RNA–Protein interactions for RNA: ENST00000563410.1

CHD9-208, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 488 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-208	ENST00000563410	QSER1	Q2KHR3	1735 aa		29.25	■■■□□ 2.27
CHD9-208	ENST00000563410	SGIP1	Q9BQI5	828 aa		29.24	■■■□□ 2.27
CHD9-208	ENST00000563410	MTFR1L	Q9H019	292 aa		29.24	■■■□□ 2.27
CHD9-208	ENST00000563410	USHBP1	Q8N6Y0	703 aa		29.23	■■■□□ 2.27
CHD9-208	ENST00000563410	NSD2	O96028	1365 aa		29.23	■■■□□ 2.27
CHD9-208	ENST00000563410	TUBGCP6	Q96RT7	1819 aa		29.22	■■■□□ 2.27
CHD9-208	ENST00000563410	PRIM1	P49642	420 aa	Known RBP	29.22	■■■□□ 2.27
CHD9-208	ENST00000563410	INSR	P06213	1382 aa		29.22	■■■□□ 2.27
CHD9-208	ENST00000563410	SMG6	Q86US8	1419 aa	Known RBP	29.21	■■■□□ 2.27
CHD9-208	ENST00000563410	HSP90AB2P	Q58FF8	381 aa		29.21	■■■□□ 2.27
CHD9-208	ENST00000563410	NSD3	Q9BZ95	1437 aa		29.2	■■■□□ 2.27
CHD9-208	ENST00000563410	SLC27A3	Q5K4L6	730 aa		29.2	■■■□□ 2.26
CHD9-208	ENST00000563410	AKT1S1	Q96B36	256 aa		29.2	■■■□□ 2.26
CHD9-208	ENST00000563410	SYTL4	Q96C24	671 aa	Predicted RBP	29.2	■■■□□ 2.26
CHD9-208	ENST00000563410	CLSPN	Q9HAW4	1339 aa		29.2	■■■□□ 2.26
CHD9-208	ENST00000563410	FLT4	P35916	1363 aa		29.19	■■■□□ 2.26
CHD9-208	ENST00000563410	KIF24	Q5T7B8	1368 aa		29.19	■■■□□ 2.26
CHD9-208	ENST00000563410	CGNL1	Q0VF96	1302 aa		29.18	■■■□□ 2.26
CHD9-208	ENST00000563410	YY1	P25490	414 aa		29.17	■■■□□ 2.26
CHD9-208	ENST00000563410	MAP2	P11137	1827 aa	Known RBP	29.17	■■■□□ 2.26
CHD9-208	ENST00000563410	ANKRD26	Q9UPS8	1709 aa		29.17	■■■□□ 2.26
CHD9-208	ENST00000563410	UTRN	P46939	3433 aa		29.16	■■■□□ 2.26
CHD9-208	ENST00000563410	COL24A1	Q17RW2	1714 aa		29.15	■■■□□ 2.26
CHD9-208	ENST00000563410	DCAF8L1	A6NGE4	600 aa		29.15	■■■□□ 2.26
CHD9-208	ENST00000563410	KCNQ4	P56696	695 aa		29.15	■■■□□ 2.26
CHD9-208	ENST00000563410	RAPGEF4	Q8WZA2	1011 aa		29.15	■■■□□ 2.26
CHD9-208	ENST00000563410	PCGF6	Q9BYE7	350 aa		29.15	■■■□□ 2.26
CHD9-208	ENST00000563410	FHDC1	Q9C0D6	1143 aa	Predicted RBP	29.15	■■■□□ 2.26
CHD9-208	ENST00000563410	SYT17	Q9BSW7	474 aa		29.14	■■■□□ 2.26
CHD9-208	ENST00000563410	EMILIN1	Q9Y6C2	1016 aa		29.14	■■■□□ 2.26
CHD9-208	ENST00000563410	TAT	P17735	454 aa	Predicted RBP	29.13	■■■□□ 2.25
CHD9-208	ENST00000563410	PNPLA7	Q6ZV29	1317 aa		29.12	■■■□□ 2.25
CHD9-208	ENST00000563410	PKD1L3	Q7Z443	1732 aa		29.11	■■■□□ 2.25
CHD9-208	ENST00000563410	ARX	Q96QS3	562 aa		29.1	■■■□□ 2.25
CHD9-208	ENST00000563410	ITGB4	P16144	1822 aa		29.09	■■■□□ 2.25
CHD9-208	ENST00000563410	TOGARAM1	Q9Y4F4	1720 aa		29.08	■■■□□ 2.25
CHD9-208	ENST00000563410	PCDH11X	Q9BZA7	1347 aa		29.08	■■■□□ 2.25
CHD9-208	ENST00000563410	PCDH11Y	Q9BZA8	1340 aa		29.08	■■■□□ 2.25
CHD9-208	ENST00000563410	NCAPD2	Q15021	1401 aa		29.08	■■■□□ 2.25
CHD9-208	ENST00000563410	SLC16A10	Q8TF71	515 aa		29.07	■■■□□ 2.24
CHD9-208	ENST00000563410	TFCP2L1	Q9NZI6	479 aa		29.06	■■■□□ 2.24
CHD9-208	ENST00000563410	CCNL1	Q9UK58	526 aa	Predicted RBP	29.06	■■■□□ 2.24
CHD9-208	ENST00000563410	TAF1L	Q8IZX4	1826 aa		29.06	■■■□□ 2.24
CHD9-208	ENST00000563410	MAP3K5	Q99683	1374 aa		29.05	■■■□□ 2.24
CHD9-208	ENST00000563410	CYP27B1	O15528	508 aa		29.05	■■■□□ 2.24
CHD9-208	ENST00000563410	C5	P01031	1676 aa		29.04	■■■□□ 2.24
CHD9-208	ENST00000563410	WASHC2A	Q641Q2	1341 aa		29.03	■■■□□ 2.24
CHD9-208	ENST00000563410	CHD4	Q14839	1912 aa		29.03	■■■□□ 2.24
CHD9-208	ENST00000563410	PPM1G	O15355	546 aa	Predicted RBP	29.02	■■■□□ 2.24
CHD9-208	ENST00000563410	POLK	Q9UBT6	870 aa		29	■■■□□ 2.23
CHD9-208	ENST00000563410	POLR3GL	Q9BT43	218 aa		28.99	■■■□□ 2.23
CHD9-208	ENST00000563410	EYA1	Q99502	592 aa		28.98	■■■□□ 2.23
CHD9-208	ENST00000563410	MPRIP	Q6WCQ1	1025 aa		28.97	■■■□□ 2.23
CHD9-208	ENST00000563410	HSPA5	P11021	654 aa	Known RBP	28.96	■■■□□ 2.23
CHD9-208	ENST00000563410	POLD1	P28340	1107 aa		28.96	■■■□□ 2.23
CHD9-208	ENST00000563410	EIF4G2	P78344	907 aa	Known RBP eCLIP	28.96	■■■□□ 2.23
CHD9-208	ENST00000563410	PALLD	Q8WX93	1383 aa		28.96	■■■□□ 2.23
CHD9-208	ENST00000563410	COL23A1	Q86Y22	540 aa	Predicted RBP	28.95	■■■□□ 2.22
CHD9-208	ENST00000563410	NKX1-1	Q15270	411 aa	Predicted RBP	28.94	■■■□□ 2.22
CHD9-208	ENST00000563410	SPG7	Q9UQ90	795 aa		28.92	■■■□□ 2.22
CHD9-208	ENST00000563410	TNNT2	P45379	298 aa	Predicted RBP	28.91	■■■□□ 2.22
CHD9-208	ENST00000563410	PIGB	Q92521	554 aa		28.91	■■■□□ 2.22
CHD9-208	ENST00000563410	C4B	P0C0L5	1744 aa		28.91	■■■□□ 2.22
CHD9-208	ENST00000563410	GOLGB1	Q14789	3259 aa	Known RBP	28.9	■■■□□ 2.22
CHD9-208	ENST00000563410	EIF4A2	Q14240	407 aa	Known RBP	28.9	■■■□□ 2.22
CHD9-208	ENST00000563410	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	28.9	■■■□□ 2.22
CHD9-208	ENST00000563410	UBR3	Q6ZT12	1888 aa		28.89	■■■□□ 2.22
CHD9-208	ENST00000563410	KLHL34	Q8N239	644 aa		28.89	■■■□□ 2.22
CHD9-208	ENST00000563410	PANK3	Q9H999	370 aa		28.89	■■■□□ 2.22
CHD9-208	ENST00000563410	MSH5	O43196	834 aa		28.88	■■■□□ 2.21
CHD9-208	ENST00000563410	SMARCC1	Q92922	1105 aa	Predicted RBP	28.88	■■■□□ 2.21
CHD9-208	ENST00000563410	CCER1	Q8TC90	406 aa	Predicted RBP	28.86	■■■□□ 2.21
CHD9-208	ENST00000563410	NLGN2	Q8NFZ4	835 aa		28.85	■■■□□ 2.21
CHD9-208	ENST00000563410	PHKG2	P15735	406 aa		28.84	■■■□□ 2.21
CHD9-208	ENST00000563410	HMGB2	P26583	209 aa	Known RBP	28.84	■■■□□ 2.21
CHD9-208	ENST00000563410	ZNF784	Q8NCA9	323 aa	Predicted RBP	28.84	■■■□□ 2.21
CHD9-208	ENST00000563410	GPR162	Q16538	588 aa		28.83	■■■□□ 2.21
CHD9-208	ENST00000563410	MSL1	Q68DK7	614 aa		28.83	■■■□□ 2.21
CHD9-208	ENST00000563410	IFNL2	Q8IZJ0	200 aa		28.83	■■■□□ 2.21
CHD9-208	ENST00000563410	AMIGO3	Q86WK7	504 aa		28.82	■■■□□ 2.2
CHD9-208	ENST00000563410	FLAD1	Q8NFF5	587 aa		28.82	■■■□□ 2.2
CHD9-208	ENST00000563410	IGSF1	Q8N6C5	1336 aa		28.82	■■■□□ 2.2
CHD9-208	ENST00000563410	PLEKHG2	Q9H7P9	1386 aa		28.82	■■■□□ 2.2
CHD9-208	ENST00000563410	TMOD3	Q9NYL9	352 aa		28.8	■■■□□ 2.2
CHD9-208	ENST00000563410	LOC102724428	A0A0B4J2F2	783 aa		28.79	■■■□□ 2.2
CHD9-208	ENST00000563410	SIK1	P57059	783 aa		28.79	■■■□□ 2.2
CHD9-208	ENST00000563410	AK7	Q96M32	723 aa		28.79	■■■□□ 2.2
CHD9-208	ENST00000563410	ASAP1	Q9ULH1	1129 aa		28.79	■■■□□ 2.2
CHD9-208	ENST00000563410	SMIM5	Q71RC9	77 aa		28.77	■■■□□ 2.2
CHD9-208	ENST00000563410	LINC00116	Q8NCU8	138 aa		28.77	■■■□□ 2.2
CHD9-208	ENST00000563410	PELP1	Q8IZL8	1130 aa	Known RBP	28.76	■■■□□ 2.19
CHD9-208	ENST00000563410	ITPK1	Q13572	414 aa		28.74	■■■□□ 2.19
CHD9-208	ENST00000563410	MORC1	Q86VD1	984 aa		28.74	■■■□□ 2.19
CHD9-208	ENST00000563410	ATG3	Q9NT62	314 aa		28.74	■■■□□ 2.19
CHD9-208	ENST00000563410	PHF14	O94880	888 aa		28.73	■■■□□ 2.19
CHD9-208	ENST00000563410	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	28.72	■■■□□ 2.19
CHD9-208	ENST00000563410	YBX3	P16989	372 aa	Known RBP eCLIP	28.72	■■■□□ 2.19
CHD9-208	ENST00000563410	ZNF831	Q5JPB2	1677 aa		28.71	■■■□□ 2.19
CHD9-208	ENST00000563410	SSFA2	P28290	1259 aa		28.71	■■■□□ 2.19
CHD9-208	ENST00000563410	ATP6V1A	P38606	617 aa		28.7	■■■□□ 2.18

Retrieved 100 of 20,778 RNA–protein pairs in 158.3 ms