RNA–Protein interactions for RNA: ENST00000556778.5

PRKCH-222, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-222	ENST00000556778	GABBR2	O75899	941 aa		12.04	□□□□□ -0.48
PRKCH-222	ENST00000556778	TCP11L2	Q8N4U5	519 aa		12.04	□□□□□ -0.48
PRKCH-222	ENST00000556778	LMO7	Q8WWI1	1683 aa		12.03	□□□□□ -0.48
PRKCH-222	ENST00000556778	NBPF6	Q5VWK0	638 aa		12.03	□□□□□ -0.48
PRKCH-222	ENST00000556778	USHBP1	Q8N6Y0	703 aa		12.03	□□□□□ -0.48
PRKCH-222	ENST00000556778	NBPF4	Q96M43	638 aa		12.03	□□□□□ -0.48
PRKCH-222	ENST00000556778	ERBB3	P21860	1342 aa		12.03	□□□□□ -0.48
PRKCH-222	ENST00000556778	PLCH1	Q4KWH8	1693 aa		12.03	□□□□□ -0.48
PRKCH-222	ENST00000556778	CARD10	Q9BWT7	1032 aa		12.02	□□□□□ -0.49
PRKCH-222	ENST00000556778	CRB1	P82279	1406 aa		12.02	□□□□□ -0.49
PRKCH-222	ENST00000556778	COL18A1	P39060	1754 aa		12.01	□□□□□ -0.49
PRKCH-222	ENST00000556778	SOCS7	O14512	581 aa		12.01	□□□□□ -0.49
PRKCH-222	ENST00000556778	BARGIN	Q6ZT62	677 aa		12.01	□□□□□ -0.49
PRKCH-222	ENST00000556778	NRAP	Q86VF7	1730 aa		12	□□□□□ -0.49
PRKCH-222	ENST00000556778	ZNF316	A6NFI3	1004 aa	Predicted RBP	12	□□□□□ -0.49
PRKCH-222	ENST00000556778	MTHFS	P49914	203 aa		12	□□□□□ -0.49
PRKCH-222	ENST00000556778	FAM212A	Q96EL1	285 aa		12	□□□□□ -0.49
PRKCH-222	ENST00000556778	EIF4A2	Q14240	407 aa	Known RBP	11.99	□□□□□ -0.49
PRKCH-222	ENST00000556778	KRT27	Q7Z3Y8	459 aa		11.99	□□□□□ -0.49
PRKCH-222	ENST00000556778	SPOCK2	Q92563	424 aa		11.99	□□□□□ -0.49
PRKCH-222	ENST00000556778	NSD2	O96028	1365 aa		11.99	□□□□□ -0.49
PRKCH-222	ENST00000556778	INSR	P06213	1382 aa		11.99	□□□□□ -0.49
PRKCH-222	ENST00000556778	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.99	□□□□□ -0.49
PRKCH-222	ENST00000556778	USP54	Q70EL1	1684 aa		11.99	□□□□□ -0.49
PRKCH-222	ENST00000556778	BLM	P54132	1417 aa	Predicted RBP	11.98	□□□□□ -0.49
PRKCH-222	ENST00000556778	FLT4	P35916	1363 aa		11.98	□□□□□ -0.49
PRKCH-222	ENST00000556778	THRAP3	Q9Y2W1	955 aa	Known RBP	11.98	□□□□□ -0.49
PRKCH-222	ENST00000556778	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.97	□□□□□ -0.49
PRKCH-222	ENST00000556778	EYA1	Q99502	592 aa		11.97	□□□□□ -0.49
PRKCH-222	ENST00000556778	PEAK1	Q9H792	1746 aa		11.97	□□□□□ -0.49
PRKCH-222	ENST00000556778	NWD2	Q9ULI1	1742 aa		11.97	□□□□□ -0.49
PRKCH-222	ENST00000556778	RTL1	A6NKG5	1358 aa		11.96	□□□□□ -0.49
PRKCH-222	ENST00000556778	PPP2R1A	P30153	589 aa		11.96	□□□□□ -0.49
PRKCH-222	ENST00000556778	MARCH10	Q8NA82	808 aa	Predicted RBP	11.96	□□□□□ -0.49
PRKCH-222	ENST00000556778	NPC1L1	Q9UHC9	1359 aa		11.95	□□□□□ -0.5
PRKCH-222	ENST00000556778	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	11.95	□□□□□ -0.5
PRKCH-222	ENST00000556778	IL2RB	P14784	551 aa		11.95	□□□□□ -0.5
PRKCH-222	ENST00000556778	IL13	P35225	146 aa		11.95	□□□□□ -0.5
PRKCH-222	ENST00000556778	CLCN6	P51797	869 aa		11.95	□□□□□ -0.5
PRKCH-222	ENST00000556778	PDE3B	Q13370	1112 aa		11.95	□□□□□ -0.5
PRKCH-222	ENST00000556778	DDB1	Q16531	1140 aa		11.95	□□□□□ -0.5
PRKCH-222	ENST00000556778	PTF1A	Q7RTS3	328 aa		11.95	□□□□□ -0.5
PRKCH-222	ENST00000556778	DISP2	A7MBM2	1401 aa		11.94	□□□□□ -0.5
PRKCH-222	ENST00000556778	KIF24	Q5T7B8	1368 aa		11.94	□□□□□ -0.5
PRKCH-222	ENST00000556778	EXOC5	O00471	708 aa		11.94	□□□□□ -0.5
PRKCH-222	ENST00000556778	GALR2	O43603	387 aa	Predicted RBP	11.94	□□□□□ -0.5
PRKCH-222	ENST00000556778	AEBP1	Q8IUX7	1158 aa		11.94	□□□□□ -0.5
PRKCH-222	ENST00000556778	KIF20B	Q96Q89	1820 aa		11.93	□□□□□ -0.5
PRKCH-222	ENST00000556778	DDX54	Q8TDD1	881 aa	Known RBP	11.93	□□□□□ -0.5
PRKCH-222	ENST00000556778	KIF12	Q96FN5	646 aa		11.93	□□□□□ -0.5
PRKCH-222	ENST00000556778	ABCC6	O95255	1503 aa		11.92	□□□□□ -0.5
PRKCH-222	ENST00000556778	SMG6	Q86US8	1419 aa	Known RBP	11.92	□□□□□ -0.5
PRKCH-222	ENST00000556778	TRIM37	O94972	964 aa		11.91	□□□□□ -0.5
PRKCH-222	ENST00000556778	DCAF8	Q5TAQ9	597 aa		11.91	□□□□□ -0.5
PRKCH-222	ENST00000556778	MS4A3	Q96HJ5	214 aa		11.91	□□□□□ -0.5
PRKCH-222	ENST00000556778	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.91	□□□□□ -0.5
PRKCH-222	ENST00000556778	LTN1	O94822	1766 aa		11.91	□□□□□ -0.5
PRKCH-222	ENST00000556778	MEGF6	O75095	1541 aa		11.91	□□□□□ -0.5
PRKCH-222	ENST00000556778	THSD7A	Q9UPZ6	1657 aa		11.91	□□□□□ -0.5
PRKCH-222	ENST00000556778	RGPD5	Q99666	1765 aa		11.9	□□□□□ -0.5
PRKCH-222	ENST00000556778	KCNQ2	O43526	872 aa		11.9	□□□□□ -0.5
PRKCH-222	ENST00000556778	DIAPH1	O60610	1272 aa	Known RBP	11.9	□□□□□ -0.5
PRKCH-222	ENST00000556778	HMOX1	P09601	288 aa		11.9	□□□□□ -0.5
PRKCH-222	ENST00000556778	SULT6B1	Q6IMI4	303 aa		11.9	□□□□□ -0.5
PRKCH-222	ENST00000556778	DEFB132	Q7Z7B7	95 aa		11.9	□□□□□ -0.5
PRKCH-222	ENST00000556778	ZCRB1	Q8TBF4	217 aa	Known RBP	11.9	□□□□□ -0.5
PRKCH-222	ENST00000556778	RAPGEF4	Q8WZA2	1011 aa		11.9	□□□□□ -0.5
PRKCH-222	ENST00000556778	PARD3	Q8TEW0	1356 aa		11.9	□□□□□ -0.5
PRKCH-222	ENST00000556778	IGSF1	Q8N6C5	1336 aa		11.89	□□□□□ -0.51
PRKCH-222	ENST00000556778	TAT	P17735	454 aa	Predicted RBP	11.89	□□□□□ -0.51
PRKCH-222	ENST00000556778	FAM196A	Q6ZSG2	479 aa		11.89	□□□□□ -0.51
PRKCH-222	ENST00000556778	ACSBG1	Q96GR2	724 aa		11.89	□□□□□ -0.51
PRKCH-222	ENST00000556778	U2SURP	O15042	1029 aa	Known RBP	11.88	□□□□□ -0.51
PRKCH-222	ENST00000556778	CYP27B1	O15528	508 aa		11.88	□□□□□ -0.51
PRKCH-222	ENST00000556778	MAP3K13	O43283	966 aa		11.88	□□□□□ -0.51
PRKCH-222	ENST00000556778	GSE1	Q14687	1217 aa		11.88	□□□□□ -0.51
PRKCH-222	ENST00000556778	RALBP1	Q15311	655 aa		11.86	□□□□□ -0.51
PRKCH-222	ENST00000556778	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.86	□□□□□ -0.51
PRKCH-222	ENST00000556778	COL3A1	P02461	1466 aa	Predicted RBP	11.86	□□□□□ -0.51
PRKCH-222	ENST00000556778	OVOS2	A0A0G2JMS6	1433 aa		11.86	□□□□□ -0.51
PRKCH-222	ENST00000556778	EP400	Q96L91	3159 aa		11.85	□□□□□ -0.51
PRKCH-222	ENST00000556778	APBA3	O96018	575 aa		11.85	□□□□□ -0.51
PRKCH-222	ENST00000556778	EN1	Q05925	392 aa	Predicted RBP	11.85	□□□□□ -0.51
PRKCH-222	ENST00000556778	CCDC184	Q52MB2	194 aa		11.85	□□□□□ -0.51
PRKCH-222	ENST00000556778	ANKRD26	Q9UPS8	1709 aa		11.85	□□□□□ -0.51
PRKCH-222	ENST00000556778	NCAPD2	Q15021	1401 aa		11.85	□□□□□ -0.51
PRKCH-222	ENST00000556778	TNS2	Q63HR2	1409 aa		11.85	□□□□□ -0.51
PRKCH-222	ENST00000556778	FAM208A	Q9UK61	1670 aa	Known RBP	11.84	□□□□□ -0.51
PRKCH-222	ENST00000556778	POTEI	P0CG38	1075 aa		11.84	□□□□□ -0.51
PRKCH-222	ENST00000556778	PYGB	P11216	843 aa		11.84	□□□□□ -0.51
PRKCH-222	ENST00000556778	PRIM1	P49642	420 aa	Known RBP	11.84	□□□□□ -0.51
PRKCH-222	ENST00000556778	PHACTR3	Q96KR7	559 aa		11.84	□□□□□ -0.51
PRKCH-222	ENST00000556778	CFAP53	Q96M91	514 aa		11.84	□□□□□ -0.51
PRKCH-222	ENST00000556778	BRWD3	Q6RI45	1802 aa		11.83	□□□□□ -0.51
PRKCH-222	ENST00000556778	LRRC37A3	O60309	1634 aa		11.83	□□□□□ -0.52
PRKCH-222	ENST00000556778	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.83	□□□□□ -0.52
PRKCH-222	ENST00000556778	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.83	□□□□□ -0.52
PRKCH-222	ENST00000556778	EZH2	Q15910	746 aa	Known RBP	11.83	□□□□□ -0.52
PRKCH-222	ENST00000556778	CCDC125	Q86Z20	511 aa		11.83	□□□□□ -0.52
PRKCH-222	ENST00000556778	SYTL4	Q96C24	671 aa	Predicted RBP	11.83	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 157.9 ms