RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 CPDO75976 1380 aa16.32■□□□□ 0.2
USP3-213ENST00000559711 TSPYL6Q8N831 410 aa16.31■□□□□ 0.2
USP3-213ENST00000559711 CABLES1Q8TDN4 633 aa16.31■□□□□ 0.2
USP3-213ENST00000559711 ERBB3P21860 1342 aa16.31■□□□□ 0.2
USP3-213ENST00000559711 MS4A1P11836 297 aa16.3■□□□□ 0.2
USP3-213ENST00000559711 ZKSCAN2Q63HK3 967 aa16.3■□□□□ 0.2
USP3-213ENST00000559711 C8orf58Q8NAV2 365 aa16.3■□□□□ 0.2
USP3-213ENST00000559711 PANK1Q8TE04 598 aa16.3■□□□□ 0.2
USP3-213ENST00000559711 MAP3K5Q99683 1374 aa16.3■□□□□ 0.2
USP3-213ENST00000559711 ABCC6O95255 1503 aa16.29■□□□□ 0.2
USP3-213ENST00000559711 KIAA0232Q92628 1395 aa16.29■□□□□ 0.2
USP3-213ENST00000559711 AAMPQ13685 434 aa16.29■□□□□ 0.2
USP3-213ENST00000559711 TWISTNBQ3B726 338 aaPredicted RBP16.29■□□□□ 0.2
USP3-213ENST00000559711 AMOTQ4VCS5 1084 aa16.29■□□□□ 0.2
USP3-213ENST00000559711 KIF16BQ96L93 1317 aa16.28■□□□□ 0.2
USP3-213ENST00000559711 RLBP1P12271 317 aa16.28■□□□□ 0.2
USP3-213ENST00000559711 PLEKHO1Q53GL0 409 aaPredicted RBP16.28■□□□□ 0.2
USP3-213ENST00000559711 IL17REQ8NFR9 667 aa16.28■□□□□ 0.2
USP3-213ENST00000559711 IPO8O15397 1037 aaKnown RBP16.27■□□□□ 0.2
USP3-213ENST00000559711 HAP1P54257 671 aaPredicted RBP16.27■□□□□ 0.2
USP3-213ENST00000559711 ATF7IPQ6VMQ6 1270 aa16.27■□□□□ 0.2
USP3-213ENST00000559711 BABAM1Q9NWV8 329 aa16.27■□□□□ 0.2
USP3-213ENST00000559711 NOB1Q9ULX3 412 aaKnown RBP16.27■□□□□ 0.2
USP3-213ENST00000559711 COG6Q9Y2V7 657 aa16.27■□□□□ 0.2
USP3-213ENST00000559711 DZIP1LQ8IYY4 767 aaKnown RBP16.27■□□□□ 0.19
USP3-213ENST00000559711 MRPL50Q8N5N7 158 aaKnown RBP16.27■□□□□ 0.19
USP3-213ENST00000559711 TNNQ9UQP3 1299 aa16.27■□□□□ 0.19
USP3-213ENST00000559711 TRIM27P14373 513 aa16.26■□□□□ 0.19
USP3-213ENST00000559711 CAMTA1Q9Y6Y1 1673 aa16.26■□□□□ 0.19
USP3-213ENST00000559711 CRYBG1Q9Y4K1 1723 aa16.25■□□□□ 0.19
USP3-213ENST00000559711 ELL2O00472 640 aaPredicted RBP16.25■□□□□ 0.19
USP3-213ENST00000559711 AKAP4Q5JQC9 854 aa16.25■□□□□ 0.19
USP3-213ENST00000559711 ARHGAP45Q92619 1136 aa16.25■□□□□ 0.19
USP3-213ENST00000559711 LTBP4Q8N2S1 1624 aa16.25■□□□□ 0.19
USP3-213ENST00000559711 COL18A1P39060 1754 aa16.25■□□□□ 0.19
USP3-213ENST00000559711 CEMIPQ8WUJ3 1361 aa16.25■□□□□ 0.19
USP3-213ENST00000559711 CHRNA2Q15822 529 aa16.24■□□□□ 0.19
USP3-213ENST00000559711 CLUAP1Q96AJ1 413 aa16.24■□□□□ 0.19
USP3-213ENST00000559711 TSHZ2Q9NRE2 1034 aa16.24■□□□□ 0.19
USP3-213ENST00000559711 TSPYL4Q9UJ04 414 aa16.24■□□□□ 0.19
USP3-213ENST00000559711 LMO7Q8WWI1 1683 aa16.24■□□□□ 0.19
USP3-213ENST00000559711 KDM2BQ8NHM5 1336 aa16.24■□□□□ 0.19
USP3-213ENST00000559711 MVPQ14764 893 aaKnown RBP16.24■□□□□ 0.19
USP3-213ENST00000559711 TAF7Q15545 349 aaPredicted RBP16.24■□□□□ 0.19
USP3-213ENST00000559711 FTSJ3Q8IY81 847 aaKnown RBP16.24■□□□□ 0.19
USP3-213ENST00000559711 PLEKHG2Q9H7P9 1386 aa16.23■□□□□ 0.19
USP3-213ENST00000559711 ZNF530Q6P9A1 599 aaPredicted RBP16.23■□□□□ 0.19
USP3-213ENST00000559711 NLRP2Q9NX02 1062 aa16.23■□□□□ 0.19
USP3-213ENST00000559711 MIS18AQ9NYP9 233 aa16.23■□□□□ 0.19
USP3-213ENST00000559711 LRRC37A3O60309 1634 aa16.23■□□□□ 0.19
USP3-213ENST00000559711 NHSL1Q5SYE7 1610 aa16.23■□□□□ 0.19
USP3-213ENST00000559711 KRT24Q2M2I5 525 aa16.21■□□□□ 0.19
USP3-213ENST00000559711 CENPQQ7L2Z9 268 aaPredicted RBP16.21■□□□□ 0.19
USP3-213ENST00000559711 PRDM11Q9NQV5 511 aa16.21■□□□□ 0.19
USP3-213ENST00000559711 RGPD2P0DJD1 1756 aa16.21■□□□□ 0.18
USP3-213ENST00000559711 CSB-PGBD3P0DP91 1061 aa16.21■□□□□ 0.18
USP3-213ENST00000559711 LGR6Q9HBX8 967 aa16.21■□□□□ 0.18
USP3-213ENST00000559711 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.21■□□□□ 0.181e-7■□□□□ 10.9
USP3-213ENST00000559711 SOS1Q07889 1333 aaPredicted RBP16.2■□□□□ 0.18
USP3-213ENST00000559711 RAPGEF4Q8WZA2 1011 aa16.2■□□□□ 0.18
USP3-213ENST00000559711 C1orf141Q5JVX7 400 aa16.19■□□□□ 0.18
USP3-213ENST00000559711 OVOS2A0A0G2JMS6 1433 aa16.19■□□□□ 0.18
USP3-213ENST00000559711 RNMTO43148 476 aaKnown RBP16.18■□□□□ 0.18
USP3-213ENST00000559711 TATP17735 454 aaPredicted RBP16.18■□□□□ 0.18
USP3-213ENST00000559711 DDX19BQ9UMR2 479 aa16.18■□□□□ 0.18
USP3-213ENST00000559711 TMEM57Q8N5G2 664 aa16.18■□□□□ 0.18
USP3-213ENST00000559711 WDR17Q8IZU2 1322 aa16.17■□□□□ 0.18
USP3-213ENST00000559711 RGPD5Q99666 1765 aa16.17■□□□□ 0.18
USP3-213ENST00000559711 TCERG1O14776 1098 aaKnown RBP16.17■□□□□ 0.18
USP3-213ENST00000559711 MPRIPQ6WCQ1 1025 aa16.17■□□□□ 0.18
USP3-213ENST00000559711 API5Q9BZZ5 524 aaKnown RBP16.17■□□□□ 0.18
USP3-213ENST00000559711 SPG7Q9UQ90 795 aa16.16■□□□□ 0.18
USP3-213ENST00000559711 FAM208AQ9UK61 1670 aaKnown RBP16.16■□□□□ 0.18
USP3-213ENST00000559711 ABCC4O15439 1325 aa16.16■□□□□ 0.18
USP3-213ENST00000559711 AHDC1Q5TGY3 1603 aaPredicted RBP16.16■□□□□ 0.18
USP3-213ENST00000559711 TEFQ10587 303 aa16.15■□□□□ 0.18
USP3-213ENST00000559711 ITPRIPQ8IWB1 547 aa16.15■□□□□ 0.18
USP3-213ENST00000559711 PCDHB15Q9Y5E8 787 aa16.15■□□□□ 0.18
USP3-213ENST00000559711 MEGF6O75095 1541 aa16.15■□□□□ 0.18
USP3-213ENST00000559711 IGHDP01880 384 aa16.14■□□□□ 0.18
USP3-213ENST00000559711 ZBTB40Q9NUA8 1239 aa16.14■□□□□ 0.18
USP3-213ENST00000559711 COL5A2P05997 1499 aaPredicted RBP16.14■□□□□ 0.17
USP3-213ENST00000559711 PTPRCP08575 1304 aa16.14■□□□□ 0.17
USP3-213ENST00000559711 ROBO1Q9Y6N7 1651 aa16.13■□□□□ 0.17
USP3-213ENST00000559711 PHKG2P15735 406 aa16.13■□□□□ 0.17
USP3-213ENST00000559711 EIF4A1P60842 406 aaKnown RBP16.13■□□□□ 0.17
USP3-213ENST00000559711 CARD10Q9BWT7 1032 aa16.13■□□□□ 0.17
USP3-213ENST00000559711 SLC4A2P04920 1241 aa16.12■□□□□ 0.17
USP3-213ENST00000559711 HOXB7P09629 217 aa16.12■□□□□ 0.17
USP3-213ENST00000559711 CCDC30Q5VVM6 783 aa16.12■□□□□ 0.17
USP3-213ENST00000559711 TOM1L2Q6ZVM7 507 aa16.12■□□□□ 0.17
USP3-213ENST00000559711 IFNL2Q8IZJ0 200 aa16.12■□□□□ 0.17
USP3-213ENST00000559711 CHMP4BQ9H444 224 aaKnown RBP16.12■□□□□ 0.17
USP3-213ENST00000559711 ABCA3Q99758 1704 aa16.12■□□□□ 0.17
USP3-213ENST00000559711 BTBD11A6QL63 1104 aa16.11■□□□□ 0.17
USP3-213ENST00000559711 ZBTB7BO15156 539 aaPredicted RBP16.11■□□□□ 0.17
USP3-213ENST00000559711 INTS3Q68E01 1043 aaKnown RBP16.11■□□□□ 0.17
USP3-213ENST00000559711 CHMP4AQ9BY43 222 aa16.11■□□□□ 0.17
USP3-213ENST00000559711 ADAMTS7Q9UKP4 1686 aa16.1■□□□□ 0.17
USP3-213ENST00000559711 STK31Q9BXU1 1019 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms