RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ERCC6L2Q5T890 1561 aa13.74□□□□□ -0.21
LDLR-208ENST00000558518 VPS37CA5D8V6 355 aaPredicted RBP13.74□□□□□ -0.21
LDLR-208ENST00000558518 CEP85Q6P2H3 762 aa13.74□□□□□ -0.21
LDLR-208ENST00000558518 GIMAP6Q6P9H5 292 aa13.74□□□□□ -0.21
LDLR-208ENST00000558518 TRPM2O94759 1503 aa13.74□□□□□ -0.21
LDLR-208ENST00000558518 PPP4R3BQ5MIZ7 849 aa13.73□□□□□ -0.21
LDLR-208ENST00000558518 PLXNC1O60486 1568 aa13.73□□□□□ -0.21
LDLR-208ENST00000558518 ZNF592Q92610 1267 aa13.73□□□□□ -0.21
LDLR-208ENST00000558518 IL16Q14005 1332 aa13.73□□□□□ -0.21
LDLR-208ENST00000558518 MBD3O95983 291 aa13.73□□□□□ -0.21
LDLR-208ENST00000558518 NPM1P06748 294 aaKnown RBP eCLIP13.73□□□□□ -0.21
LDLR-208ENST00000558518 MAPK8IP2Q13387 824 aaPredicted RBP13.73□□□□□ -0.21
LDLR-208ENST00000558518 FKBP5Q13451 457 aaPredicted RBP13.73□□□□□ -0.21
LDLR-208ENST00000558518 G2E3Q7L622 706 aa13.73□□□□□ -0.21
LDLR-208ENST00000558518 HMMRO75330 724 aa13.72□□□□□ -0.21
LDLR-208ENST00000558518 CAMK4Q16566 473 aa13.72□□□□□ -0.21
LDLR-208ENST00000558518 ABCA6Q8N139 1617 aa13.72□□□□□ -0.21
LDLR-208ENST00000558518 FERMT3Q86UX7 667 aa13.72□□□□□ -0.21
LDLR-208ENST00000558518 FBXW7Q969H0 707 aa13.71□□□□□ -0.21
LDLR-208ENST00000558518 MAP7D2Q96T17 732 aa13.71□□□□□ -0.21
LDLR-208ENST00000558518 IFT57Q9NWB7 429 aa13.71□□□□□ -0.21
LDLR-208ENST00000558518 DYNC1I1O14576 645 aa13.71□□□□□ -0.21
LDLR-208ENST00000558518 ZNF500O60304 480 aaPredicted RBP13.71□□□□□ -0.21
LDLR-208ENST00000558518 PDE1AP54750 535 aa13.71□□□□□ -0.21
LDLR-208ENST00000558518 OS9Q13438 667 aaPredicted RBP13.71□□□□□ -0.21
LDLR-208ENST00000558518 FBXO31Q5XUX0 539 aaPredicted RBP13.71□□□□□ -0.21
LDLR-208ENST00000558518 ANKRD44Q8N8A2 993 aa13.71□□□□□ -0.21
LDLR-208ENST00000558518 COG3Q96JB2 828 aa13.71□□□□□ -0.21
LDLR-208ENST00000558518 NOLC1Q14978 699 aaKnown RBP eCLIP13.71□□□□□ -0.229e-6■□□□□ 9.6
LDLR-208ENST00000558518 LTV1Q96GA3 475 aaPredicted RBP13.71□□□□□ -0.22
LDLR-208ENST00000558518 CFAP44Q96MT7 982 aa13.71□□□□□ -0.22
LDLR-208ENST00000558518 MSH6P52701 1360 aa13.7□□□□□ -0.22
LDLR-208ENST00000558518 FOXO3O43524 673 aa13.7□□□□□ -0.22
LDLR-208ENST00000558518 KCNJ4P48050 445 aa13.7□□□□□ -0.22
LDLR-208ENST00000558518 CHAF1AQ13111 956 aaPredicted RBP13.7□□□□□ -0.22
LDLR-208ENST00000558518 FANCAO15360 1455 aa13.7□□□□□ -0.22
LDLR-208ENST00000558518 NPHP1O15259 732 aa13.7□□□□□ -0.22
LDLR-208ENST00000558518 FOSBP53539 338 aa13.7□□□□□ -0.22
LDLR-208ENST00000558518 ADGRL1O94910 1474 aa13.69□□□□□ -0.22
LDLR-208ENST00000558518 RTF1Q92541 710 aaKnown RBP13.69□□□□□ -0.22
LDLR-208ENST00000558518 TSPYL4Q9UJ04 414 aa13.69□□□□□ -0.22
LDLR-208ENST00000558518 SHPRHQ149N8 1683 aa13.69□□□□□ -0.22
LDLR-208ENST00000558518 TXNDC2Q86VQ3 553 aa13.69□□□□□ -0.22
LDLR-208ENST00000558518 SPG7Q9UQ90 795 aa13.69□□□□□ -0.22
LDLR-208ENST00000558518 SPHKAPQ2M3C7 1700 aa13.69□□□□□ -0.22
LDLR-208ENST00000558518 ABCC4O15439 1325 aa13.69□□□□□ -0.22
LDLR-208ENST00000558518 UNC5CLQ8IV45 518 aa13.69□□□□□ -0.22
LDLR-208ENST00000558518 PDLIM2Q96JY6 352 aa13.69□□□□□ -0.22
LDLR-208ENST00000558518 PHF14O94880 888 aa13.68□□□□□ -0.22
LDLR-208ENST00000558518 CYP2E1P05181 493 aaPredicted RBP13.68□□□□□ -0.22
LDLR-208ENST00000558518 LMOD3Q0VAK6 560 aa13.68□□□□□ -0.22
LDLR-208ENST00000558518 FAM173BQ6P4H8 233 aa13.68□□□□□ -0.22
LDLR-208ENST00000558518 CWC27Q6UX04 472 aaKnown RBP13.68□□□□□ -0.22
LDLR-208ENST00000558518 RPAP2Q8IXW5 612 aaPredicted RBP13.68□□□□□ -0.22
LDLR-208ENST00000558518 EIF2S2P20042 333 aaKnown RBP13.68□□□□□ -0.22
LDLR-208ENST00000558518 ARHGAP45Q92619 1136 aa13.68□□□□□ -0.22
LDLR-208ENST00000558518 KIF3AQ9Y496 699 aa13.68□□□□□ -0.22
LDLR-208ENST00000558518 STK31Q9BXU1 1019 aa13.67□□□□□ -0.22
LDLR-208ENST00000558518 MAP3K4Q9Y6R4 1608 aa13.67□□□□□ -0.22
LDLR-208ENST00000558518 MX1P20591 662 aa13.67□□□□□ -0.22
LDLR-208ENST00000558518 C14orf37Q86TY3 774 aa13.67□□□□□ -0.22
LDLR-208ENST00000558518 CCDC83Q8IWF9 413 aa13.67□□□□□ -0.22
LDLR-208ENST00000558518 TCEANC2Q96MN5 208 aa13.67□□□□□ -0.22
LDLR-208ENST00000558518 SMC3Q9UQE7 1217 aa13.67□□□□□ -0.22
LDLR-208ENST00000558518 CKAP2LQ8IYA6 745 aa13.66□□□□□ -0.22
LDLR-208ENST00000558518 ESYT1Q9BSJ8 1104 aa13.66□□□□□ -0.22
LDLR-208ENST00000558518 LRRCC1Q9C099 1032 aa13.66□□□□□ -0.22
LDLR-208ENST00000558518 SRCIN1Q9C0H9 1055 aa13.66□□□□□ -0.22
LDLR-208ENST00000558518 GOLGA6L4A6NEF3 574 aa13.66□□□□□ -0.22
LDLR-208ENST00000558518 U2AF2P26368 475 aaKnown RBP eCLIP13.66□□□□□ -0.223e-6■■■□□ 15.4
LDLR-208ENST00000558518 NUTM2GQ5VZR2 741 aa13.66□□□□□ -0.22
LDLR-208ENST00000558518 PPFIA3O75145 1194 aa13.66□□□□□ -0.22
LDLR-208ENST00000558518 SURF6O75683 361 aaKnown RBP13.66□□□□□ -0.22
LDLR-208ENST00000558518 C16orf45Q96MC5 204 aaPredicted RBP13.66□□□□□ -0.22
LDLR-208ENST00000558518 PNMA6EA0A0J9YXQ4 647 aa13.65□□□□□ -0.22
LDLR-208ENST00000558518 HS1BP3Q53T59 392 aa13.65□□□□□ -0.22
LDLR-208ENST00000558518 ZNF771Q7L3S4 317 aaPredicted RBP13.65□□□□□ -0.22
LDLR-208ENST00000558518 PRDM4Q9UKN5 801 aa13.65□□□□□ -0.22
LDLR-208ENST00000558518 CCDC9Q9Y3X0 531 aaKnown RBP13.65□□□□□ -0.22
LDLR-208ENST00000558518 NSD2O96028 1365 aa13.65□□□□□ -0.22
LDLR-208ENST00000558518 PDCL2Q8N4E4 241 aa13.65□□□□□ -0.22
LDLR-208ENST00000558518 BRD1O95696 1058 aa13.64□□□□□ -0.23
LDLR-208ENST00000558518 GNAI2P04899 355 aa13.64□□□□□ -0.23
LDLR-208ENST00000558518 DNM1Q05193 864 aaKnown RBP13.64□□□□□ -0.23
LDLR-208ENST00000558518 NECAB1Q8N987 351 aa13.64□□□□□ -0.23
LDLR-208ENST00000558518 CCDC94Q9BW85 323 aaPredicted RBP13.64□□□□□ -0.23
LDLR-208ENST00000558518 LRRFIP2Q9Y608 721 aaKnown RBP13.64□□□□□ -0.23
LDLR-208ENST00000558518 SBNO2Q9Y2G9 1366 aa13.64□□□□□ -0.23
LDLR-208ENST00000558518 CEBPZQ03701 1054 aaKnown RBP13.64□□□□□ -0.23
LDLR-208ENST00000558518 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.64□□□□□ -0.23
LDLR-208ENST00000558518 V9GYY5 206 aaPredicted RBP13.64□□□□□ -0.23
LDLR-208ENST00000558518 STK3Q13188 491 aa13.64□□□□□ -0.23
LDLR-208ENST00000558518 HSP90AB2PQ58FF8 381 aa13.64□□□□□ -0.23
LDLR-208ENST00000558518 NAP1L2Q9ULW6 460 aaPredicted RBP13.64□□□□□ -0.23
LDLR-208ENST00000558518 WDR33Q9C0J8 1336 aaKnown RBP13.64□□□□□ -0.23
LDLR-208ENST00000558518 ATP2B3Q16720 1220 aa13.63□□□□□ -0.23
LDLR-208ENST00000558518 IL25Q9H293 177 aa13.63□□□□□ -0.23
LDLR-208ENST00000558518 IL13P35225 146 aa13.63□□□□□ -0.23
LDLR-208ENST00000558518 TFIP11Q9UBB9 837 aaKnown RBP13.63□□□□□ -0.23
LDLR-208ENST00000558518 PYCARDQ9ULZ3 195 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms