RNA–Protein interactions for RNA: ENST00000563759.1

LINC01960-201, Transcript of long intergenic non-protein coding RNA 1960, humanhuman

BASIC

Gene LINC01960, Length 1,884 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01960-201ENST00000563759 TSR2Q969E8 191 aaKnown RBP28.53■■■□□ 2.16
LINC01960-201ENST00000563759 STRN4Q9NRL3 753 aa28.53■■■□□ 2.16
LINC01960-201ENST00000563759 PLEKHO1Q53GL0 409 aaPredicted RBP28.53■■■□□ 2.16
LINC01960-201ENST00000563759 LAS1LQ9Y4W2 734 aaKnown RBP28.53■■■□□ 2.16
LINC01960-201ENST00000563759 GNAT3A8MTJ3 354 aa28.52■■■□□ 2.16
LINC01960-201ENST00000563759 EVA1CP58658 441 aa28.52■■■□□ 2.16
LINC01960-201ENST00000563759 AMOTQ4VCS5 1084 aa28.52■■■□□ 2.16
LINC01960-201ENST00000563759 PKD1L3Q7Z443 1732 aa28.51■■■□□ 2.16
LINC01960-201ENST00000563759 BTG4Q9NY30 223 aa28.51■■■□□ 2.15
LINC01960-201ENST00000563759 MEGF6O75095 1541 aa28.51■■■□□ 2.15
LINC01960-201ENST00000563759 JCADQ9P266 1359 aa28.51■■■□□ 2.15
LINC01960-201ENST00000563759 IFT57Q9NWB7 429 aa28.51■■■□□ 2.15
LINC01960-201ENST00000563759 GNAI1P63096 354 aa28.5■■■□□ 2.15
LINC01960-201ENST00000563759 NUTM2BA6NNL0 878 aaPredicted RBP28.49■■■□□ 2.15
LINC01960-201ENST00000563759 NUTM2EB1AL46 878 aaPredicted RBP28.49■■■□□ 2.15
LINC01960-201ENST00000563759 HTATSF1O43719 755 aaKnown RBP28.49■■■□□ 2.15
LINC01960-201ENST00000563759 ADAMTS2O95450 1211 aa28.49■■■□□ 2.15
LINC01960-201ENST00000563759 TATP17735 454 aaPredicted RBP28.49■■■□□ 2.15
LINC01960-201ENST00000563759 NUTM2AQ8IVF1 878 aaPredicted RBP28.49■■■□□ 2.15
LINC01960-201ENST00000563759 ZNF530Q6P9A1 599 aaPredicted RBP28.49■■■□□ 2.15
LINC01960-201ENST00000563759 PLEKHG2Q9H7P9 1386 aa28.48■■■□□ 2.15
LINC01960-201ENST00000563759 FKBP8Q14318 412 aa28.47■■■□□ 2.15
LINC01960-201ENST00000563759 CRB1P82279 1406 aa28.47■■■□□ 2.15
LINC01960-201ENST00000563759 NRAPQ86VF7 1730 aa28.47■■■□□ 2.15
LINC01960-201ENST00000563759 NWD2Q9ULI1 1742 aa28.47■■■□□ 2.15
LINC01960-201ENST00000563759 LARP1Q6PKG0 1096 aaKnown RBP28.46■■■□□ 2.15
LINC01960-201ENST00000563759 CFAP44Q96MT7 982 aa28.46■■■□□ 2.15
LINC01960-201ENST00000563759 RNF123Q5XPI4 1314 aa28.46■■■□□ 2.15
LINC01960-201ENST00000563759 C1orf141Q5JVX7 400 aa28.45■■■□□ 2.15
LINC01960-201ENST00000563759 CARD10Q9BWT7 1032 aa28.45■■■□□ 2.15
LINC01960-201ENST00000563759 ZNF853P0CG23 659 aa28.44■■■□□ 2.14
LINC01960-201ENST00000563759 AKAP4Q5JQC9 854 aa28.44■■■□□ 2.14
LINC01960-201ENST00000563759 RRP1P56182 461 aaKnown RBP28.43■■■□□ 2.14
LINC01960-201ENST00000563759 IRX6P78412 446 aaPredicted RBP28.43■■■□□ 2.14
LINC01960-201ENST00000563759 MBIPQ9NS73 344 aa28.43■■■□□ 2.14
LINC01960-201ENST00000563759 EXOSC9Q06265 439 aaKnown RBP28.42■■■□□ 2.14
LINC01960-201ENST00000563759 OVOS2A0A0G2JMS6 1433 aa28.42■■■□□ 2.14
LINC01960-201ENST00000563759 SPG7Q9UQ90 795 aa28.42■■■□□ 2.14
LINC01960-201ENST00000563759 WNK3Q9BYP7 1800 aa28.41■■■□□ 2.14
LINC01960-201ENST00000563759 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.4■■■□□ 2.14
LINC01960-201ENST00000563759 SCN11AQ9UI33 1791 aa28.4■■■□□ 2.14
LINC01960-201ENST00000563759 CT47B1P0C2W7 299 aaPredicted RBP28.39■■■□□ 2.14
LINC01960-201ENST00000563759 IL17REQ8NFR9 667 aa28.38■■■□□ 2.13
LINC01960-201ENST00000563759 USP35Q9P2H5 1018 aa28.38■■■□□ 2.13
LINC01960-201ENST00000563759 ADAMTS7Q9UKP4 1686 aa28.38■■■□□ 2.13
LINC01960-201ENST00000563759 HSPA1LP34931 641 aa28.38■■■□□ 2.13
LINC01960-201ENST00000563759 CEMIPQ8WUJ3 1361 aa28.37■■■□□ 2.13
LINC01960-201ENST00000563759 SHANK3Q9BYB0 1731 aa28.37■■■□□ 2.13
LINC01960-201ENST00000563759 SPATA31A6Q5VVP1 1343 aa28.37■■■□□ 2.13
LINC01960-201ENST00000563759 IL2RBP14784 551 aa28.36■■■□□ 2.13
LINC01960-201ENST00000563759 CHL1O00533 1208 aa28.36■■■□□ 2.13
LINC01960-201ENST00000563759 SIPA1L3O60292 1781 aaPredicted RBP28.35■■■□□ 2.13
LINC01960-201ENST00000563759 MPRIPQ6WCQ1 1025 aa28.35■■■□□ 2.13
LINC01960-201ENST00000563759 TSPYL4Q9UJ04 414 aa28.34■■■□□ 2.13
LINC01960-201ENST00000563759 SLIT2O94813 1529 aa28.34■■■□□ 2.13
LINC01960-201ENST00000563759 KDM3BQ7LBC6 1761 aa28.33■■■□□ 2.13
LINC01960-201ENST00000563759 RARSP54136 660 aaKnown RBP28.33■■■□□ 2.13
LINC01960-201ENST00000563759 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.33■■■□□ 2.13
LINC01960-201ENST00000563759 BCAR3O75815 825 aa28.32■■■□□ 2.12
LINC01960-201ENST00000563759 IFNL2Q8IZJ0 200 aa28.32■■■□□ 2.12
LINC01960-201ENST00000563759 LGR6Q9HBX8 967 aa28.32■■■□□ 2.12
LINC01960-201ENST00000563759 LRP6O75581 1613 aa28.32■■■□□ 2.12
LINC01960-201ENST00000563759 PHKG2P15735 406 aa28.32■■■□□ 2.12
LINC01960-201ENST00000563759 TEFQ10587 303 aa28.32■■■□□ 2.12
LINC01960-201ENST00000563759 PLIN1O60240 522 aa28.31■■■□□ 2.12
LINC01960-201ENST00000563759 MIS18AQ9NYP9 233 aa28.31■■■□□ 2.12
LINC01960-201ENST00000563759 PCDH11XQ9BZA7 1347 aa28.31■■■□□ 2.12
LINC01960-201ENST00000563759 PCDH11YQ9BZA8 1340 aa28.31■■■□□ 2.12
LINC01960-201ENST00000563759 RNMTO43148 476 aaKnown RBP28.3■■■□□ 2.12
LINC01960-201ENST00000563759 TAF7Q15545 349 aaPredicted RBP28.3■■■□□ 2.12
LINC01960-201ENST00000563759 C8orf37Q96NL8 207 aa28.3■■■□□ 2.12
LINC01960-201ENST00000563759 ZCRB1Q8TBF4 217 aaKnown RBP28.29■■■□□ 2.12
LINC01960-201ENST00000563759 BCL2L13Q9BXK5 485 aa28.29■■■□□ 2.12
LINC01960-201ENST00000563759 CYP27B1O15528 508 aa28.28■■■□□ 2.12
LINC01960-201ENST00000563759 TWISTNBQ3B726 338 aaPredicted RBP28.28■■■□□ 2.12
LINC01960-201ENST00000563759 KDM6AO15550 1401 aaPredicted RBP28.28■■■□□ 2.12
LINC01960-201ENST00000563759 BABAM1Q9NWV8 329 aa28.27■■■□□ 2.12
LINC01960-201ENST00000563759 ELL2O00472 640 aaPredicted RBP28.27■■■□□ 2.12
LINC01960-201ENST00000563759 TSPYL6Q8N831 410 aa28.27■■■□□ 2.12
LINC01960-201ENST00000563759 NGLY1Q96IV0 654 aa28.27■■■□□ 2.12
LINC01960-201ENST00000563759 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.27■■■□□ 2.12
LINC01960-201ENST00000563759 DISP2A7MBM2 1401 aa28.26■■■□□ 2.11
LINC01960-201ENST00000563759 HSP90AB1P08238 724 aaKnown RBP28.26■■■□□ 2.11
LINC01960-201ENST00000563759 CANXP27824 592 aaKnown RBP28.26■■■□□ 2.11
LINC01960-201ENST00000563759 C8orf58Q8NAV2 365 aa28.26■■■□□ 2.11
LINC01960-201ENST00000563759 ZNF428Q96B54 188 aa28.26■■■□□ 2.11
LINC01960-201ENST00000563759 SMC4Q9NTJ3 1288 aa28.26■■■□□ 2.11
LINC01960-201ENST00000563759 DCAF5Q96JK2 942 aa28.24■■■□□ 2.11
LINC01960-201ENST00000563759 SPATA31A1Q5TZJ5 1347 aa28.23■■■□□ 2.11
LINC01960-201ENST00000563759 VAMP4O75379 141 aa28.23■■■□□ 2.11
LINC01960-201ENST00000563759 ERICH6BQ5W0A0 696 aa28.23■■■□□ 2.11
LINC01960-201ENST00000563759 KRT24Q2M2I5 525 aa28.23■■■□□ 2.11
LINC01960-201ENST00000563759 MEX3CQ5U5Q3 659 aaKnown RBP28.23■■■□□ 2.11
LINC01960-201ENST00000563759 SSH1Q8WYL5 1049 aa28.23■■■□□ 2.11
LINC01960-201ENST00000563759 FRAT1Q92837 279 aaPredicted RBP28.23■■■□□ 2.11
LINC01960-201ENST00000563759 CCDC9Q9Y3X0 531 aaKnown RBP28.23■■■□□ 2.11
LINC01960-201ENST00000563759 MRC1P22897 1456 aa28.23■■■□□ 2.11
LINC01960-201ENST00000563759 ALDH1L2Q3SY69 923 aa28.21■■■□□ 2.11
LINC01960-201ENST00000563759 UNC5CLQ8IV45 518 aa28.21■■■□□ 2.11
LINC01960-201ENST00000563759 BTBD11A6QL63 1104 aa28.21■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms