RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 NHSQ6T4R5 1651 aa18.21■□□□□ 0.51
CLK3-213ENST00000563842 MEGF6O75095 1541 aa18.2■□□□□ 0.5
CLK3-213ENST00000563842 PLSCR1O15162 318 aa18.2■□□□□ 0.5
CLK3-213ENST00000563842 SHANK3Q9BYB0 1731 aa18.2■□□□□ 0.5
CLK3-213ENST00000563842 RREB1Q92766 1687 aa18.19■□□□□ 0.5
CLK3-213ENST00000563842 NCAPD2Q15021 1401 aa18.18■□□□□ 0.5
CLK3-213ENST00000563842 EIF4A2Q14240 407 aaKnown RBP18.18■□□□□ 0.5
CLK3-213ENST00000563842 CC2D1BQ5T0F9 858 aaKnown RBP18.18■□□□□ 0.5
CLK3-213ENST00000563842 EYA1Q99502 592 aa18.18■□□□□ 0.5
CLK3-213ENST00000563842 BTAF1O14981 1849 aa18.16■□□□□ 0.5
CLK3-213ENST00000563842 PKD1L3Q7Z443 1732 aa18.16■□□□□ 0.5
CLK3-213ENST00000563842 ZEB1P37275 1124 aaPredicted RBP18.16■□□□□ 0.5
CLK3-213ENST00000563842 ACSBG1Q96GR2 724 aa18.16■□□□□ 0.5
CLK3-213ENST00000563842 PCDH11XQ9BZA7 1347 aa18.16■□□□□ 0.5
CLK3-213ENST00000563842 PCDH11YQ9BZA8 1340 aa18.16■□□□□ 0.5
CLK3-213ENST00000563842 NUP188Q5SRE5 1749 aa18.15■□□□□ 0.5
CLK3-213ENST00000563842 NBPF14Q5TI25 921 aa18.15■□□□□ 0.5
CLK3-213ENST00000563842 SPG7Q9UQ90 795 aa18.15■□□□□ 0.5
CLK3-213ENST00000563842 PLEKHG2Q9H7P9 1386 aa18.15■□□□□ 0.5
CLK3-213ENST00000563842 DOT1LQ8TEK3 1739 aa18.15■□□□□ 0.5
CLK3-213ENST00000563842 KCNQ2O43526 872 aa18.14■□□□□ 0.49
CLK3-213ENST00000563842 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.14■□□□□ 0.49
CLK3-213ENST00000563842 IGSF1Q8N6C5 1336 aa18.14■□□□□ 0.49
CLK3-213ENST00000563842 MTHFSP49914 203 aa18.13■□□□□ 0.49
CLK3-213ENST00000563842 PTF1AQ7RTS3 328 aa18.13■□□□□ 0.49
CLK3-213ENST00000563842 CNGB1Q14028 1251 aaPredicted RBP18.1■□□□□ 0.49
CLK3-213ENST00000563842 SYTL4Q96C24 671 aaPredicted RBP18.1■□□□□ 0.49
CLK3-213ENST00000563842 PRIM1P49642 420 aaKnown RBP18.09■□□□□ 0.49
CLK3-213ENST00000563842 ITGB4P16144 1822 aa18.09■□□□□ 0.49
CLK3-213ENST00000563842 CYP27B1O15528 508 aa18.08■□□□□ 0.48
CLK3-213ENST00000563842 IL13P35225 146 aa18.08■□□□□ 0.48
CLK3-213ENST00000563842 TXNRD1Q16881 649 aa18.08■□□□□ 0.48
CLK3-213ENST00000563842 PSDA5PKW4 1024 aaPredicted RBP18.07■□□□□ 0.48
CLK3-213ENST00000563842 DIAPH1O60610 1272 aaKnown RBP18.07■□□□□ 0.48
CLK3-213ENST00000563842 R3HDM1Q15032 1099 aaKnown RBP18.07■□□□□ 0.48
CLK3-213ENST00000563842 AMOTQ4VCS5 1084 aa18.07■□□□□ 0.48
CLK3-213ENST00000563842 PLEKHO1Q53GL0 409 aaPredicted RBP18.07■□□□□ 0.48
CLK3-213ENST00000563842 IFFO2Q5TF58 517 aa18.07■□□□□ 0.48
CLK3-213ENST00000563842 IFNL2Q8IZJ0 200 aa18.07■□□□□ 0.48
CLK3-213ENST00000563842 NKX1-1Q15270 411 aaPredicted RBP18.06■□□□□ 0.48
CLK3-213ENST00000563842 PROM2Q8N271 834 aa18.06■□□□□ 0.48
CLK3-213ENST00000563842 HMGB2P26583 209 aaKnown RBP18.05■□□□□ 0.48
CLK3-213ENST00000563842 SULT6B1Q6IMI4 303 aa18.05■□□□□ 0.48
CLK3-213ENST00000563842 CFAP53Q96M91 514 aa18.05■□□□□ 0.48
CLK3-213ENST00000563842 LRP5O75197 1615 aa18.05■□□□□ 0.48
CLK3-213ENST00000563842 KDRP35968 1356 aa18.04■□□□□ 0.48
CLK3-213ENST00000563842 LY75O60449 1722 aa18.04■□□□□ 0.48
CLK3-213ENST00000563842 HSP90AB1P08238 724 aaKnown RBP18.04■□□□□ 0.48
CLK3-213ENST00000563842 SLC27A3Q5K4L6 730 aa18.04■□□□□ 0.48
CLK3-213ENST00000563842 PHKG2P15735 406 aa18.03■□□□□ 0.48
CLK3-213ENST00000563842 STK32BQ9NY57 414 aa18.02■□□□□ 0.48
CLK3-213ENST00000563842 TOGARAM1Q9Y4F4 1720 aa18.02■□□□□ 0.48
CLK3-213ENST00000563842 C1orf141Q5JVX7 400 aa18.01■□□□□ 0.47
CLK3-213ENST00000563842 MPRIPQ6WCQ1 1025 aa18.01■□□□□ 0.47
CLK3-213ENST00000563842 AEBP1Q8IUX7 1158 aa18.01■□□□□ 0.47
CLK3-213ENST00000563842 ZNF530Q6P9A1 599 aaPredicted RBP18■□□□□ 0.47
CLK3-213ENST00000563842 SMARCC1Q92922 1105 aaPredicted RBP18■□□□□ 0.47
CLK3-213ENST00000563842 PPP2R1AP30153 589 aa17.99■□□□□ 0.47
CLK3-213ENST00000563842 DCAF5Q96JK2 942 aa17.99■□□□□ 0.47
CLK3-213ENST00000563842 NUDCQ9Y266 331 aa17.99■□□□□ 0.47
CLK3-213ENST00000563842 COL3A1P02461 1466 aaPredicted RBP17.99■□□□□ 0.47
CLK3-213ENST00000563842 VIRMAQ69YN4 1812 aaKnown RBP17.98■□□□□ 0.47
CLK3-213ENST00000563842 HMOX1P09601 288 aa17.98■□□□□ 0.47
CLK3-213ENST00000563842 SLC15A2Q16348 729 aa17.98■□□□□ 0.47
CLK3-213ENST00000563842 ANO8Q9HCE9 1232 aaPredicted RBP17.98■□□□□ 0.47
CLK3-213ENST00000563842 TMOD3Q9NYL9 352 aa17.98■□□□□ 0.47
CLK3-213ENST00000563842 ERVV-2B6SEH9 535 aa17.97■□□□□ 0.47
CLK3-213ENST00000563842 U2SURPO15042 1029 aaKnown RBP17.97■□□□□ 0.47
CLK3-213ENST00000563842 DDX10Q13206 875 aaKnown RBP17.97■□□□□ 0.47
CLK3-213ENST00000563842 PAPPAQ13219 1627 aa17.97■□□□□ 0.47
CLK3-213ENST00000563842 PIGBQ92521 554 aa17.96■□□□□ 0.47
CLK3-213ENST00000563842 LRRC4BQ9NT99 713 aa17.96■□□□□ 0.47
CLK3-213ENST00000563842 CCNL1Q9UK58 526 aaPredicted RBP17.96■□□□□ 0.47
CLK3-213ENST00000563842 SCN11AQ9UI33 1791 aa17.96■□□□□ 0.47
CLK3-213ENST00000563842 QSER1Q2KHR3 1735 aa17.95■□□□□ 0.46
CLK3-213ENST00000563842 YY1P25490 414 aa17.95■□□□□ 0.46
CLK3-213ENST00000563842 AKAP4Q5JQC9 854 aa17.95■□□□□ 0.46
CLK3-213ENST00000563842 TAF1LQ8IZX4 1826 aa17.95■□□□□ 0.46
CLK3-213ENST00000563842 PALLDQ8WX93 1383 aa17.94■□□□□ 0.46
CLK3-213ENST00000563842 RALBP1Q15311 655 aa17.94■□□□□ 0.46
CLK3-213ENST00000563842 CASZ1Q86V15 1759 aa17.94■□□□□ 0.46
CLK3-213ENST00000563842 C5P01031 1676 aa17.93■□□□□ 0.46
CLK3-213ENST00000563842 CABP4P57796 275 aa17.92■□□□□ 0.46
CLK3-213ENST00000563842 SPON1Q9HCB6 807 aa17.92■□□□□ 0.46
CLK3-213ENST00000563842 KDM6AO15550 1401 aaPredicted RBP17.9■□□□□ 0.46
CLK3-213ENST00000563842 GAS2L2Q8NHY3 880 aa17.9■□□□□ 0.46
CLK3-213ENST00000563842 AKT1S1Q96B36 256 aa17.9■□□□□ 0.46
CLK3-213ENST00000563842 TUBGCP6Q96RT7 1819 aa17.89■□□□□ 0.45
CLK3-213ENST00000563842 U2AF1L5P0DN76 240 aaPredicted RBP17.89■□□□□ 0.45
CLK3-213ENST00000563842 U2AF1Q01081 240 aaKnown RBP eCLIP17.89■□□□□ 0.45
CLK3-213ENST00000563842 MTHFSDQ2M296 383 aaKnown RBP17.89■□□□□ 0.45
CLK3-213ENST00000563842 TFCP2L1Q9NZI6 479 aa17.89■□□□□ 0.45
CLK3-213ENST00000563842 LOC102724428A0A0B4J2F2 783 aa17.88■□□□□ 0.45
CLK3-213ENST00000563842 FCHSD2O94868 740 aa17.88■□□□□ 0.45
CLK3-213ENST00000563842 KCNQ4P56696 695 aa17.88■□□□□ 0.45
CLK3-213ENST00000563842 SIK1P57059 783 aa17.88■□□□□ 0.45
CLK3-213ENST00000563842 ZNF827Q17R98 1081 aa17.88■□□□□ 0.45
CLK3-213ENST00000563842 ATG3Q9NT62 314 aa17.88■□□□□ 0.45
CLK3-213ENST00000563842 ASAP1Q9ULH1 1129 aa17.88■□□□□ 0.45
CLK3-213ENST00000563842 ZNF831Q5JPB2 1677 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 169.9 ms