RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.67□□□□□ -0.86
SCFD1-212ENST00000554486 SKOR1P84550 965 aa9.67□□□□□ -0.86
SCFD1-212ENST00000554486 NDUFB9Q9Y6M9 179 aa9.67□□□□□ -0.86
SCFD1-212ENST00000554486 TTC37Q6PGP7 1564 aa9.67□□□□□ -0.86
SCFD1-212ENST00000554486 PHLDB1Q86UU1 1377 aa9.66□□□□□ -0.86
SCFD1-212ENST00000554486 EHBP1Q8NDI1 1231 aa9.66□□□□□ -0.86
SCFD1-212ENST00000554486 ARMC2Q8NEN0 867 aa9.66□□□□□ -0.86
SCFD1-212ENST00000554486 BAP1Q92560 729 aa9.66□□□□□ -0.86
SCFD1-212ENST00000554486 ABCA9Q8IUA7 1624 aa9.65□□□□□ -0.86
SCFD1-212ENST00000554486 TRAK2O60296 914 aa9.65□□□□□ -0.86
SCFD1-212ENST00000554486 SH3BP2P78314 561 aa9.65□□□□□ -0.86
SCFD1-212ENST00000554486 PROSER2Q86WR7 435 aaPredicted RBP9.65□□□□□ -0.86
SCFD1-212ENST00000554486 DIP2BQ9P265 1576 aa9.65□□□□□ -0.86
SCFD1-212ENST00000554486 CDC42BPAQ5VT25 1732 aa9.65□□□□□ -0.87
SCFD1-212ENST00000554486 GLI2P10070 1586 aa9.64□□□□□ -0.87
SCFD1-212ENST00000554486 KIF13AQ9H1H9 1805 aa9.64□□□□□ -0.87
SCFD1-212ENST00000554486 ABL2P42684 1182 aa9.64□□□□□ -0.87
SCFD1-212ENST00000554486 GPATCH8Q9UKJ3 1502 aaKnown RBP9.63□□□□□ -0.87
SCFD1-212ENST00000554486 APBB1O00213 710 aa9.63□□□□□ -0.87
SCFD1-212ENST00000554486 RAD21O60216 631 aa9.63□□□□□ -0.87
SCFD1-212ENST00000554486 LINC01559Q495D7 138 aa9.63□□□□□ -0.87
SCFD1-212ENST00000554486 ZNF511Q8NB15 262 aa9.63□□□□□ -0.87
SCFD1-212ENST00000554486 FKBPLQ9UIM3 349 aa9.63□□□□□ -0.87
SCFD1-212ENST00000554486 CCNB3Q8WWL7 1395 aa9.63□□□□□ -0.87
SCFD1-212ENST00000554486 MYO5CQ9NQX4 1742 aa9.62□□□□□ -0.87
SCFD1-212ENST00000554486 VARSP26640 1264 aaKnown RBP9.62□□□□□ -0.87
SCFD1-212ENST00000554486 MYT1Q01538 1121 aa9.62□□□□□ -0.87
SCFD1-212ENST00000554486 OCSTAMPQ9BR26 566 aa9.62□□□□□ -0.87
SCFD1-212ENST00000554486 C1orf115Q9H7X2 142 aa9.62□□□□□ -0.87
SCFD1-212ENST00000554486 MYOM3Q5VTT5 1437 aa9.62□□□□□ -0.87
SCFD1-212ENST00000554486 CDC42BPBQ9Y5S2 1711 aa9.62□□□□□ -0.87
SCFD1-212ENST00000554486 PREX2Q70Z35 1606 aa9.61□□□□□ -0.87
SCFD1-212ENST00000554486 MAP3K4Q9Y6R4 1608 aa9.61□□□□□ -0.87
SCFD1-212ENST00000554486 FAM69CQ0P6D2 419 aa9.61□□□□□ -0.87
SCFD1-212ENST00000554486 ITSN2Q9NZM3 1697 aa9.61□□□□□ -0.87
SCFD1-212ENST00000554486 PLCH2O75038 1416 aa9.6□□□□□ -0.87
SCFD1-212ENST00000554486 CD109Q6YHK3 1445 aa9.6□□□□□ -0.87
SCFD1-212ENST00000554486 FGD6Q6ZV73 1430 aa9.6□□□□□ -0.87
SCFD1-212ENST00000554486 AVPP01185 164 aa9.6□□□□□ -0.87
SCFD1-212ENST00000554486 MIA2Q96PC5 1412 aa9.59□□□□□ -0.87
SCFD1-212ENST00000554486 RRBP1Q9P2E9 1410 aaKnown RBP9.59□□□□□ -0.87
SCFD1-212ENST00000554486 POM121CA8CG34 1229 aa9.59□□□□□ -0.87
SCFD1-212ENST00000554486 LCE2BO14633 110 aa9.59□□□□□ -0.87
SCFD1-212ENST00000554486 ALDH1A1P00352 501 aa9.59□□□□□ -0.87
SCFD1-212ENST00000554486 AGERQ15109 404 aa9.59□□□□□ -0.87
SCFD1-212ENST00000554486 CTC1Q2NKJ3 1217 aa9.59□□□□□ -0.87
SCFD1-212ENST00000554486 NBPF14Q5TI25 921 aa9.59□□□□□ -0.87
SCFD1-212ENST00000554486 ARAP3Q8WWN8 1544 aa9.59□□□□□ -0.87
SCFD1-212ENST00000554486 PPRC1Q5VV67 1664 aaKnown RBP9.58□□□□□ -0.88
SCFD1-212ENST00000554486 TSPOAP1O95153 1857 aa9.58□□□□□ -0.88
SCFD1-212ENST00000554486 PTPN23Q9H3S7 1636 aa9.58□□□□□ -0.88
SCFD1-212ENST00000554486 SIAH2O43255 324 aa9.58□□□□□ -0.88
SCFD1-212ENST00000554486 SMPD1P17405 629 aa9.58□□□□□ -0.88
SCFD1-212ENST00000554486 FAM174AQ8TBP5 190 aa9.58□□□□□ -0.88
SCFD1-212ENST00000554486 PRM3Q9NNZ6 103 aa9.58□□□□□ -0.88
SCFD1-212ENST00000554486 CFDP1Q9UEE9 299 aaPredicted RBP9.58□□□□□ -0.88
SCFD1-212ENST00000554486 WASF2Q9Y6W5 498 aa9.58□□□□□ -0.88
SCFD1-212ENST00000554486 ZNF644Q9H582 1327 aaPredicted RBP9.57□□□□□ -0.88
SCFD1-212ENST00000554486 ARHGAP5Q13017 1502 aa9.57□□□□□ -0.88
SCFD1-212ENST00000554486 J3QL48 77 aa9.57□□□□□ -0.88
SCFD1-212ENST00000554486 AXIN1O15169 862 aa9.57□□□□□ -0.88
SCFD1-212ENST00000554486 BPHLQ86WA6 291 aaPredicted RBP9.57□□□□□ -0.88
SCFD1-212ENST00000554486 GPKOWQ92917 476 aaPredicted RBP eCLIP9.57□□□□□ -0.88
SCFD1-212ENST00000554486 ZNF777Q9ULD5 760 aaPredicted RBP9.57□□□□□ -0.88
SCFD1-212ENST00000554486 ZNF330Q9Y3S2 320 aaPredicted RBP9.57□□□□□ -0.88
SCFD1-212ENST00000554486 TCOF1Q13428 1488 aaKnown RBP9.57□□□□□ -0.88
SCFD1-212ENST00000554486 SAMD9LQ8IVG5 1584 aa9.57□□□□□ -0.88
SCFD1-212ENST00000554486 ZC3H4Q9UPT8 1303 aaKnown RBP9.56□□□□□ -0.88
SCFD1-212ENST00000554486 CAMSAP2Q08AD1 1489 aa9.56□□□□□ -0.88
SCFD1-212ENST00000554486 FBXO45P0C2W1 286 aa9.56□□□□□ -0.88
SCFD1-212ENST00000554486 VAC14Q08AM6 782 aa9.56□□□□□ -0.88
SCFD1-212ENST00000554486 SH3BP5LQ7L8J4 393 aa9.56□□□□□ -0.88
SCFD1-212ENST00000554486 CRIPAKQ8N1N5 446 aa9.56□□□□□ -0.88
SCFD1-212ENST00000554486 MPNDQ8N594 471 aa9.56□□□□□ -0.88
SCFD1-212ENST00000554486 PNMA1Q8ND90 353 aa9.56□□□□□ -0.88
SCFD1-212ENST00000554486 ADAMTS19Q8TE59 1207 aa9.56□□□□□ -0.88
SCFD1-212ENST00000554486 FANCAO15360 1455 aa9.55□□□□□ -0.88
SCFD1-212ENST00000554486 SMCPP49901 116 aaPredicted RBP9.55□□□□□ -0.88
SCFD1-212ENST00000554486 C4orf48Q5BLP8 95 aa9.55□□□□□ -0.88
SCFD1-212ENST00000554486 EFCAB2Q5VUJ9 269 aa9.55□□□□□ -0.88
SCFD1-212ENST00000554486 PDXDC2PQ6P474 469 aa9.55□□□□□ -0.88
SCFD1-212ENST00000554486 AAASQ9NRG9 546 aa9.55□□□□□ -0.88
SCFD1-212ENST00000554486 ZNF787Q6DD87 383 aa9.54□□□□□ -0.88
SCFD1-212ENST00000554486 SH3RF1Q7Z6J0 888 aa9.54□□□□□ -0.88
SCFD1-212ENST00000554486 FOXJ1Q92949 421 aa9.54□□□□□ -0.88
SCFD1-212ENST00000554486 CFAP74Q9C0B2 1584 aa9.54□□□□□ -0.88
SCFD1-212ENST00000554486 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.53□□□□□ -0.88
SCFD1-212ENST00000554486 ABCC1P33527 1531 aa9.53□□□□□ -0.88
SCFD1-212ENST00000554486 FAM50AQ14320 339 aaKnown RBP9.53□□□□□ -0.88
SCFD1-212ENST00000554486 AKNAQ7Z591 1439 aa9.53□□□□□ -0.88
SCFD1-212ENST00000554486 NEO1Q92859 1461 aa9.53□□□□□ -0.88
SCFD1-212ENST00000554486 MBD5Q9P267 1494 aa9.53□□□□□ -0.88
SCFD1-212ENST00000554486 SYCP2Q9BX26 1530 aa9.52□□□□□ -0.88
SCFD1-212ENST00000554486 ARHGEF12Q9NZN5 1544 aa9.52□□□□□ -0.88
SCFD1-212ENST00000554486 ZBBXA8MT70 800 aa9.52□□□□□ -0.89
SCFD1-212ENST00000554486 TRIM26Q12899 539 aaPredicted RBP9.52□□□□□ -0.89
SCFD1-212ENST00000554486 NR1H3Q13133 447 aa9.52□□□□□ -0.89
SCFD1-212ENST00000554486 WASHC4Q2M389 1173 aa9.52□□□□□ -0.89
SCFD1-212ENST00000554486 KIAA1107Q9UPP5 1409 aa9.52□□□□□ -0.89
SCFD1-212ENST00000554486 PLEKHH2Q8IVE3 1493 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms