RNA–Protein interactions for RNA: ENST00000559061.5

SNX1-204, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-204ENST00000559061 DDB1Q16531 1140 aa15.5■□□□□ 0.07
SNX1-204ENST00000559061 DOT1LQ8TEK3 1739 aa15.5■□□□□ 0.07
SNX1-204ENST00000559061 NHSQ6T4R5 1651 aa15.5■□□□□ 0.07
SNX1-204ENST00000559061 PRKRIP1Q9H875 184 aaPredicted RBP15.49■□□□□ 0.07
SNX1-204ENST00000559061 PTF1AQ7RTS3 328 aa15.48■□□□□ 0.07
SNX1-204ENST00000559061 RALBP1Q15311 655 aa15.47■□□□□ 0.07
SNX1-204ENST00000559061 DIAPH1O60610 1272 aaKnown RBP15.46■□□□□ 0.07
SNX1-204ENST00000559061 EXOC5O00471 708 aa15.45■□□□□ 0.06
SNX1-204ENST00000559061 CYP27B1O15528 508 aa15.45■□□□□ 0.06
SNX1-204ENST00000559061 PDE3BQ13370 1112 aa15.45■□□□□ 0.06
SNX1-204ENST00000559061 SULT6B1Q6IMI4 303 aa15.45■□□□□ 0.06
SNX1-204ENST00000559061 VIRMAQ69YN4 1812 aaKnown RBP15.45■□□□□ 0.06
SNX1-204ENST00000559061 MYBBP1AQ9BQG0 1328 aaKnown RBP15.44■□□□□ 0.06
SNX1-204ENST00000559061 ZCRB1Q8TBF4 217 aaKnown RBP15.44■□□□□ 0.06
SNX1-204ENST00000559061 BTAF1O14981 1849 aa15.44■□□□□ 0.06
SNX1-204ENST00000559061 ITGB4P16144 1822 aa15.44■□□□□ 0.06
SNX1-204ENST00000559061 PLEKHG2Q9H7P9 1386 aa15.44■□□□□ 0.06
SNX1-204ENST00000559061 ADAMTS7Q9UKP4 1686 aa15.44■□□□□ 0.06
SNX1-204ENST00000559061 HMOX1P09601 288 aa15.43■□□□□ 0.06
SNX1-204ENST00000559061 TATP17735 454 aaPredicted RBP15.43■□□□□ 0.06
SNX1-204ENST00000559061 RAPGEF4Q8WZA2 1011 aa15.43■□□□□ 0.06
SNX1-204ENST00000559061 RREB1Q92766 1687 aa15.42■□□□□ 0.06
SNX1-204ENST00000559061 CCDC184Q52MB2 194 aa15.42■□□□□ 0.06
SNX1-204ENST00000559061 FAM196AQ6ZSG2 479 aa15.42■□□□□ 0.06
SNX1-204ENST00000559061 RGPD3A6NKT7 1758 aaPredicted RBP15.41■□□□□ 0.06
SNX1-204ENST00000559061 RGPD4Q7Z3J3 1758 aa15.41■□□□□ 0.06
SNX1-204ENST00000559061 TRIM37O94972 964 aa15.41■□□□□ 0.06
SNX1-204ENST00000559061 DDX54Q8TDD1 881 aaKnown RBP15.41■□□□□ 0.06
SNX1-204ENST00000559061 RSPH6AQ9H0K4 717 aa15.41■□□□□ 0.06
SNX1-204ENST00000559061 KDM6AO15550 1401 aaPredicted RBP15.41■□□□□ 0.06
SNX1-204ENST00000559061 SCN11AQ9UI33 1791 aa15.4■□□□□ 0.06
SNX1-204ENST00000559061 KCNQ2O43526 872 aa15.4■□□□□ 0.06
SNX1-204ENST00000559061 PCDH11XQ9BZA7 1347 aa15.4■□□□□ 0.06
SNX1-204ENST00000559061 PCDH11YQ9BZA8 1340 aa15.4■□□□□ 0.06
SNX1-204ENST00000559061 DEFB132Q7Z7B7 95 aa15.39■□□□□ 0.05
SNX1-204ENST00000559061 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.39■□□□□ 0.056e-7■□□□□ 10
SNX1-204ENST00000559061 NUP188Q5SRE5 1749 aa15.39■□□□□ 0.05
SNX1-204ENST00000559061 U2SURPO15042 1029 aaKnown RBP15.38■□□□□ 0.05
SNX1-204ENST00000559061 PHKG2P15735 406 aa15.38■□□□□ 0.05
SNX1-204ENST00000559061 NKX1-1Q15270 411 aaPredicted RBP15.38■□□□□ 0.05
SNX1-204ENST00000559061 CFAP53Q96M91 514 aa15.38■□□□□ 0.05
SNX1-204ENST00000559061 DLG5Q8TDM6 1919 aa15.37■□□□□ 0.05
SNX1-204ENST00000559061 ACSBG1Q96GR2 724 aa15.37■□□□□ 0.05
SNX1-204ENST00000559061 PHACTR3Q96KR7 559 aa15.37■□□□□ 0.05
SNX1-204ENST00000559061 LY75O60449 1722 aa15.37■□□□□ 0.05
SNX1-204ENST00000559061 MTHFSDQ2M296 383 aaKnown RBP15.36■□□□□ 0.05
SNX1-204ENST00000559061 MRC1P22897 1456 aa15.35■□□□□ 0.05
SNX1-204ENST00000559061 SIPA1L3O60292 1781 aaPredicted RBP15.35■□□□□ 0.05
SNX1-204ENST00000559061 PRKAR2BP31323 418 aa15.35■□□□□ 0.05
SNX1-204ENST00000559061 PLEKHF1Q96S99 279 aa15.35■□□□□ 0.05
SNX1-204ENST00000559061 BCL11BQ9C0K0 894 aaPredicted RBP15.35■□□□□ 0.05
SNX1-204ENST00000559061 SPG7Q9UQ90 795 aa15.35■□□□□ 0.05
SNX1-204ENST00000559061 U2AF1L5P0DN76 240 aaPredicted RBP15.34■□□□□ 0.05
SNX1-204ENST00000559061 U2AF1Q01081 240 aaKnown RBP eCLIP15.34■□□□□ 0.05
SNX1-204ENST00000559061 CCDC125Q86Z20 511 aa15.34■□□□□ 0.05
SNX1-204ENST00000559061 PAPPAQ13219 1627 aa15.34■□□□□ 0.05
SNX1-204ENST00000559061 KAT6BQ8WYB5 2073 aa15.33■□□□□ 0.04
SNX1-204ENST00000559061 PLEKHO1Q53GL0 409 aaPredicted RBP15.33■□□□□ 0.04
SNX1-204ENST00000559061 ZNF530Q6P9A1 599 aaPredicted RBP15.33■□□□□ 0.04
SNX1-204ENST00000559061 CAMKK2Q96RR4 588 aa15.33■□□□□ 0.04
SNX1-204ENST00000559061 PRIM1P49642 420 aaKnown RBP15.32■□□□□ 0.04
SNX1-204ENST00000559061 EN1Q05925 392 aaPredicted RBP15.32■□□□□ 0.04
SNX1-204ENST00000559061 AMOTQ4VCS5 1084 aa15.32■□□□□ 0.04
SNX1-204ENST00000559061 IFNL2Q8IZJ0 200 aa15.32■□□□□ 0.04
SNX1-204ENST00000559061 PROM2Q8N271 834 aa15.32■□□□□ 0.04
SNX1-204ENST00000559061 FCHSD2O94868 740 aa15.31■□□□□ 0.04
SNX1-204ENST00000559061 EZH2Q15910 746 aaKnown RBP15.31■□□□□ 0.04
SNX1-204ENST00000559061 NUDCQ9Y266 331 aa15.31■□□□□ 0.04
SNX1-204ENST00000559061 APBA3O96018 575 aa15.3■□□□□ 0.04
SNX1-204ENST00000559061 ANP32CO43423 234 aa15.29■□□□□ 0.04
SNX1-204ENST00000559061 MPRIPQ6WCQ1 1025 aa15.29■□□□□ 0.04
SNX1-204ENST00000559061 LGR6Q9HBX8 967 aa15.29■□□□□ 0.04
SNX1-204ENST00000559061 MAP3K5Q99683 1374 aa15.28■□□□□ 0.04
SNX1-204ENST00000559061 PLSCR1O15162 318 aa15.28■□□□□ 0.04
SNX1-204ENST00000559061 AKAP4Q5JQC9 854 aa15.28■□□□□ 0.04
SNX1-204ENST00000559061 PIGBQ92521 554 aa15.28■□□□□ 0.04
SNX1-204ENST00000559061 ADAMTS8Q9UP79 889 aa15.28■□□□□ 0.04
SNX1-204ENST00000559061 TAF1LQ8IZX4 1826 aa15.28■□□□□ 0.04
SNX1-204ENST00000559061 UBR2Q8IWV8 1755 aa15.28■□□□□ 0.04
SNX1-204ENST00000559061 CEMIPQ8WUJ3 1361 aa15.27■□□□□ 0.04
SNX1-204ENST00000559061 TUBGCP6Q96RT7 1819 aa15.27■□□□□ 0.04
SNX1-204ENST00000559061 BAG6P46379 1132 aa15.27■□□□□ 0.04
SNX1-204ENST00000559061 DCAF5Q96JK2 942 aa15.27■□□□□ 0.04
SNX1-204ENST00000559061 ADRA2BP18089 450 aa15.26■□□□□ 0.03
SNX1-204ENST00000559061 IL17REQ8NFR9 667 aa15.26■□□□□ 0.03
SNX1-204ENST00000559061 SYTL4Q96C24 671 aaPredicted RBP15.26■□□□□ 0.03
SNX1-204ENST00000559061 C5P01031 1676 aa15.25■□□□□ 0.03
SNX1-204ENST00000559061 CICQ96RK0 1608 aaPredicted RBP15.25■□□□□ 0.03
SNX1-204ENST00000559061 RNMTO43148 476 aaKnown RBP15.25■□□□□ 0.03
SNX1-204ENST00000559061 SF3B2Q13435 895 aaKnown RBP15.25■□□□□ 0.03
SNX1-204ENST00000559061 C1orf141Q5JVX7 400 aa15.25■□□□□ 0.03
SNX1-204ENST00000559061 CCDC146Q8IYE0 955 aa15.25■□□□□ 0.03
SNX1-204ENST00000559061 PNISRQ8TF01 805 aaKnown RBP15.25■□□□□ 0.03
SNX1-204ENST00000559061 LRRC4BQ9NT99 713 aa15.25■□□□□ 0.03
SNX1-204ENST00000559061 KCPQ6ZWJ8 1503 aa15.25■□□□□ 0.03
SNX1-204ENST00000559061 TJP1Q07157 1748 aa15.25■□□□□ 0.03
SNX1-204ENST00000559061 ZNF831Q5JPB2 1677 aa15.25■□□□□ 0.03
SNX1-204ENST00000559061 COL5A3P25940 1745 aaPredicted RBP15.24■□□□□ 0.03
SNX1-204ENST00000559061 ERVV-2B6SEH9 535 aa15.24■□□□□ 0.03
SNX1-204ENST00000559061 GAS2L2Q8NHY3 880 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms