RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 PLEKHO1Q53GL0 409 aaPredicted RBP13.34□□□□□ -0.27
SRP54-208ENST00000555557 COL14A1Q05707 1796 aaKnown RBP13.34□□□□□ -0.27
SRP54-208ENST00000555557 SOCS7O14512 581 aa13.33□□□□□ -0.28
SRP54-208ENST00000555557 TATP17735 454 aaPredicted RBP13.33□□□□□ -0.28
SRP54-208ENST00000555557 TRMT2AQ8IZ69 625 aaKnown RBP13.33□□□□□ -0.28
SRP54-208ENST00000555557 NGLY1Q96IV0 654 aa13.33□□□□□ -0.28
SRP54-208ENST00000555557 LAS1LQ9Y4W2 734 aaKnown RBP13.33□□□□□ -0.28
SRP54-208ENST00000555557 MEGF6O75095 1541 aa13.33□□□□□ -0.28
SRP54-208ENST00000555557 LMOD3Q0VAK6 560 aa13.33□□□□□ -0.28
SRP54-208ENST00000555557 ZNF530Q6P9A1 599 aaPredicted RBP13.33□□□□□ -0.28
SRP54-208ENST00000555557 LRP6O75581 1613 aa13.32□□□□□ -0.28
SRP54-208ENST00000555557 FAM208AQ9UK61 1670 aaKnown RBP13.32□□□□□ -0.28
SRP54-208ENST00000555557 GNAT3A8MTJ3 354 aa13.32□□□□□ -0.28
SRP54-208ENST00000555557 AMOTQ4VCS5 1084 aa13.32□□□□□ -0.28
SRP54-208ENST00000555557 RTF1Q92541 710 aaKnown RBP13.32□□□□□ -0.28
SRP54-208ENST00000555557 TSR2Q969E8 191 aaKnown RBP13.32□□□□□ -0.28
SRP54-208ENST00000555557 CRB1P82279 1406 aa13.32□□□□□ -0.28
SRP54-208ENST00000555557 IL17REQ8NFR9 667 aa13.31□□□□□ -0.28
SRP54-208ENST00000555557 DLG5Q8TDM6 1919 aa13.3□□□□□ -0.28
SRP54-208ENST00000555557 IL2RBP14784 551 aa13.3□□□□□ -0.28
SRP54-208ENST00000555557 MEX3CQ5U5Q3 659 aaKnown RBP13.3□□□□□ -0.28
SRP54-208ENST00000555557 MPRIPQ6WCQ1 1025 aa13.3□□□□□ -0.28
SRP54-208ENST00000555557 LGR6Q9HBX8 967 aa13.3□□□□□ -0.28
SRP54-208ENST00000555557 SUPT16HQ9Y5B9 1047 aaKnown RBP13.3□□□□□ -0.28
SRP54-208ENST00000555557 MAP3K5Q99683 1374 aa13.3□□□□□ -0.28
SRP54-208ENST00000555557 SLIT2O94813 1529 aa13.3□□□□□ -0.28
SRP54-208ENST00000555557 AKAP4Q5JQC9 854 aa13.29□□□□□ -0.28
SRP54-208ENST00000555557 C1orf141Q5JVX7 400 aa13.29□□□□□ -0.28
SRP54-208ENST00000555557 CCDC9Q9Y3X0 531 aaKnown RBP13.29□□□□□ -0.28
SRP54-208ENST00000555557 IL16Q14005 1332 aa13.29□□□□□ -0.28
SRP54-208ENST00000555557 UNC5CLQ8IV45 518 aa13.29□□□□□ -0.28
SRP54-208ENST00000555557 MYH16Q9H6N6 1097 aa13.29□□□□□ -0.28
SRP54-208ENST00000555557 SPG7Q9UQ90 795 aa13.29□□□□□ -0.28
SRP54-208ENST00000555557 PLCH1Q4KWH8 1693 aa13.28□□□□□ -0.28
SRP54-208ENST00000555557 FANCIQ9NVI1 1328 aa13.28□□□□□ -0.28
SRP54-208ENST00000555557 HTATSF1O43719 755 aaKnown RBP13.28□□□□□ -0.28
SRP54-208ENST00000555557 FNBP4Q8N3X1 1017 aaPredicted RBP13.28□□□□□ -0.28
SRP54-208ENST00000555557 MIS18AQ9NYP9 233 aa13.28□□□□□ -0.28
SRP54-208ENST00000555557 CYP27B1O15528 508 aa13.27□□□□□ -0.28
SRP54-208ENST00000555557 CALD1Q05682 793 aaKnown RBP13.27□□□□□ -0.28
SRP54-208ENST00000555557 ZCRB1Q8TBF4 217 aaKnown RBP13.27□□□□□ -0.28
SRP54-208ENST00000555557 CFAP44Q96MT7 982 aa13.27□□□□□ -0.28
SRP54-208ENST00000555557 IFT57Q9NWB7 429 aa13.27□□□□□ -0.28
SRP54-208ENST00000555557 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.27□□□□□ -0.282e-9■■■□□ 17
SRP54-208ENST00000555557 RGS17Q9UGC6 210 aaPredicted RBP13.27□□□□□ -0.28
SRP54-208ENST00000555557 BCL9LQ86UU0 1499 aa13.27□□□□□ -0.28
SRP54-208ENST00000555557 SPATA31A1Q5TZJ5 1347 aa13.27□□□□□ -0.29
SRP54-208ENST00000555557 OVOS2A0A0G2JMS6 1433 aa13.27□□□□□ -0.29
SRP54-208ENST00000555557 ZNF853P0CG23 659 aa13.27□□□□□ -0.29
SRP54-208ENST00000555557 PHKG2P15735 406 aa13.27□□□□□ -0.29
SRP54-208ENST00000555557 GNAI1P63096 354 aa13.27□□□□□ -0.29
SRP54-208ENST00000555557 MBIPQ9NS73 344 aa13.27□□□□□ -0.29
SRP54-208ENST00000555557 USP21Q9UK80 565 aa13.27□□□□□ -0.29
SRP54-208ENST00000555557 EXOSC9Q06265 439 aaKnown RBP13.26□□□□□ -0.29
SRP54-208ENST00000555557 IFNL2Q8IZJ0 200 aa13.26□□□□□ -0.29
SRP54-208ENST00000555557 DDX54Q8TDD1 881 aaKnown RBP13.26□□□□□ -0.29
SRP54-208ENST00000555557 RCAN3Q9UKA8 241 aa13.26□□□□□ -0.29
SRP54-208ENST00000555557 SPATA31A5Q5VU36 1347 aa13.26□□□□□ -0.29
SRP54-208ENST00000555557 SPATA31A7Q8IWB4 1347 aa13.26□□□□□ -0.29
SRP54-208ENST00000555557 RNMTO43148 476 aaKnown RBP13.25□□□□□ -0.29
SRP54-208ENST00000555557 NRAPQ86VF7 1730 aa13.25□□□□□ -0.29
SRP54-208ENST00000555557 AFF2P51816 1311 aa13.24□□□□□ -0.29
SRP54-208ENST00000555557 CEMIPQ8WUJ3 1361 aa13.24□□□□□ -0.29
SRP54-208ENST00000555557 CHL1O00533 1208 aa13.24□□□□□ -0.29
SRP54-208ENST00000555557 ELL2O00472 640 aaPredicted RBP13.23□□□□□ -0.29
SRP54-208ENST00000555557 VPS72Q15906 364 aa13.23□□□□□ -0.29
SRP54-208ENST00000555557 DISP2A7MBM2 1401 aa13.23□□□□□ -0.29
SRP54-208ENST00000555557 TAF7Q15545 349 aaPredicted RBP13.23□□□□□ -0.29
SRP54-208ENST00000555557 KRT24Q2M2I5 525 aa13.23□□□□□ -0.29
SRP54-208ENST00000555557 TSPYL4Q9UJ04 414 aa13.23□□□□□ -0.29
SRP54-208ENST00000555557 THRAP3Q9Y2W1 955 aaKnown RBP13.23□□□□□ -0.29
SRP54-208ENST00000555557 PCDH11XQ9BZA7 1347 aa13.22□□□□□ -0.29
SRP54-208ENST00000555557 PCDH11YQ9BZA8 1340 aa13.22□□□□□ -0.29
SRP54-208ENST00000555557 NWD2Q9ULI1 1742 aa13.22□□□□□ -0.29
SRP54-208ENST00000555557 TEFQ10587 303 aa13.22□□□□□ -0.29
SRP54-208ENST00000555557 FAM98CQ17RN3 349 aaKnown RBP13.22□□□□□ -0.29
SRP54-208ENST00000555557 TSPYL6Q8N831 410 aa13.22□□□□□ -0.29
SRP54-208ENST00000555557 KDM6AO15550 1401 aaPredicted RBP13.22□□□□□ -0.29
SRP54-208ENST00000555557 EXOC5O00471 708 aa13.21□□□□□ -0.29
SRP54-208ENST00000555557 C8orf58Q8NAV2 365 aa13.21□□□□□ -0.29
SRP54-208ENST00000555557 PLEKHG2Q9H7P9 1386 aa13.21□□□□□ -0.29
SRP54-208ENST00000555557 BCAR3O75815 825 aa13.21□□□□□ -0.3
SRP54-208ENST00000555557 IRX6P78412 446 aaPredicted RBP13.21□□□□□ -0.3
SRP54-208ENST00000555557 POTEAQ6S8J7 498 aa13.21□□□□□ -0.3
SRP54-208ENST00000555557 DCAF5Q96JK2 942 aa13.21□□□□□ -0.3
SRP54-208ENST00000555557 GTF3C3Q9Y5Q9 886 aa13.21□□□□□ -0.3
SRP54-208ENST00000555557 PKD1L3Q7Z443 1732 aa13.2□□□□□ -0.3
SRP54-208ENST00000555557 PARP4Q9UKK3 1724 aaKnown RBP13.2□□□□□ -0.3
SRP54-208ENST00000555557 KCNQ3O43525 872 aa13.2□□□□□ -0.3
SRP54-208ENST00000555557 BARGINQ6ZT62 677 aa13.2□□□□□ -0.3
SRP54-208ENST00000555557 NFATC2IPQ8NCF5 419 aa13.2□□□□□ -0.3
SRP54-208ENST00000555557 BCL2L13Q9BXK5 485 aa13.2□□□□□ -0.3
SRP54-208ENST00000555557 BTBD11A6QL63 1104 aa13.19□□□□□ -0.3
SRP54-208ENST00000555557 PLIN1O60240 522 aa13.19□□□□□ -0.3
SRP54-208ENST00000555557 HSP90AB1P08238 724 aaKnown RBP13.19□□□□□ -0.3
SRP54-208ENST00000555557 DDB1Q16531 1140 aa13.19□□□□□ -0.3
SRP54-208ENST00000555557 RARSP54136 660 aaKnown RBP13.19□□□□□ -0.3
SRP54-208ENST00000555557 NKX1-1Q15270 411 aaPredicted RBP13.19□□□□□ -0.3
SRP54-208ENST00000555557 CDCA7Q9BWT1 371 aaPredicted RBP13.19□□□□□ -0.3
SRP54-208ENST00000555557 SLC52A2Q9HAB3 445 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms