RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 ZCRB1Q8TBF4 217 aaKnown RBP19.28■□□□□ 0.68
USP3-205ENST00000557884 HMOX1P09601 288 aa19.27■□□□□ 0.68
USP3-205ENST00000557884 FAM196AQ6ZSG2 479 aa19.27■□□□□ 0.68
USP3-205ENST00000557884 PRKRIP1Q9H875 184 aaPredicted RBP19.27■□□□□ 0.68
USP3-205ENST00000557884 MYBBP1AQ9BQG0 1328 aaKnown RBP19.25■□□□□ 0.67
USP3-205ENST00000557884 TRIM37O94972 964 aa19.24■□□□□ 0.67
USP3-205ENST00000557884 KDRP35968 1356 aa19.22■□□□□ 0.67
USP3-205ENST00000557884 SPG7Q9UQ90 795 aa19.22■□□□□ 0.67
USP3-205ENST00000557884 NUDCQ9Y266 331 aa19.22■□□□□ 0.67
USP3-205ENST00000557884 RGPD1P0DJD0 1748 aa19.21■□□□□ 0.67
USP3-205ENST00000557884 ACSBG1Q96GR2 724 aa19.21■□□□□ 0.67
USP3-205ENST00000557884 PCDH11XQ9BZA7 1347 aa19.21■□□□□ 0.67
USP3-205ENST00000557884 PCDH11YQ9BZA8 1340 aa19.21■□□□□ 0.67
USP3-205ENST00000557884 CYP27B1O15528 508 aa19.2■□□□□ 0.66
USP3-205ENST00000557884 U2AF1L5P0DN76 240 aaPredicted RBP19.2■□□□□ 0.66
USP3-205ENST00000557884 U2AF1Q01081 240 aaKnown RBP eCLIP19.2■□□□□ 0.668e-9■□□□□ 10.7
USP3-205ENST00000557884 SF3B2Q13435 895 aaKnown RBP19.2■□□□□ 0.66
USP3-205ENST00000557884 ANP32CO43423 234 aa19.19■□□□□ 0.66
USP3-205ENST00000557884 PLEKHO1Q53GL0 409 aaPredicted RBP19.19■□□□□ 0.66
USP3-205ENST00000557884 PTF1AQ7RTS3 328 aa19.19■□□□□ 0.66
USP3-205ENST00000557884 CCDC125Q86Z20 511 aa19.18■□□□□ 0.66
USP3-205ENST00000557884 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.18■□□□□ 0.661e-7■□□□□ 10.5
USP3-205ENST00000557884 BCL9O00512 1426 aa19.17■□□□□ 0.66
USP3-205ENST00000557884 KCNQ2O43526 872 aa19.17■□□□□ 0.66
USP3-205ENST00000557884 ZNF530Q6P9A1 599 aaPredicted RBP19.17■□□□□ 0.66
USP3-205ENST00000557884 DEFB132Q7Z7B7 95 aa19.17■□□□□ 0.66
USP3-205ENST00000557884 AMOTQ4VCS5 1084 aa19.16■□□□□ 0.66
USP3-205ENST00000557884 APBA3O96018 575 aa19.15■□□□□ 0.66
USP3-205ENST00000557884 PHKG2P15735 406 aa19.15■□□□□ 0.66
USP3-205ENST00000557884 SYTL4Q96C24 671 aaPredicted RBP19.15■□□□□ 0.66
USP3-205ENST00000557884 BCL11BQ9C0K0 894 aaPredicted RBP19.15■□□□□ 0.66
USP3-205ENST00000557884 RSPH6AQ9H0K4 717 aa19.15■□□□□ 0.66
USP3-205ENST00000557884 SHANK3Q9BYB0 1731 aa19.14■□□□□ 0.66
USP3-205ENST00000557884 PRKAR2BP31323 418 aa19.14■□□□□ 0.65
USP3-205ENST00000557884 IFNL2Q8IZJ0 200 aa19.14■□□□□ 0.65
USP3-205ENST00000557884 PLEKHG2Q9H7P9 1386 aa19.14■□□□□ 0.65
USP3-205ENST00000557884 PKD1L3Q7Z443 1732 aa19.14■□□□□ 0.65
USP3-205ENST00000557884 BAG6P46379 1132 aa19.13■□□□□ 0.65
USP3-205ENST00000557884 PRIM1P49642 420 aaKnown RBP19.13■□□□□ 0.65
USP3-205ENST00000557884 EN1Q05925 392 aaPredicted RBP19.12■□□□□ 0.65
USP3-205ENST00000557884 MTHFSDQ2M296 383 aaKnown RBP19.12■□□□□ 0.65
USP3-205ENST00000557884 C1orf141Q5JVX7 400 aa19.12■□□□□ 0.65
USP3-205ENST00000557884 FCHSD2O94868 740 aa19.1■□□□□ 0.65
USP3-205ENST00000557884 NKX1-1Q15270 411 aaPredicted RBP19.1■□□□□ 0.65
USP3-205ENST00000557884 CCDC184Q52MB2 194 aa19.1■□□□□ 0.65
USP3-205ENST00000557884 PHACTR3Q96KR7 559 aa19.1■□□□□ 0.65
USP3-205ENST00000557884 TNS1Q9HBL0 1735 aaKnown RBP19.08■□□□□ 0.65
USP3-205ENST00000557884 WDR43Q15061 677 aaKnown RBP eCLIP19.08■□□□□ 0.64
USP3-205ENST00000557884 EZH2Q15910 746 aaKnown RBP19.08■□□□□ 0.64
USP3-205ENST00000557884 MPRIPQ6WCQ1 1025 aa19.08■□□□□ 0.64
USP3-205ENST00000557884 HSP90AB1P08238 724 aaKnown RBP19.07■□□□□ 0.64
USP3-205ENST00000557884 AKAP4Q5JQC9 854 aa19.07■□□□□ 0.64
USP3-205ENST00000557884 NHSQ6T4R5 1651 aa19.06■□□□□ 0.64
USP3-205ENST00000557884 GAS2L2Q8NHY3 880 aa19.06■□□□□ 0.64
USP3-205ENST00000557884 DCAF5Q96JK2 942 aa19.06■□□□□ 0.64
USP3-205ENST00000557884 CAMKK2Q96RR4 588 aa19.06■□□□□ 0.64
USP3-205ENST00000557884 KDM6AO15550 1401 aaPredicted RBP19.06■□□□□ 0.64
USP3-205ENST00000557884 DOT1LQ8TEK3 1739 aa19.05■□□□□ 0.64
USP3-205ENST00000557884 MRS2Q9HD23 443 aa19.05■□□□□ 0.64
USP3-205ENST00000557884 SBF2Q86WG5 1849 aa19.04■□□□□ 0.64
USP3-205ENST00000557884 NEFMP07197 916 aa19.04■□□□□ 0.64
USP3-205ENST00000557884 CCDC146Q8IYE0 955 aa19.04■□□□□ 0.64
USP3-205ENST00000557884 PLEKHF1Q96S99 279 aa19.04■□□□□ 0.64
USP3-205ENST00000557884 TMOD3Q9NYL9 352 aa19.04■□□□□ 0.64
USP3-205ENST00000557884 ADAMTS8Q9UP79 889 aa19.04■□□□□ 0.64
USP3-205ENST00000557884 PIGBQ92521 554 aa19.03■□□□□ 0.64
USP3-205ENST00000557884 LGR6Q9HBX8 967 aa19.03■□□□□ 0.64
USP3-205ENST00000557884 TOGARAM1Q9Y4F4 1720 aa19.03■□□□□ 0.64
USP3-205ENST00000557884 MAPK8IP3Q9UPT6 1336 aa19.02■□□□□ 0.64
USP3-205ENST00000557884 ERVV-2B6SEH9 535 aa19.02■□□□□ 0.64
USP3-205ENST00000557884 PLSCR1O15162 318 aa19.02■□□□□ 0.64
USP3-205ENST00000557884 CABP4P57796 275 aa19.02■□□□□ 0.64
USP3-205ENST00000557884 PNNQ9H307 717 aaKnown RBP19.02■□□□□ 0.64
USP3-205ENST00000557884 MAP3K5Q99683 1374 aa19.02■□□□□ 0.64
USP3-205ENST00000557884 GNAT3A8MTJ3 354 aa19.01■□□□□ 0.63
USP3-205ENST00000557884 RNMTO43148 476 aaKnown RBP19.01■□□□□ 0.63
USP3-205ENST00000557884 DIEXFQ68CQ4 756 aaKnown RBP19.01■□□□□ 0.63
USP3-205ENST00000557884 PROM2Q8N271 834 aa19■□□□□ 0.63
USP3-205ENST00000557884 TXNRD1Q16881 649 aa18.99■□□□□ 0.63
USP3-205ENST00000557884 BTAF1O14981 1849 aa18.98■□□□□ 0.63
USP3-205ENST00000557884 NFE2L2Q16236 605 aa18.98■□□□□ 0.63
USP3-205ENST00000557884 NFATC2IPQ8NCF5 419 aa18.98■□□□□ 0.63
USP3-205ENST00000557884 IL17REQ8NFR9 667 aa18.98■□□□□ 0.63
USP3-205ENST00000557884 ASAP1Q9ULH1 1129 aa18.98■□□□□ 0.63
USP3-205ENST00000557884 KCNQ4P56696 695 aa18.97■□□□□ 0.63
USP3-205ENST00000557884 KAT6BQ8WYB5 2073 aa18.97■□□□□ 0.63
USP3-205ENST00000557884 PALLDQ8WX93 1383 aa18.96■□□□□ 0.63
USP3-205ENST00000557884 DCTN1Q14203 1278 aa18.96■□□□□ 0.63
USP3-205ENST00000557884 MCM10Q7L590 875 aa18.96■□□□□ 0.63
USP3-205ENST00000557884 PNISRQ8TF01 805 aaKnown RBP18.96■□□□□ 0.63
USP3-205ENST00000557884 RTF1Q92541 710 aaKnown RBP18.96■□□□□ 0.63
USP3-205ENST00000557884 RUNDC1Q96C34 613 aa18.96■□□□□ 0.63
USP3-205ENST00000557884 SLC52A2Q9HAB3 445 aa18.96■□□□□ 0.63
USP3-205ENST00000557884 RRP7AQ9Y3A4 280 aaKnown RBP18.96■□□□□ 0.63
USP3-205ENST00000557884 SMARCC1Q92922 1105 aaPredicted RBP18.95■□□□□ 0.62
USP3-205ENST00000557884 ATG3Q9NT62 314 aa18.95■□□□□ 0.62
USP3-205ENST00000557884 TEFQ10587 303 aa18.94■□□□□ 0.62
USP3-205ENST00000557884 LRRC4BQ9NT99 713 aa18.94■□□□□ 0.62
USP3-205ENST00000557884 CCNL1Q9UK58 526 aaPredicted RBP18.94■□□□□ 0.62
USP3-205ENST00000557884 TMPOP42166 694 aaKnown RBP18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms