Q06265 439 aaKnown RBP24.29■■□□□ 1.48
COMMD4-213ENST00000565834 LGR6Q9HBX8 967 aa24.29■■□□□ 1.48
COMMD4-213ENST00000565834 THRAP3Q9Y2W1 955 aaKnown RBP24.29■■□□□ 1.48
COMMD4-213ENST00000565834 SPATA31A5Q5VU36 1347 aa24.29■■□□□ 1.48
COMMD4-213ENST00000565834 SPATA31A7Q8IWB4 1347 aa24.29■■□□□ 1.48
COMMD4-213ENST00000565834 CYP27B1O15528 508 aa24.28■■□□□ 1.48
COMMD4-213ENST00000565834 RNMTO43148 476 aaKnown RBP24.28■■□□□ 1.48
COMMD4-213ENST00000565834 CCDC9Q9Y3X0 531 aaKnown RBP24.28■■□□□ 1.48
COMMD4-213ENST00000565834 HSP90AB1P08238 724 aaKnown RBP24.27■■□□□ 1.48
COMMD4-213ENST00000565834 CT47B1P0C2W7 299 aaPredicted RBP24.27■■□□□ 1.48
COMMD4-213ENST00000565834 CDCA7Q9BWT1 371 aaPredicted RBP24.26■■□□□ 1.47
COMMD4-213ENST00000565834 USP21Q9UK80 565 aa24.26■■□□□ 1.47
COMMD4-213ENST00000565834 KDM6AO15550 1401 aaPredicted RBP24.25■■□□□ 1.47
COMMD4-213ENST00000565834 TEFQ10587 303 aa24.25■■□□□ 1.47
COMMD4-213ENST00000565834 TAF7Q15545 349 aaPredicted RBP24.25■■□□□ 1.47
COMMD4-213ENST00000565834 VPS72Q15906 364 aa24.25■■□□□ 1.47
COMMD4-213ENST00000565834 TSPYL4Q9UJ04 414 aa24.25■■□□□ 1.47
COMMD4-213ENST00000565834 SIPA1L3O60292 1781 aaPredicted RBP24.25■■□□□ 1.47
COMMD4-213ENST00000565834 BABAM1Q9NWV8 329 aa24.24■■□□□ 1.47
COMMD4-213ENST00000565834 RNF123Q5XPI4 1314 aa24.24■■□□□ 1.47
COMMD4-213ENST00000565834 NEFLP07196 543 aa24.24■■□□□ 1.47
COMMD4-213ENST00000565834 DCAF5Q96JK2 942 aa24.24■■□□□ 1.47
COMMD4-213ENST00000565834 MIS18AQ9NYP9 233 aa24.23■■□□□ 1.47
COMMD4-213ENST00000565834 AFF2P51816 1311 aa24.22■■□□□ 1.47
COMMD4-213ENST00000565834 GTF3C3Q9Y5Q9 886 aa24.22■■□□□ 1.47
COMMD4-213ENST00000565834 KDM3BQ7LBC6 1761 aa24.22■■□□□ 1.47
COMMD4-213ENST00000565834 BARGINQ6ZT62 677 aa24.21■■□□□ 1.47
COMMD4-213ENST00000565834 DDX54Q8TDD1 881 aaKnown RBP24.21■■□□□ 1.47
COMMD4-213ENST00000565834 TNS2Q63HR2 1409 aa24.21■■□□□ 1.47
COMMD4-213ENST00000565834 MRC1P22897 1456 aa24.19■■□□□ 1.46
COMMD4-213ENST00000565834 EXOC5O00471 708 aa24.19■■□□□ 1.46
COMMD4-213ENST00000565834 RRP1P56182 461 aaKnown RBP24.19■■□□□ 1.46
COMMD4-213ENST00000565834 RARSP54136 660 aaKnown RBP24.18■■□□□ 1.46
COMMD4-213ENST00000565834 NKX1-1Q15270 411 aaPredicted RBP24.18■■□□□ 1.46
COMMD4-213ENST00000565834 C8orf58Q8NAV2 365 aa24.18■■□□□ 1.46
COMMD4-213ENST00000565834 SLC52A2Q9HAB3 445 aa24.18■■□□□ 1.46
COMMD4-213ENST00000565834 BTBD11A6QL63 1104 aa24.17■■□□□ 1.46
COMMD4-213ENST00000565834 TWISTNBQ3B726 338 aaPredicted RBP24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms