RNA–Protein interactions for RNA: ENST00000558970.2

GABPB1-208, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 5

Gene GABPB1, Length 730 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-208ENST00000558970 SEPT12Q8IYM1 358 aa16.6■□□□□ 0.25
GABPB1-208ENST00000558970 THRAP3Q9Y2W1 955 aaKnown RBP16.6■□□□□ 0.25
GABPB1-208ENST00000558970 DISP2A7MBM2 1401 aa16.6■□□□□ 0.25
GABPB1-208ENST00000558970 NCAPD2Q15021 1401 aa16.6■□□□□ 0.25
GABPB1-208ENST00000558970 TATP17735 454 aaPredicted RBP16.59■□□□□ 0.25
GABPB1-208ENST00000558970 BARGINQ6ZT62 677 aa16.59■□□□□ 0.25
GABPB1-208ENST00000558970 DLG5Q8TDM6 1919 aa16.57■□□□□ 0.24
GABPB1-208ENST00000558970 OVOS2A0A0G2JMS6 1433 aa16.57■□□□□ 0.24
GABPB1-208ENST00000558970 DDB1Q16531 1140 aa16.57■□□□□ 0.24
GABPB1-208ENST00000558970 FAM182BQ5T319 152 aa16.57■□□□□ 0.24
GABPB1-208ENST00000558970 TNS2Q63HR2 1409 aa16.56■□□□□ 0.24
GABPB1-208ENST00000558970 KDRP35968 1356 aa16.56■□□□□ 0.24
GABPB1-208ENST00000558970 SENP3-EIF4A1A0A087X0R7 540 aa16.56■□□□□ 0.24
GABPB1-208ENST00000558970 PRKAR2BP31323 418 aa16.56■□□□□ 0.24
GABPB1-208ENST00000558970 CCDC146Q8IYE0 955 aa16.56■□□□□ 0.24
GABPB1-208ENST00000558970 FAM9BQ8IZU0 186 aa16.56■□□□□ 0.24
GABPB1-208ENST00000558970 DDX54Q8TDD1 881 aaKnown RBP16.55■□□□□ 0.24
GABPB1-208ENST00000558970 RSPH6AQ9H0K4 717 aa16.55■□□□□ 0.24
GABPB1-208ENST00000558970 ADAMTS8Q9UP79 889 aa16.55■□□□□ 0.24
GABPB1-208ENST00000558970 DOT1LQ8TEK3 1739 aa16.54■□□□□ 0.24
GABPB1-208ENST00000558970 KAT6BQ8WYB5 2073 aa16.54■□□□□ 0.24
GABPB1-208ENST00000558970 EXOC5O00471 708 aa16.54■□□□□ 0.24
GABPB1-208ENST00000558970 CDCA7Q9BWT1 371 aaPredicted RBP16.54■□□□□ 0.24
GABPB1-208ENST00000558970 PDE3BQ13370 1112 aa16.53■□□□□ 0.24
GABPB1-208ENST00000558970 ZCRB1Q8TBF4 217 aaKnown RBP16.53■□□□□ 0.24
GABPB1-208ENST00000558970 EP400Q96L91 3159 aa16.52■□□□□ 0.24
GABPB1-208ENST00000558970 ONECUT3O60422 494 aaPredicted RBP16.52■□□□□ 0.24
GABPB1-208ENST00000558970 KRT27Q7Z3Y8 459 aa16.52■□□□□ 0.24
GABPB1-208ENST00000558970 SBF2Q86WG5 1849 aa16.52■□□□□ 0.23
GABPB1-208ENST00000558970 TOGARAM1Q9Y4F4 1720 aa16.51■□□□□ 0.23
GABPB1-208ENST00000558970 CCER2I3L3R5 266 aa16.51■□□□□ 0.23
GABPB1-208ENST00000558970 ZNF530Q6P9A1 599 aaPredicted RBP16.51■□□□□ 0.23
GABPB1-208ENST00000558970 PNISRQ8TF01 805 aaKnown RBP16.51■□□□□ 0.23
GABPB1-208ENST00000558970 PHACTR3Q96KR7 559 aa16.51■□□□□ 0.23
GABPB1-208ENST00000558970 SPG7Q9UQ90 795 aa16.51■□□□□ 0.23
GABPB1-208ENST00000558970 MAPK8IP3Q9UPT6 1336 aa16.5■□□□□ 0.23
GABPB1-208ENST00000558970 FCHSD2O94868 740 aa16.5■□□□□ 0.23
GABPB1-208ENST00000558970 PLEKHO1Q53GL0 409 aaPredicted RBP16.5■□□□□ 0.23
GABPB1-208ENST00000558970 PCDH11XQ9BZA7 1347 aa16.49■□□□□ 0.23
GABPB1-208ENST00000558970 PCDH11YQ9BZA8 1340 aa16.49■□□□□ 0.23
GABPB1-208ENST00000558970 SCN11AQ9UI33 1791 aa16.49■□□□□ 0.23
GABPB1-208ENST00000558970 NEFMP07197 916 aa16.49■□□□□ 0.23
GABPB1-208ENST00000558970 MTHFSDQ2M296 383 aaKnown RBP16.49■□□□□ 0.23
GABPB1-208ENST00000558970 MARCH10Q8NA82 808 aaPredicted RBP16.49■□□□□ 0.23
GABPB1-208ENST00000558970 ITGB4P16144 1822 aa16.49■□□□□ 0.23
GABPB1-208ENST00000558970 CYP27B1O15528 508 aa16.48■□□□□ 0.23
GABPB1-208ENST00000558970 NEUROD2Q15784 382 aa16.47■□□□□ 0.23
GABPB1-208ENST00000558970 PLEKHF1Q96S99 279 aa16.47■□□□□ 0.23
GABPB1-208ENST00000558970 RRP7AQ9Y3A4 280 aaKnown RBP16.47■□□□□ 0.23
GABPB1-208ENST00000558970 AMOTQ4VCS5 1084 aa16.46■□□□□ 0.23
GABPB1-208ENST00000558970 C1orf141Q5JVX7 400 aa16.46■□□□□ 0.23
GABPB1-208ENST00000558970 ACSBG1Q96GR2 724 aa16.46■□□□□ 0.23
GABPB1-208ENST00000558970 PNNQ9H307 717 aaKnown RBP16.46■□□□□ 0.23
GABPB1-208ENST00000558970 PHKG2P15735 406 aa16.45■□□□□ 0.22
GABPB1-208ENST00000558970 IFNL2Q8IZJ0 200 aa16.45■□□□□ 0.22
GABPB1-208ENST00000558970 RUNDC1Q96C34 613 aa16.45■□□□□ 0.22
GABPB1-208ENST00000558970 NHSQ6T4R5 1651 aa16.44■□□□□ 0.22
GABPB1-208ENST00000558970 MPRIPQ6WCQ1 1025 aa16.44■□□□□ 0.22
GABPB1-208ENST00000558970 SYTL4Q96C24 671 aaPredicted RBP16.44■□□□□ 0.22
GABPB1-208ENST00000558970 BTAF1O14981 1849 aa16.43■□□□□ 0.22
GABPB1-208ENST00000558970 GAS2L2Q8NHY3 880 aa16.43■□□□□ 0.22
GABPB1-208ENST00000558970 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.43■□□□□ 0.22
GABPB1-208ENST00000558970 SALL2Q9Y467 1007 aaPredicted RBP16.43■□□□□ 0.22
GABPB1-208ENST00000558970 TNS1Q9HBL0 1735 aaKnown RBP16.42■□□□□ 0.22
GABPB1-208ENST00000558970 MAP3K5Q99683 1374 aa16.42■□□□□ 0.22
GABPB1-208ENST00000558970 APAF1O14727 1248 aa16.42■□□□□ 0.22
GABPB1-208ENST00000558970 KDM6AO15550 1401 aaPredicted RBP16.42■□□□□ 0.22
GABPB1-208ENST00000558970 DCTN1Q14203 1278 aa16.41■□□□□ 0.22
GABPB1-208ENST00000558970 NFE2L2Q16236 605 aa16.41■□□□□ 0.22
GABPB1-208ENST00000558970 AKAP4Q5JQC9 854 aa16.41■□□□□ 0.22
GABPB1-208ENST00000558970 PLEKHG2Q9H7P9 1386 aa16.4■□□□□ 0.22
GABPB1-208ENST00000558970 GNAT3A8MTJ3 354 aa16.4■□□□□ 0.22
GABPB1-208ENST00000558970 RIPK4P57078 832 aa16.4■□□□□ 0.22
GABPB1-208ENST00000558970 FAM196AQ6ZSG2 479 aa16.4■□□□□ 0.22
GABPB1-208ENST00000558970 LGR6Q9HBX8 967 aa16.4■□□□□ 0.22
GABPB1-208ENST00000558970 SIPA1L3O60292 1781 aaPredicted RBP16.4■□□□□ 0.22
GABPB1-208ENST00000558970 ADAMTS7Q9UKP4 1686 aa16.4■□□□□ 0.22
GABPB1-208ENST00000558970 KCNQ2O43526 872 aa16.39■□□□□ 0.21
GABPB1-208ENST00000558970 TRIM37O94972 964 aa16.39■□□□□ 0.21
GABPB1-208ENST00000558970 TMPOP42166 694 aaKnown RBP16.39■□□□□ 0.21
GABPB1-208ENST00000558970 SF3B2Q13435 895 aaKnown RBP16.39■□□□□ 0.21
GABPB1-208ENST00000558970 MCM10Q7L590 875 aa16.39■□□□□ 0.21
GABPB1-208ENST00000558970 PTF1AQ7RTS3 328 aa16.39■□□□□ 0.21
GABPB1-208ENST00000558970 RTF1Q92541 710 aaKnown RBP16.38■□□□□ 0.21
GABPB1-208ENST00000558970 THUMPD2Q9BTF0 503 aaKnown RBP16.38■□□□□ 0.21
GABPB1-208ENST00000558970 HSP90AB1P08238 724 aaKnown RBP16.37■□□□□ 0.21
GABPB1-208ENST00000558970 PRIM1P49642 420 aaKnown RBP16.37■□□□□ 0.21
GABPB1-208ENST00000558970 DCAF5Q96JK2 942 aa16.37■□□□□ 0.21
GABPB1-208ENST00000558970 RNMTO43148 476 aaKnown RBP16.36■□□□□ 0.21
GABPB1-208ENST00000558970 NKX1-1Q15270 411 aaPredicted RBP16.36■□□□□ 0.21
GABPB1-208ENST00000558970 DEFB132Q7Z7B7 95 aa16.36■□□□□ 0.21
GABPB1-208ENST00000558970 CABP4P57796 275 aa16.35■□□□□ 0.21
GABPB1-208ENST00000558970 IL17REQ8NFR9 667 aa16.35■□□□□ 0.21
GABPB1-208ENST00000558970 TMOD3Q9NYL9 352 aa16.34■□□□□ 0.21
GABPB1-208ENST00000558970 TEFQ10587 303 aa16.33■□□□□ 0.2
GABPB1-208ENST00000558970 NFATC2IPQ8NCF5 419 aa16.33■□□□□ 0.2
GABPB1-208ENST00000558970 BCL9O00512 1426 aa16.33■□□□□ 0.2
GABPB1-208ENST00000558970 MRC1P22897 1456 aa16.33■□□□□ 0.2
GABPB1-208ENST00000558970 PAPPAQ13219 1627 aa16.33■□□□□ 0.2
GABPB1-208ENST00000558970 TRIM35Q9UPQ4 493 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms