RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 WDR43Q15061 677 aaKnown RBP eCLIP13.44□□□□□ -0.26
USP3-216ENST00000559873 PCDH11XQ9BZA7 1347 aa13.43□□□□□ -0.26
USP3-216ENST00000559873 PCDH11YQ9BZA8 1340 aa13.43□□□□□ -0.26
USP3-216ENST00000559873 NEFMP07197 916 aa13.43□□□□□ -0.26
USP3-216ENST00000559873 KRT27Q7Z3Y8 459 aa13.43□□□□□ -0.26
USP3-216ENST00000559873 PNNQ9H307 717 aaKnown RBP13.43□□□□□ -0.26
USP3-216ENST00000559873 HMOX1P09601 288 aa13.42□□□□□ -0.26
USP3-216ENST00000559873 AMOTQ4VCS5 1084 aa13.42□□□□□ -0.26
USP3-216ENST00000559873 ZCRB1Q8TBF4 217 aaKnown RBP13.42□□□□□ -0.26
USP3-216ENST00000559873 MRS2Q9HD23 443 aa13.42□□□□□ -0.26
USP3-216ENST00000559873 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.42□□□□□ -0.269e-8■□□□□ 11.1
USP3-216ENST00000559873 SPG7Q9UQ90 795 aa13.42□□□□□ -0.26
USP3-216ENST00000559873 PKD1L3Q7Z443 1732 aa13.42□□□□□ -0.26
USP3-216ENST00000559873 AEBP1Q8IUX7 1158 aa13.41□□□□□ -0.26
USP3-216ENST00000559873 FCHSD2O94868 740 aa13.4□□□□□ -0.26
USP3-216ENST00000559873 PLEKHO1Q53GL0 409 aaPredicted RBP13.4□□□□□ -0.26
USP3-216ENST00000559873 MAPK8IP3Q9UPT6 1336 aa13.39□□□□□ -0.27
USP3-216ENST00000559873 PRKAR2BP31323 418 aa13.39□□□□□ -0.27
USP3-216ENST00000559873 BRWD3Q6RI45 1802 aa13.39□□□□□ -0.27
USP3-216ENST00000559873 CCER2I3L3R5 266 aa13.38□□□□□ -0.27
USP3-216ENST00000559873 RSPH6AQ9H0K4 717 aa13.38□□□□□ -0.27
USP3-216ENST00000559873 C1orf141Q5JVX7 400 aa13.37□□□□□ -0.27
USP3-216ENST00000559873 FAM196AQ6ZSG2 479 aa13.37□□□□□ -0.27
USP3-216ENST00000559873 GAS2L2Q8NHY3 880 aa13.37□□□□□ -0.27
USP3-216ENST00000559873 BCL9O00512 1426 aa13.37□□□□□ -0.27
USP3-216ENST00000559873 HSP90AB1P08238 724 aaKnown RBP13.36□□□□□ -0.27
USP3-216ENST00000559873 ZNF530Q6P9A1 599 aaPredicted RBP13.36□□□□□ -0.27
USP3-216ENST00000559873 IFNL2Q8IZJ0 200 aa13.36□□□□□ -0.27
USP3-216ENST00000559873 MARCH10Q8NA82 808 aaPredicted RBP13.36□□□□□ -0.27
USP3-216ENST00000559873 DDX54Q8TDD1 881 aaKnown RBP13.36□□□□□ -0.27
USP3-216ENST00000559873 SHANK3Q9BYB0 1731 aa13.36□□□□□ -0.27
USP3-216ENST00000559873 PHKG2P15735 406 aa13.33□□□□□ -0.28
USP3-216ENST00000559873 AKAP4Q5JQC9 854 aa13.33□□□□□ -0.28
USP3-216ENST00000559873 ILDR2Q71H61 639 aa13.33□□□□□ -0.28
USP3-216ENST00000559873 CYP27B1O15528 508 aa13.32□□□□□ -0.28
USP3-216ENST00000559873 SF3B2Q13435 895 aaKnown RBP13.32□□□□□ -0.28
USP3-216ENST00000559873 PNISRQ8TF01 805 aaKnown RBP13.32□□□□□ -0.28
USP3-216ENST00000559873 DCAF5Q96JK2 942 aa13.32□□□□□ -0.28
USP3-216ENST00000559873 MAP3K5Q99683 1374 aa13.32□□□□□ -0.28
USP3-216ENST00000559873 NKX1-1Q15270 411 aaPredicted RBP13.31□□□□□ -0.28
USP3-216ENST00000559873 MTHFSDQ2M296 383 aaKnown RBP13.31□□□□□ -0.28
USP3-216ENST00000559873 CCDC184Q52MB2 194 aa13.31□□□□□ -0.28
USP3-216ENST00000559873 RUNDC1Q96C34 613 aa13.31□□□□□ -0.28
USP3-216ENST00000559873 ADAMTS8Q9UP79 889 aa13.31□□□□□ -0.28
USP3-216ENST00000559873 NHSQ6T4R5 1651 aa13.31□□□□□ -0.28
USP3-216ENST00000559873 DOT1LQ8TEK3 1739 aa13.3□□□□□ -0.28
USP3-216ENST00000559873 GNAT3A8MTJ3 354 aa13.3□□□□□ -0.28
USP3-216ENST00000559873 LMOD3Q0VAK6 560 aa13.3□□□□□ -0.28
USP3-216ENST00000559873 FAM182BQ5T319 152 aa13.3□□□□□ -0.28
USP3-216ENST00000559873 CCDC125Q86Z20 511 aa13.3□□□□□ -0.28
USP3-216ENST00000559873 RTF1Q92541 710 aaKnown RBP13.3□□□□□ -0.28
USP3-216ENST00000559873 PLEKHF1Q96S99 279 aa13.3□□□□□ -0.28
USP3-216ENST00000559873 NFE2L2Q16236 605 aa13.29□□□□□ -0.28
USP3-216ENST00000559873 CCDC146Q8IYE0 955 aa13.29□□□□□ -0.28
USP3-216ENST00000559873 FAM9BQ8IZU0 186 aa13.29□□□□□ -0.28
USP3-216ENST00000559873 MIER1Q8N108 512 aa13.29□□□□□ -0.28
USP3-216ENST00000559873 PHACTR3Q96KR7 559 aa13.29□□□□□ -0.28
USP3-216ENST00000559873 ERVV-2B6SEH9 535 aa13.28□□□□□ -0.28
USP3-216ENST00000559873 HTATSF1O43719 755 aaKnown RBP13.28□□□□□ -0.28
USP3-216ENST00000559873 SYTL4Q96C24 671 aaPredicted RBP13.28□□□□□ -0.28
USP3-216ENST00000559873 BCL11BQ9C0K0 894 aaPredicted RBP13.28□□□□□ -0.28
USP3-216ENST00000559873 KDM6AO15550 1401 aaPredicted RBP13.28□□□□□ -0.28
USP3-216ENST00000559873 TRIM37O94972 964 aa13.27□□□□□ -0.29
USP3-216ENST00000559873 ACSBG1Q96GR2 724 aa13.27□□□□□ -0.29
USP3-216ENST00000559873 TMOD3Q9NYL9 352 aa13.27□□□□□ -0.29
USP3-216ENST00000559873 MRC1P22897 1456 aa13.26□□□□□ -0.29
USP3-216ENST00000559873 CABP4P57796 275 aa13.26□□□□□ -0.29
USP3-216ENST00000559873 MPRIPQ6WCQ1 1025 aa13.26□□□□□ -0.29
USP3-216ENST00000559873 SBF2Q86WG5 1849 aa13.26□□□□□ -0.29
USP3-216ENST00000559873 TOGARAM1Q9Y4F4 1720 aa13.26□□□□□ -0.29
USP3-216ENST00000559873 EP400Q96L91 3159 aa13.26□□□□□ -0.29
USP3-216ENST00000559873 SCN11AQ9UI33 1791 aa13.25□□□□□ -0.29
USP3-216ENST00000559873 TNS1Q9HBL0 1735 aaKnown RBP13.25□□□□□ -0.29
USP3-216ENST00000559873 ADAMTS7Q9UKP4 1686 aa13.25□□□□□ -0.29
USP3-216ENST00000559873 RNMTO43148 476 aaKnown RBP13.25□□□□□ -0.29
USP3-216ENST00000559873 TMPOP42166 694 aaKnown RBP13.25□□□□□ -0.29
USP3-216ENST00000559873 BAG6P46379 1132 aa13.25□□□□□ -0.29
USP3-216ENST00000559873 TEFQ10587 303 aa13.25□□□□□ -0.29
USP3-216ENST00000559873 KAT6BQ8WYB5 2073 aa13.25□□□□□ -0.29
USP3-216ENST00000559873 PRIM1P49642 420 aaKnown RBP13.24□□□□□ -0.29
USP3-216ENST00000559873 RIPK4P57078 832 aa13.24□□□□□ -0.29
USP3-216ENST00000559873 UPF1Q92900 1129 aaKnown RBP eCLIP13.24□□□□□ -0.29
USP3-216ENST00000559873 CEMIPQ8WUJ3 1361 aa13.23□□□□□ -0.29
USP3-216ENST00000559873 RGPD3A6NKT7 1758 aaPredicted RBP13.23□□□□□ -0.29
USP3-216ENST00000559873 RGPD4Q7Z3J3 1758 aa13.23□□□□□ -0.29
USP3-216ENST00000559873 APAF1O14727 1248 aa13.23□□□□□ -0.29
USP3-216ENST00000559873 APBA3O96018 575 aa13.23□□□□□ -0.29
USP3-216ENST00000559873 HMGB2P26583 209 aaKnown RBP13.23□□□□□ -0.29
USP3-216ENST00000559873 NGEFQ8N5V2 710 aa13.23□□□□□ -0.29
USP3-216ENST00000559873 SMARCC1Q92922 1105 aaPredicted RBP13.23□□□□□ -0.29
USP3-216ENST00000559873 SLC52A2Q9HAB3 445 aa13.23□□□□□ -0.29
USP3-216ENST00000559873 BTAF1O14981 1849 aa13.23□□□□□ -0.29
USP3-216ENST00000559873 SOCS7O14512 581 aa13.22□□□□□ -0.29
USP3-216ENST00000559873 KCNQ2O43526 872 aa13.22□□□□□ -0.29
USP3-216ENST00000559873 CALD1Q05682 793 aaKnown RBP13.22□□□□□ -0.29
USP3-216ENST00000559873 NEUROD2Q15784 382 aa13.22□□□□□ -0.29
USP3-216ENST00000559873 NCBP3Q53F19 620 aaKnown RBP13.22□□□□□ -0.29
USP3-216ENST00000559873 DLG5Q8TDM6 1919 aa13.21□□□□□ -0.29
USP3-216ENST00000559873 ITGB4P16144 1822 aa13.21□□□□□ -0.29
USP3-216ENST00000559873 RRP7AQ9Y3A4 280 aaKnown RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms