RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 NUTM2GQ5VZR2 741 aa13.54□□□□□ -0.24
USP3-206ENST00000558157 POLKQ9UBT6 870 aa13.54□□□□□ -0.24
USP3-206ENST00000558157 EMILIN1Q9Y6C2 1016 aa13.54□□□□□ -0.24
USP3-206ENST00000558157 CDK12Q9NYV4 1490 aaPredicted RBP13.54□□□□□ -0.24
USP3-206ENST00000558157 MCM5P33992 734 aa13.54□□□□□ -0.24
USP3-206ENST00000558157 SMC5Q8IY18 1101 aa13.54□□□□□ -0.24
USP3-206ENST00000558157 PEAK1Q9H792 1746 aa13.54□□□□□ -0.24
USP3-206ENST00000558157 A0A0U1RQG5 324 aaPredicted RBP13.53□□□□□ -0.24
USP3-206ENST00000558157 BCAR3O75815 825 aa13.53□□□□□ -0.24
USP3-206ENST00000558157 RRS1Q15050 365 aaKnown RBP13.53□□□□□ -0.24
USP3-206ENST00000558157 ABTB2Q8N961 1025 aa13.53□□□□□ -0.24
USP3-206ENST00000558157 ALS2Q96Q42 1657 aa13.53□□□□□ -0.24
USP3-206ENST00000558157 NLRP6P59044 892 aa13.53□□□□□ -0.24
USP3-206ENST00000558157 DDX17Q92841 729 aaKnown RBP13.53□□□□□ -0.24
USP3-206ENST00000558157 FAM13BQ9NYF5 915 aa13.53□□□□□ -0.24
USP3-206ENST00000558157 PNPLA6Q8IY17 1366 aa13.52□□□□□ -0.24
USP3-206ENST00000558157 SOX12O15370 315 aa13.52□□□□□ -0.24
USP3-206ENST00000558157 RAB3GAP1Q15042 981 aa13.52□□□□□ -0.24
USP3-206ENST00000558157 AEBP2Q6ZN18 517 aaPredicted RBP13.52□□□□□ -0.24
USP3-206ENST00000558157 KRT28Q7Z3Y7 464 aa13.52□□□□□ -0.24
USP3-206ENST00000558157 RWDD1Q9H446 243 aaPredicted RBP13.52□□□□□ -0.24
USP3-206ENST00000558157 NOL7Q9UMY1 257 aaKnown RBP13.52□□□□□ -0.24
USP3-206ENST00000558157 DMTNQ08495 405 aa13.52□□□□□ -0.25
USP3-206ENST00000558157 BRINP3Q76B58 766 aa13.52□□□□□ -0.25
USP3-206ENST00000558157 PXDNQ92626 1479 aa13.52□□□□□ -0.25
USP3-206ENST00000558157 CLEC17AQ6ZS10 378 aa13.51□□□□□ -0.25
USP3-206ENST00000558157 TNPO1Q92973 898 aaKnown RBP13.51□□□□□ -0.25
USP3-206ENST00000558157 SLAIN2Q9P270 581 aa13.51□□□□□ -0.25
USP3-206ENST00000558157 PDZRN3Q9UPQ7 1066 aa13.51□□□□□ -0.25
USP3-206ENST00000558157 NPHP3Q7Z494 1330 aa13.5□□□□□ -0.25
USP3-206ENST00000558157 GOLGA6L22H0YM25 854 aa13.5□□□□□ -0.25
USP3-206ENST00000558157 CANXP27824 592 aaKnown RBP13.5□□□□□ -0.25
USP3-206ENST00000558157 SPRYD3Q8NCJ5 442 aa13.5□□□□□ -0.25
USP3-206ENST00000558157 UQCRHLA0A096LP55 91 aa13.5□□□□□ -0.25
USP3-206ENST00000558157 UQCRHP07919 91 aa13.5□□□□□ -0.25
USP3-206ENST00000558157 NFAT5O94916 1531 aa13.5□□□□□ -0.25
USP3-206ENST00000558157 R3HCC1Q9Y3T6 440 aaKnown RBP13.49□□□□□ -0.25
USP3-206ENST00000558157 SLIT3O75094 1523 aa13.49□□□□□ -0.25
USP3-206ENST00000558157 LTN1O94822 1766 aa13.49□□□□□ -0.25
USP3-206ENST00000558157 NHSL1Q5SYE7 1610 aa13.49□□□□□ -0.25
USP3-206ENST00000558157 RBM25P49756 843 aaKnown RBP13.49□□□□□ -0.25
USP3-206ENST00000558157 KLHL40Q2TBA0 621 aa13.49□□□□□ -0.25
USP3-206ENST00000558157 CCDC146Q8IYE0 955 aa13.49□□□□□ -0.25
USP3-206ENST00000558157 CCDC94Q9BW85 323 aaPredicted RBP13.49□□□□□ -0.25
USP3-206ENST00000558157 COG6Q9Y2V7 657 aa13.49□□□□□ -0.25
USP3-206ENST00000558157 DIAPH1O60610 1272 aaKnown RBP13.48□□□□□ -0.25
USP3-206ENST00000558157 MAP3K19Q56UN5 1328 aa13.48□□□□□ -0.25
USP3-206ENST00000558157 TNS3Q68CZ2 1445 aa13.48□□□□□ -0.25
USP3-206ENST00000558157 KIF20AO95235 890 aa13.48□□□□□ -0.25
USP3-206ENST00000558157 ZNF445P59923 1031 aa13.48□□□□□ -0.25
USP3-206ENST00000558157 LMOD2Q6P5Q4 547 aa13.48□□□□□ -0.25
USP3-206ENST00000558157 PDLIM2Q96JY6 352 aa13.48□□□□□ -0.25
USP3-206ENST00000558157 SBNO1A3KN83 1393 aa13.48□□□□□ -0.25
USP3-206ENST00000558157 GTPBP4Q9BZE4 634 aaKnown RBP13.47□□□□□ -0.25
USP3-206ENST00000558157 MED1Q15648 1581 aaPredicted RBP13.47□□□□□ -0.25
USP3-206ENST00000558157 U2SURPO15042 1029 aaKnown RBP13.47□□□□□ -0.25
USP3-206ENST00000558157 SASS6Q6UVJ0 657 aa13.47□□□□□ -0.25
USP3-206ENST00000558157 SPINK5Q9NQ38 1064 aaPredicted RBP13.47□□□□□ -0.25
USP3-206ENST00000558157 PHRF1Q9P1Y6 1649 aaKnown RBP13.47□□□□□ -0.25
USP3-206ENST00000558157 ROBO1Q9Y6N7 1651 aa13.46□□□□□ -0.25
USP3-206ENST00000558157 U2AF1L5P0DN76 240 aaPredicted RBP13.46□□□□□ -0.25
USP3-206ENST00000558157 U2AF1Q01081 240 aaKnown RBP eCLIP13.46□□□□□ -0.258e-9■□□□□ 10.7
USP3-206ENST00000558157 PANK1Q8TE04 598 aa13.46□□□□□ -0.25
USP3-206ENST00000558157 CRYBG1Q9Y4K1 1723 aa13.46□□□□□ -0.26
USP3-206ENST00000558157 PCDHB15Q9Y5E8 787 aa13.45□□□□□ -0.26
USP3-206ENST00000558157 FLT4P35916 1363 aa13.45□□□□□ -0.26
USP3-206ENST00000558157 IQSEC2Q5JU85 1478 aa13.45□□□□□ -0.26
USP3-206ENST00000558157 MFAP1P55081 439 aaKnown RBP13.44□□□□□ -0.26
USP3-206ENST00000558157 PDE4CQ08493 712 aa13.44□□□□□ -0.26
USP3-206ENST00000558157 ZKSCAN5Q9Y2L8 839 aa13.44□□□□□ -0.26
USP3-206ENST00000558157 IL13P35225 146 aa13.44□□□□□ -0.26
USP3-206ENST00000558157 SPATA31A3Q5VYP0 1347 aa13.44□□□□□ -0.26
USP3-206ENST00000558157 RGPD1P0DJD0 1748 aa13.43□□□□□ -0.26
USP3-206ENST00000558157 APAF1O14727 1248 aa13.43□□□□□ -0.26
USP3-206ENST00000558157 HSP90AB2PQ58FF8 381 aa13.43□□□□□ -0.26
USP3-206ENST00000558157 HSP90AB1P08238 724 aaKnown RBP13.43□□□□□ -0.26
USP3-206ENST00000558157 ZSCAN20P17040 1043 aaPredicted RBP13.43□□□□□ -0.26
USP3-206ENST00000558157 AMPHP49418 695 aa13.43□□□□□ -0.26
USP3-206ENST00000558157 EIF4A2Q14240 407 aaKnown RBP13.43□□□□□ -0.26
USP3-206ENST00000558157 KCNH5Q8NCM2 988 aa13.43□□□□□ -0.26
USP3-206ENST00000558157 SOS2Q07890 1332 aaPredicted RBP13.43□□□□□ -0.26
USP3-206ENST00000558157 RTL1A6NKG5 1358 aa13.43□□□□□ -0.26
USP3-206ENST00000558157 LETM1O95202 739 aaPredicted RBP13.42□□□□□ -0.26
USP3-206ENST00000558157 RUNDC1Q96C34 613 aa13.42□□□□□ -0.26
USP3-206ENST00000558157 ARHGEF10O15013 1369 aa13.42□□□□□ -0.26
USP3-206ENST00000558157 KIF24Q5T7B8 1368 aa13.42□□□□□ -0.26
USP3-206ENST00000558157 GCP02774 474 aa13.41□□□□□ -0.26
USP3-206ENST00000558157 HOXC9P31274 260 aa13.41□□□□□ -0.26
USP3-206ENST00000558157 RARSP54136 660 aaKnown RBP13.41□□□□□ -0.26
USP3-206ENST00000558157 TAF3Q5VWG9 929 aa13.41□□□□□ -0.26
USP3-206ENST00000558157 ABCA3Q99758 1704 aa13.41□□□□□ -0.26
USP3-206ENST00000558157 ZBTB7CA1YPR0 619 aa13.41□□□□□ -0.26
USP3-206ENST00000558157 AHDC1Q5TGY3 1603 aaPredicted RBP13.41□□□□□ -0.26
USP3-206ENST00000558157 CCDC39Q9UFE4 941 aa13.41□□□□□ -0.26
USP3-206ENST00000558157 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.4□□□□□ -0.26
USP3-206ENST00000558157 DDX49Q9Y6V7 483 aaKnown RBP13.4□□□□□ -0.26
USP3-206ENST00000558157 HMOX1P09601 288 aa13.4□□□□□ -0.26
USP3-206ENST00000558157 HDAC1Q13547 482 aaPredicted RBP13.4□□□□□ -0.26
USP3-206ENST00000558157 PLEKHF1Q96S99 279 aa13.39□□□□□ -0.27
USP3-206ENST00000558157 ZHX1Q9UKY1 873 aaPredicted RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms