RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PALD1Q9ULE6 856 aa5.95□□□□□ -1.46
LIMA1-214ENST00000552783 ABCC4O15439 1325 aa5.95□□□□□ -1.46
LIMA1-214ENST00000552783 USP32Q8NFA0 1604 aa5.94□□□□□ -1.46
LIMA1-214ENST00000552783 DIAPH1O60610 1272 aaKnown RBP5.94□□□□□ -1.46
LIMA1-214ENST00000552783 NCBP3Q53F19 620 aaKnown RBP5.94□□□□□ -1.46
LIMA1-214ENST00000552783 SASS6Q6UVJ0 657 aa5.94□□□□□ -1.46
LIMA1-214ENST00000552783 CABP1Q9NZU7 370 aa5.94□□□□□ -1.46
LIMA1-214ENST00000552783 DCTPP1Q9H773 170 aa5.94□□□□□ -1.46
LIMA1-214ENST00000552783 TCHHQ07283 1943 aa5.94□□□□□ -1.46
LIMA1-214ENST00000552783 LRRC7Q96NW7 1537 aa5.94□□□□□ -1.46
LIMA1-214ENST00000552783 ZCCHC11Q5TAX3 1644 aaKnown RBP5.94□□□□□ -1.46
LIMA1-214ENST00000552783 TRHP20396 242 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-214ENST00000552783 TMX3Q96JJ7 454 aa5.94□□□□□ -1.46
LIMA1-214ENST00000552783 KIF13AQ9H1H9 1805 aa5.94□□□□□ -1.46
LIMA1-214ENST00000552783 PIK3R4Q99570 1358 aa5.94□□□□□ -1.46
LIMA1-214ENST00000552783 PTCH1Q13635 1447 aa5.94□□□□□ -1.46
LIMA1-214ENST00000552783 DIP2BQ9P265 1576 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 NEK4P51957 841 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 WAPLQ7Z5K2 1190 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 SMAP1Q8IYB5 467 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-214ENST00000552783 USP25Q9UHP3 1055 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 CD163L1Q9NR16 1453 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 SPDYE4A6NLX3 237 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 AP5Z1O43299 807 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 BRPF1P55201 1214 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-214ENST00000552783 TWISTNBQ3B726 338 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-214ENST00000552783 LARP6Q9BRS8 491 aaKnown RBP5.93□□□□□ -1.46
LIMA1-214ENST00000552783 IL25Q9H293 177 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 CCDC39Q9UFE4 941 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 ZRANB1Q9UGI0 708 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 PTMAP06454 111 aaKnown RBP5.93□□□□□ -1.46
LIMA1-214ENST00000552783 CCDC94Q9BW85 323 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-214ENST00000552783 EMILIN1Q9Y6C2 1016 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 ASXL2Q76L83 1435 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 ATP10DQ9P241 1426 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 ADGRB3O60242 1522 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 ATP7AQ04656 1500 aa5.93□□□□□ -1.46
LIMA1-214ENST00000552783 DNTTIP2Q5QJE6 756 aaKnown RBP5.92□□□□□ -1.46
LIMA1-214ENST00000552783 MYRIPQ8NFW9 859 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 MAP7D2Q96T17 732 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 MEIS3Q99687 375 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 UPF3BQ9BZI7 483 aaKnown RBP5.92□□□□□ -1.46
LIMA1-214ENST00000552783 POLKQ9UBT6 870 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 NPATQ14207 1427 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 EFCAB6Q5THR3 1501 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 SETBP1Q9Y6X0 1596 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 BRD1O95696 1058 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 FAM69CQ0P6D2 419 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 CAMSAP1Q5T5Y3 1602 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 INTS3Q68E01 1043 aaKnown RBP5.92□□□□□ -1.46
LIMA1-214ENST00000552783 PNPLA6Q8IY17 1366 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 GLI2P10070 1586 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 ST18O60284 1047 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 ZNF853P0CG23 659 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 DMTNQ08495 405 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 CEP85Q6P2H3 762 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 ARHGAP45Q92619 1136 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 CDK19Q9BWU1 502 aa5.92□□□□□ -1.46
LIMA1-214ENST00000552783 CWC22Q9HCG8 908 aaKnown RBP5.92□□□□□ -1.46
LIMA1-214ENST00000552783 PPLO60437 1756 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 FAM135BQ49AJ0 1406 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 NSD2O96028 1365 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 FCHSD2O94868 740 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 HCLS1P14317 486 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-214ENST00000552783 KIAA2012Q0VF49 1180 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 NOLC1Q14978 699 aaKnown RBP eCLIP5.91□□□□□ -1.46
LIMA1-214ENST00000552783 RRS1Q15050 365 aaKnown RBP5.91□□□□□ -1.46
LIMA1-214ENST00000552783 CSPP1Q1MSJ5 1256 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 PPP4R3BQ5MIZ7 849 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 USP48Q86UV5 1035 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 TXNDC2Q86VQ3 553 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 TSPY26PQ9H489 355 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 ARHGEF28Q8N1W1 1705 aaKnown RBP5.91□□□□□ -1.46
LIMA1-214ENST00000552783 NFE2L2Q16236 605 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 BCL11BQ9C0K0 894 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-214ENST00000552783 RGS12O14924 1447 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 ADCY5O95622 1261 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 MCM5P33992 734 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 SLC4A10Q6U841 1118 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 UNC5CLQ8IV45 518 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 ANKRD44Q8N8A2 993 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 NEURL4Q96JN8 1562 aa5.91□□□□□ -1.46
LIMA1-214ENST00000552783 MSH6P52701 1360 aa5.9□□□□□ -1.46
LIMA1-214ENST00000552783 KCNF1Q9H3M0 494 aa5.9□□□□□ -1.46
LIMA1-214ENST00000552783 BCL2L12Q9HB09 334 aa5.9□□□□□ -1.46
LIMA1-214ENST00000552783 PYCARDQ9ULZ3 195 aa5.9□□□□□ -1.46
LIMA1-214ENST00000552783 ARHGEF40Q8TER5 1519 aa5.9□□□□□ -1.47
LIMA1-214ENST00000552783 F6X3S4 739 aa5.9□□□□□ -1.47
LIMA1-214ENST00000552783 PIBF1Q8WXW3 757 aa5.9□□□□□ -1.47
LIMA1-214ENST00000552783 NECTIN2Q92692 538 aa5.9□□□□□ -1.47
LIMA1-214ENST00000552783 EXOC6BQ9Y2D4 811 aa5.9□□□□□ -1.47
LIMA1-214ENST00000552783 ERC2O15083 957 aa5.89□□□□□ -1.47
LIMA1-214ENST00000552783 U2AF2P26368 475 aaKnown RBP eCLIP5.89□□□□□ -1.47
LIMA1-214ENST00000552783 PLCB2Q00722 1185 aa5.89□□□□□ -1.47
LIMA1-214ENST00000552783 NAA30Q147X3 362 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-214ENST00000552783 MIS18AQ9NYP9 233 aa5.89□□□□□ -1.47
LIMA1-214ENST00000552783 CNPY2Q9Y2B0 182 aa5.89□□□□□ -1.47
LIMA1-214ENST00000552783 RTL1A6NKG5 1358 aa5.89□□□□□ -1.47
LIMA1-214ENST00000552783 PDE1AP54750 535 aa5.89□□□□□ -1.47
LIMA1-214ENST00000552783 LTV1Q96GA3 475 aaPredicted RBP5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms