RNA–Protein interactions for RNA: ENST00000557341.5

SNX6-210, Transcript of sorting nexin 6, humanhuman

TSL 5

Gene SNX6, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-210ENST00000557341 STK32BQ9NY57 414 aa19.68■□□□□ 0.74
SNX6-210ENST00000557341 CARD14Q9BXL6 1004 aa19.67■□□□□ 0.74
SNX6-210ENST00000557341 PPP1R1BQ9UD71 204 aaPredicted RBP19.67■□□□□ 0.74
SNX6-210ENST00000557341 TOGARAM1Q9Y4F4 1720 aa19.66■□□□□ 0.74
SNX6-210ENST00000557341 SLC15A2Q16348 729 aa19.65■□□□□ 0.74
SNX6-210ENST00000557341 CGNL1Q0VF96 1302 aa19.65■□□□□ 0.74
SNX6-210ENST00000557341 NBPF6Q5VWK0 638 aa19.64■□□□□ 0.73
SNX6-210ENST00000557341 ZCRB1Q8TBF4 217 aaKnown RBP19.64■□□□□ 0.73
SNX6-210ENST00000557341 CCER1Q8TC90 406 aaPredicted RBP19.64■□□□□ 0.73
SNX6-210ENST00000557341 NBPF4Q96M43 638 aa19.64■□□□□ 0.73
SNX6-210ENST00000557341 C5P01031 1676 aa19.64■□□□□ 0.73
SNX6-210ENST00000557341 TAF1LQ8IZX4 1826 aa19.64■□□□□ 0.73
SNX6-210ENST00000557341 HSP90AB2PQ58FF8 381 aa19.63■□□□□ 0.73
SNX6-210ENST00000557341 RAPGEF4Q8WZA2 1011 aa19.63■□□□□ 0.73
SNX6-210ENST00000557341 COL24A1Q17RW2 1714 aa19.62■□□□□ 0.73
SNX6-210ENST00000557341 EIF4G2P78344 907 aaKnown RBP eCLIP19.62■□□□□ 0.73
SNX6-210ENST00000557341 USHBP1Q8N6Y0 703 aa19.62■□□□□ 0.73
SNX6-210ENST00000557341 PDGFDQ9GZP0 370 aaPredicted RBP19.62■□□□□ 0.73
SNX6-210ENST00000557341 NCAPD2Q15021 1401 aa19.61■□□□□ 0.73
SNX6-210ENST00000557341 NSD2O96028 1365 aa19.61■□□□□ 0.73
SNX6-210ENST00000557341 SYTL4Q96C24 671 aaPredicted RBP19.61■□□□□ 0.73
SNX6-210ENST00000557341 POLR3GLQ9BT43 218 aa19.61■□□□□ 0.73
SNX6-210ENST00000557341 ZBTB7AO95365 584 aa19.6■□□□□ 0.73
SNX6-210ENST00000557341 EMILIN1Q9Y6C2 1016 aa19.6■□□□□ 0.73
SNX6-210ENST00000557341 PCDH11XQ9BZA7 1347 aa19.59■□□□□ 0.73
SNX6-210ENST00000557341 PCDH11YQ9BZA8 1340 aa19.59■□□□□ 0.73
SNX6-210ENST00000557341 TATP17735 454 aaPredicted RBP19.59■□□□□ 0.73
SNX6-210ENST00000557341 SLC27A3Q5K4L6 730 aa19.59■□□□□ 0.73
SNX6-210ENST00000557341 PRIM1P49642 420 aaKnown RBP19.58■□□□□ 0.72
SNX6-210ENST00000557341 HSPA5P11021 654 aaKnown RBP19.57■□□□□ 0.72
SNX6-210ENST00000557341 LRRC4BQ9NT99 713 aa19.57■□□□□ 0.72
SNX6-210ENST00000557341 PPM1GO15355 546 aaPredicted RBP19.56■□□□□ 0.72
SNX6-210ENST00000557341 ZNF827Q17R98 1081 aa19.56■□□□□ 0.72
SNX6-210ENST00000557341 MTFR1LQ9H019 292 aa19.56■□□□□ 0.72
SNX6-210ENST00000557341 PTGER2P43116 358 aa19.55■□□□□ 0.72
SNX6-210ENST00000557341 ATF5Q9Y2D1 282 aaPredicted RBP19.54■□□□□ 0.72
SNX6-210ENST00000557341 WASHC2AQ641Q2 1341 aa19.53■□□□□ 0.72
SNX6-210ENST00000557341 CHD4Q14839 1912 aa19.53■□□□□ 0.72
SNX6-210ENST00000557341 AKT1S1Q96B36 256 aa19.52■□□□□ 0.72
SNX6-210ENST00000557341 DCAF8L1A6NGE4 600 aa19.51■□□□□ 0.71
SNX6-210ENST00000557341 POLKQ9UBT6 870 aa19.51■□□□□ 0.71
SNX6-210ENST00000557341 C4BP0C0L5 1744 aa19.51■□□□□ 0.71
SNX6-210ENST00000557341 SGIP1Q9BQI5 828 aa19.5■□□□□ 0.71
SNX6-210ENST00000557341 UBR3Q6ZT12 1888 aa19.5■□□□□ 0.71
SNX6-210ENST00000557341 PANK3Q9H999 370 aa19.49■□□□□ 0.71
SNX6-210ENST00000557341 CCNL1Q9UK58 526 aaPredicted RBP19.49■□□□□ 0.71
SNX6-210ENST00000557341 PLEKHG2Q9H7P9 1386 aa19.48■□□□□ 0.71
SNX6-210ENST00000557341 CYP27B1O15528 508 aa19.48■□□□□ 0.71
SNX6-210ENST00000557341 TNNT2P45379 298 aaPredicted RBP19.48■□□□□ 0.71
SNX6-210ENST00000557341 KCNQ4P56696 695 aa19.48■□□□□ 0.71
SNX6-210ENST00000557341 VIRMAQ69YN4 1812 aaKnown RBP19.48■□□□□ 0.71
SNX6-210ENST00000557341 PNPLA7Q6ZV29 1317 aa19.48■□□□□ 0.71
SNX6-210ENST00000557341 SLC16A10Q8TF71 515 aa19.47■□□□□ 0.71
SNX6-210ENST00000557341 EYA1Q99502 592 aa19.47■□□□□ 0.71
SNX6-210ENST00000557341 TFCP2L1Q9NZI6 479 aa19.47■□□□□ 0.71
SNX6-210ENST00000557341 SPG7Q9UQ90 795 aa19.47■□□□□ 0.71
SNX6-210ENST00000557341 UTRNP46939 3433 aa19.47■□□□□ 0.71
SNX6-210ENST00000557341 PALLDQ8WX93 1383 aa19.46■□□□□ 0.71
SNX6-210ENST00000557341 FHDC1Q9C0D6 1143 aaPredicted RBP19.46■□□□□ 0.71
SNX6-210ENST00000557341 MAP3K5Q99683 1374 aa19.45■□□□□ 0.7
SNX6-210ENST00000557341 MPRIPQ6WCQ1 1025 aa19.45■□□□□ 0.7
SNX6-210ENST00000557341 ARXQ96QS3 562 aa19.45■□□□□ 0.7
SNX6-210ENST00000557341 ZNF831Q5JPB2 1677 aa19.44■□□□□ 0.7
SNX6-210ENST00000557341 EIF4A2Q14240 407 aaKnown RBP19.44■□□□□ 0.7
SNX6-210ENST00000557341 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.44■□□□□ 0.73e-9■■■■■ 28.2
SNX6-210ENST00000557341 SYT17Q9BSW7 474 aa19.43■□□□□ 0.7
SNX6-210ENST00000557341 IGSF1Q8N6C5 1336 aa19.43■□□□□ 0.7
SNX6-210ENST00000557341 YY1P25490 414 aa19.42■□□□□ 0.7
SNX6-210ENST00000557341 HMGB2P26583 209 aaKnown RBP19.42■□□□□ 0.7
SNX6-210ENST00000557341 NKX1-1Q15270 411 aaPredicted RBP19.42■□□□□ 0.7
SNX6-210ENST00000557341 POLD1P28340 1107 aa19.41■□□□□ 0.7
SNX6-210ENST00000557341 SMARCC1Q92922 1105 aaPredicted RBP19.41■□□□□ 0.7
SNX6-210ENST00000557341 COL5A3P25940 1745 aaPredicted RBP19.41■□□□□ 0.7
SNX6-210ENST00000557341 SCN11AQ9UI33 1791 aa19.41■□□□□ 0.7
SNX6-210ENST00000557341 GOLGB1Q14789 3259 aaKnown RBP19.41■□□□□ 0.7
SNX6-210ENST00000557341 MORC1Q86VD1 984 aa19.4■□□□□ 0.7
SNX6-210ENST00000557341 IFNL2Q8IZJ0 200 aa19.4■□□□□ 0.7
SNX6-210ENST00000557341 KNSTRNQ9Y448 316 aa19.4■□□□□ 0.7
SNX6-210ENST00000557341 PHKG2P15735 406 aa19.39■□□□□ 0.69
SNX6-210ENST00000557341 KIF7Q2M1P5 1343 aa19.38■□□□□ 0.69
SNX6-210ENST00000557341 PIGBQ92521 554 aa19.38■□□□□ 0.69
SNX6-210ENST00000557341 MSH5O43196 834 aa19.37■□□□□ 0.69
SNX6-210ENST00000557341 TMOD3Q9NYL9 352 aa19.37■□□□□ 0.69
SNX6-210ENST00000557341 COL23A1Q86Y22 540 aaPredicted RBP19.36■□□□□ 0.69
SNX6-210ENST00000557341 KLHL34Q8N239 644 aa19.35■□□□□ 0.69
SNX6-210ENST00000557341 FLAD1Q8NFF5 587 aa19.34■□□□□ 0.69
SNX6-210ENST00000557341 AK7Q96M32 723 aa19.34■□□□□ 0.69
SNX6-210ENST00000557341 CICQ96RK0 1608 aaPredicted RBP19.33■□□□□ 0.69
SNX6-210ENST00000557341 AMER1Q5JTC6 1135 aaPredicted RBP19.33■□□□□ 0.68
SNX6-210ENST00000557341 KDRP35968 1356 aa19.32■□□□□ 0.68
SNX6-210ENST00000557341 C4AP0C0L4 1744 aa19.32■□□□□ 0.68
SNX6-210ENST00000557341 LOC102724428A0A0B4J2F2 783 aa19.32■□□□□ 0.68
SNX6-210ENST00000557341 HSP90AB1P08238 724 aaKnown RBP19.32■□□□□ 0.68
SNX6-210ENST00000557341 SIK1P57059 783 aa19.32■□□□□ 0.68
SNX6-210ENST00000557341 KDM6AO15550 1401 aaPredicted RBP19.32■□□□□ 0.68
SNX6-210ENST00000557341 AMOTQ4VCS5 1084 aa19.31■□□□□ 0.68
SNX6-210ENST00000557341 PLEKHO1Q53GL0 409 aaPredicted RBP19.31■□□□□ 0.68
SNX6-210ENST00000557341 MSL1Q68DK7 614 aa19.3■□□□□ 0.68
SNX6-210ENST00000557341 ZNF530Q6P9A1 599 aaPredicted RBP19.3■□□□□ 0.68
SNX6-210ENST00000557341 ASAP1Q9ULH1 1129 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms