RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 MYOM1P52179 1685 aa23.57■■□□□ 1.36
CLN3-211ENST00000564091 HSP90AB2PQ58FF8 381 aa23.56■■□□□ 1.36
CLN3-211ENST00000564091 RTL1A6NKG5 1358 aa23.55■■□□□ 1.36
CLN3-211ENST00000564091 TFCP2L1Q9NZI6 479 aa23.55■■□□□ 1.36
CLN3-211ENST00000564091 NSD2O96028 1365 aa23.54■■□□□ 1.36
CLN3-211ENST00000564091 RAPGEF4Q8WZA2 1011 aa23.54■■□□□ 1.36
CLN3-211ENST00000564091 PAPPAQ13219 1627 aa23.54■■□□□ 1.36
CLN3-211ENST00000564091 PNPLA7Q6ZV29 1317 aa23.54■■□□□ 1.36
CLN3-211ENST00000564091 CDCA8Q53HL2 280 aa23.53■■□□□ 1.36
CLN3-211ENST00000564091 CARD14Q9BXL6 1004 aa23.53■■□□□ 1.36
CLN3-211ENST00000564091 BTAF1O14981 1849 aa23.52■■□□□ 1.36
CLN3-211ENST00000564091 SLC16A10Q8TF71 515 aa23.51■■□□□ 1.35
CLN3-211ENST00000564091 CCNL1Q9UK58 526 aaPredicted RBP23.51■■□□□ 1.35
CLN3-211ENST00000564091 TATP17735 454 aaPredicted RBP23.5■■□□□ 1.35
CLN3-211ENST00000564091 KLHL34Q8N239 644 aa23.5■■□□□ 1.35
CLN3-211ENST00000564091 CGNL1Q0VF96 1302 aa23.5■■□□□ 1.35
CLN3-211ENST00000564091 SMG6Q86US8 1419 aaKnown RBP23.5■■□□□ 1.35
CLN3-211ENST00000564091 INSRP06213 1382 aa23.49■■□□□ 1.35
CLN3-211ENST00000564091 POLD1P28340 1107 aa23.48■■□□□ 1.35
CLN3-211ENST00000564091 KAT6BQ8WYB5 2073 aa23.48■■□□□ 1.35
CLN3-211ENST00000564091 FAM208AQ9UK61 1670 aaKnown RBP23.48■■□□□ 1.35
CLN3-211ENST00000564091 EMILIN1Q9Y6C2 1016 aa23.47■■□□□ 1.35
CLN3-211ENST00000564091 FLT4P35916 1363 aa23.47■■□□□ 1.35
CLN3-211ENST00000564091 ZNF784Q8NCA9 323 aaPredicted RBP23.46■■□□□ 1.35
CLN3-211ENST00000564091 MAP3K5Q99683 1374 aa23.46■■□□□ 1.35
CLN3-211ENST00000564091 GOLGB1Q14789 3259 aaKnown RBP23.45■■□□□ 1.34
CLN3-211ENST00000564091 NSD3Q9BZ95 1437 aa23.44■■□□□ 1.34
CLN3-211ENST00000564091 PPM1GO15355 546 aaPredicted RBP23.44■■□□□ 1.34
CLN3-211ENST00000564091 MSH5O43196 834 aa23.44■■□□□ 1.34
CLN3-211ENST00000564091 GPR162Q16538 588 aa23.44■■□□□ 1.34
CLN3-211ENST00000564091 PCDH11XQ9BZA7 1347 aa23.43■■□□□ 1.34
CLN3-211ENST00000564091 PCDH11YQ9BZA8 1340 aa23.43■■□□□ 1.34
CLN3-211ENST00000564091 CYP27B1O15528 508 aa23.43■■□□□ 1.34
CLN3-211ENST00000564091 MPRIPQ6WCQ1 1025 aa23.43■■□□□ 1.34
CLN3-211ENST00000564091 COL23A1Q86Y22 540 aaPredicted RBP23.43■■□□□ 1.34
CLN3-211ENST00000564091 KIF24Q5T7B8 1368 aa23.42■■□□□ 1.34
CLN3-211ENST00000564091 PELP1Q8IZL8 1130 aaKnown RBP23.4■■□□□ 1.34
CLN3-211ENST00000564091 NLGN2Q8NFZ4 835 aa23.4■■□□□ 1.34
CLN3-211ENST00000564091 POLR3GLQ9BT43 218 aa23.39■■□□□ 1.33
CLN3-211ENST00000564091 TIMELESSQ9UNS1 1208 aa23.39■■□□□ 1.33
CLN3-211ENST00000564091 RGPD2P0DJD1 1756 aa23.39■■□□□ 1.33
CLN3-211ENST00000564091 MSL1Q68DK7 614 aa23.38■■□□□ 1.33
CLN3-211ENST00000564091 PCGF6Q9BYE7 350 aa23.38■■□□□ 1.33
CLN3-211ENST00000564091 DOT1LQ8TEK3 1739 aa23.38■■□□□ 1.33
CLN3-211ENST00000564091 PALLDQ8WX93 1383 aa23.37■■□□□ 1.33
CLN3-211ENST00000564091 SHANK3Q9BYB0 1731 aa23.36■■□□□ 1.33
CLN3-211ENST00000564091 WASHC2AQ641Q2 1341 aa23.35■■□□□ 1.33
CLN3-211ENST00000564091 EYA1Q99502 592 aa23.35■■□□□ 1.33
CLN3-211ENST00000564091 PIGBQ92521 554 aa23.34■■□□□ 1.33
CLN3-211ENST00000564091 POLKQ9UBT6 870 aa23.34■■□□□ 1.33
CLN3-211ENST00000564091 SPG7Q9UQ90 795 aa23.33■■□□□ 1.33
CLN3-211ENST00000564091 TNNT2P45379 298 aaPredicted RBP23.32■■□□□ 1.32
CLN3-211ENST00000564091 NKX1-1Q15270 411 aaPredicted RBP23.32■■□□□ 1.32
CLN3-211ENST00000564091 SMARCC1Q92922 1105 aaPredicted RBP23.32■■□□□ 1.32
CLN3-211ENST00000564091 SMIM5Q71RC9 77 aa23.31■■□□□ 1.32
CLN3-211ENST00000564091 AMIGO3Q86WK7 504 aa23.31■■□□□ 1.32
CLN3-211ENST00000564091 LY75O60449 1722 aa23.3■■□□□ 1.32
CLN3-211ENST00000564091 FLAD1Q8NFF5 587 aa23.3■■□□□ 1.32
CLN3-211ENST00000564091 YBX3P16989 372 aaKnown RBP eCLIP23.29■■□□□ 1.32
CLN3-211ENST00000564091 NCAPD2Q15021 1401 aa23.29■■□□□ 1.32
CLN3-211ENST00000564091 AK7Q96M32 723 aa23.29■■□□□ 1.32
CLN3-211ENST00000564091 PHF14O94880 888 aa23.27■■□□□ 1.32
CLN3-211ENST00000564091 HMGB2P26583 209 aaKnown RBP23.27■■□□□ 1.32
CLN3-211ENST00000564091 EIF4A2Q14240 407 aaKnown RBP23.27■■□□□ 1.32
CLN3-211ENST00000564091 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.27■■□□□ 1.32
CLN3-211ENST00000564091 CLSPNQ9HAW4 1339 aa23.27■■□□□ 1.32
CLN3-211ENST00000564091 QSER1Q2KHR3 1735 aa23.26■■□□□ 1.31
CLN3-211ENST00000564091 LOC102724428A0A0B4J2F2 783 aa23.26■■□□□ 1.31
CLN3-211ENST00000564091 PHKG2P15735 406 aa23.26■■□□□ 1.31
CLN3-211ENST00000564091 SIK1P57059 783 aa23.26■■□□□ 1.31
CLN3-211ENST00000564091 TMOD3Q9NYL9 352 aa23.26■■□□□ 1.31
CLN3-211ENST00000564091 KIF20BQ96Q89 1820 aa23.26■■□□□ 1.31
CLN3-211ENST00000564091 IFNL2Q8IZJ0 200 aa23.25■■□□□ 1.31
CLN3-211ENST00000564091 ASAP1Q9ULH1 1129 aa23.25■■□□□ 1.31
CLN3-211ENST00000564091 TUBGCP6Q96RT7 1819 aa23.24■■□□□ 1.31
CLN3-211ENST00000564091 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.24■■□□□ 1.31
CLN3-211ENST00000564091 GRIN3BO60391 1043 aa23.24■■□□□ 1.31
CLN3-211ENST00000564091 LINC00116Q8NCU8 138 aa23.24■■□□□ 1.31
CLN3-211ENST00000564091 PANK3Q9H999 370 aa23.24■■□□□ 1.31
CLN3-211ENST00000564091 HSPA5P11021 654 aaKnown RBP23.23■■□□□ 1.31
CLN3-211ENST00000564091 CD2APQ9Y5K6 639 aa23.23■■□□□ 1.31
CLN3-211ENST00000564091 C1QTNF8P60827 252 aa23.22■■□□□ 1.31
CLN3-211ENST00000564091 EIF4G2P78344 907 aaKnown RBP eCLIP23.22■■□□□ 1.311e-9■■■■□ 22.4
CLN3-211ENST00000564091 ITPK1Q13572 414 aa23.22■■□□□ 1.31
CLN3-211ENST00000564091 COL24A1Q17RW2 1714 aa23.22■■□□□ 1.31
CLN3-211ENST00000564091 ATG3Q9NT62 314 aa23.21■■□□□ 1.31
CLN3-211ENST00000564091 ATP6V1AP38606 617 aa23.2■■□□□ 1.3
CLN3-211ENST00000564091 TOGARAM1Q9Y4F4 1720 aa23.19■■□□□ 1.3
CLN3-211ENST00000564091 SENP3-EIF4A1A0A087X0R7 540 aa23.18■■□□□ 1.3
CLN3-211ENST00000564091 GNPATO15228 680 aa23.18■■□□□ 1.3
CLN3-211ENST00000564091 SSFA2P28290 1259 aa23.18■■□□□ 1.3
CLN3-211ENST00000564091 IGSF1Q8N6C5 1336 aa23.17■■□□□ 1.3
CLN3-211ENST00000564091 C5P01031 1676 aa23.16■■□□□ 1.3
CLN3-211ENST00000564091 GIGYF1O75420 1035 aaPredicted RBP23.16■■□□□ 1.3
CLN3-211ENST00000564091 WWC3Q9ULE0 1092 aa23.16■■□□□ 1.3
CLN3-211ENST00000564091 PKD1L3Q7Z443 1732 aa23.16■■□□□ 1.3
CLN3-211ENST00000564091 C4BP0C0L5 1744 aa23.14■■□□□ 1.3
CLN3-211ENST00000564091 PLEKHO1Q53GL0 409 aaPredicted RBP23.13■■□□□ 1.29
CLN3-211ENST00000564091 MORC1Q86VD1 984 aa23.13■■□□□ 1.29
CLN3-211ENST00000564091 SLC4A9Q96Q91 983 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms