RNA–Protein interactions for RNA: ENST00000552645.5

LETMD1-234, Transcript of LETM1 domain containing 1, humanhuman

TSL 1 (best)

Gene LETMD1, Length 1,623 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-234ENST00000552645 DDX54Q8TDD1 881 aaKnown RBP13.32□□□□□ -0.28
LETMD1-234ENST00000552645 SULT6B1Q6IMI4 303 aa13.31□□□□□ -0.28
LETMD1-234ENST00000552645 TNS2Q63HR2 1409 aa13.31□□□□□ -0.28
LETMD1-234ENST00000552645 HMOX1P09601 288 aa13.31□□□□□ -0.28
LETMD1-234ENST00000552645 AEBP1Q8IUX7 1158 aa13.31□□□□□ -0.28
LETMD1-234ENST00000552645 PRKRIP1Q9H875 184 aaPredicted RBP13.31□□□□□ -0.28
LETMD1-234ENST00000552645 RGPD1P0DJD0 1748 aa13.3□□□□□ -0.28
LETMD1-234ENST00000552645 IGSF1Q8N6C5 1336 aa13.3□□□□□ -0.28
LETMD1-234ENST00000552645 MYBBP1AQ9BQG0 1328 aaKnown RBP13.3□□□□□ -0.28
LETMD1-234ENST00000552645 COL3A1P02461 1466 aaPredicted RBP13.3□□□□□ -0.28
LETMD1-234ENST00000552645 SOCS7O14512 581 aa13.3□□□□□ -0.28
LETMD1-234ENST00000552645 MARCH10Q8NA82 808 aaPredicted RBP13.3□□□□□ -0.28
LETMD1-234ENST00000552645 ZCRB1Q8TBF4 217 aaKnown RBP13.29□□□□□ -0.28
LETMD1-234ENST00000552645 OVOS2A0A0G2JMS6 1433 aa13.29□□□□□ -0.28
LETMD1-234ENST00000552645 SHANK3Q9BYB0 1731 aa13.29□□□□□ -0.28
LETMD1-234ENST00000552645 ANP32CO43423 234 aa13.28□□□□□ -0.28
LETMD1-234ENST00000552645 FAM196AQ6ZSG2 479 aa13.28□□□□□ -0.28
LETMD1-234ENST00000552645 NUDCQ9Y266 331 aa13.28□□□□□ -0.28
LETMD1-234ENST00000552645 U2AF1L5P0DN76 240 aaPredicted RBP13.28□□□□□ -0.28
LETMD1-234ENST00000552645 U2AF1Q01081 240 aaKnown RBP eCLIP13.28□□□□□ -0.28
LETMD1-234ENST00000552645 NCAPD2Q15021 1401 aa13.28□□□□□ -0.28
LETMD1-234ENST00000552645 UPF1Q92900 1129 aaKnown RBP eCLIP13.27□□□□□ -0.292e-8■■■□□ 17.9
LETMD1-234ENST00000552645 PKD1L3Q7Z443 1732 aa13.26□□□□□ -0.29
LETMD1-234ENST00000552645 TRIM37O94972 964 aa13.26□□□□□ -0.29
LETMD1-234ENST00000552645 SPG7Q9UQ90 795 aa13.26□□□□□ -0.29
LETMD1-234ENST00000552645 SBF2Q86WG5 1849 aa13.26□□□□□ -0.29
LETMD1-234ENST00000552645 SF3B2Q13435 895 aaKnown RBP13.25□□□□□ -0.29
LETMD1-234ENST00000552645 ACSBG1Q96GR2 724 aa13.25□□□□□ -0.29
LETMD1-234ENST00000552645 PCDH11XQ9BZA7 1347 aa13.25□□□□□ -0.29
LETMD1-234ENST00000552645 PCDH11YQ9BZA8 1340 aa13.25□□□□□ -0.29
LETMD1-234ENST00000552645 PLEKHO1Q53GL0 409 aaPredicted RBP13.24□□□□□ -0.29
LETMD1-234ENST00000552645 KDRP35968 1356 aa13.23□□□□□ -0.29
LETMD1-234ENST00000552645 DOT1LQ8TEK3 1739 aa13.23□□□□□ -0.29
LETMD1-234ENST00000552645 CYP27B1O15528 508 aa13.23□□□□□ -0.29
LETMD1-234ENST00000552645 ZNF530Q6P9A1 599 aaPredicted RBP13.23□□□□□ -0.29
LETMD1-234ENST00000552645 SYTL4Q96C24 671 aaPredicted RBP13.23□□□□□ -0.29
LETMD1-234ENST00000552645 PRKCSHP14314 528 aaPredicted RBP13.22□□□□□ -0.29
LETMD1-234ENST00000552645 PRKAR2BP31323 418 aa13.22□□□□□ -0.29
LETMD1-234ENST00000552645 TNS1Q9HBL0 1735 aaKnown RBP13.22□□□□□ -0.29
LETMD1-234ENST00000552645 KCNQ2O43526 872 aa13.21□□□□□ -0.29
LETMD1-234ENST00000552645 WDR43Q15061 677 aaKnown RBP eCLIP13.21□□□□□ -0.29
LETMD1-234ENST00000552645 AMOTQ4VCS5 1084 aa13.21□□□□□ -0.29
LETMD1-234ENST00000552645 C1orf141Q5JVX7 400 aa13.21□□□□□ -0.29
LETMD1-234ENST00000552645 PTF1AQ7RTS3 328 aa13.21□□□□□ -0.29
LETMD1-234ENST00000552645 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.21□□□□□ -0.29
LETMD1-234ENST00000552645 APBA3O96018 575 aa13.21□□□□□ -0.3
LETMD1-234ENST00000552645 CCDC125Q86Z20 511 aa13.21□□□□□ -0.3
LETMD1-234ENST00000552645 IFNL2Q8IZJ0 200 aa13.21□□□□□ -0.3
LETMD1-234ENST00000552645 PHKG2P15735 406 aa13.2□□□□□ -0.3
LETMD1-234ENST00000552645 DEFB132Q7Z7B7 95 aa13.2□□□□□ -0.3
LETMD1-234ENST00000552645 RSPH6AQ9H0K4 717 aa13.2□□□□□ -0.3
LETMD1-234ENST00000552645 VIRMAQ69YN4 1812 aaKnown RBP13.19□□□□□ -0.3
LETMD1-234ENST00000552645 NHSQ6T4R5 1651 aa13.19□□□□□ -0.3
LETMD1-234ENST00000552645 NEFMP07197 916 aa13.19□□□□□ -0.3
LETMD1-234ENST00000552645 PRIM1P49642 420 aaKnown RBP13.19□□□□□ -0.3
LETMD1-234ENST00000552645 BTAF1O14981 1849 aa13.19□□□□□ -0.3
LETMD1-234ENST00000552645 ITGB4P16144 1822 aa13.19□□□□□ -0.3
LETMD1-234ENST00000552645 TOGARAM1Q9Y4F4 1720 aa13.18□□□□□ -0.3
LETMD1-234ENST00000552645 FCHSD2O94868 740 aa13.18□□□□□ -0.3
LETMD1-234ENST00000552645 BAG6P46379 1132 aa13.18□□□□□ -0.3
LETMD1-234ENST00000552645 MTHFSDQ2M296 383 aaKnown RBP13.18□□□□□ -0.3
LETMD1-234ENST00000552645 CCDC184Q52MB2 194 aa13.18□□□□□ -0.3
LETMD1-234ENST00000552645 PHACTR3Q96KR7 559 aa13.18□□□□□ -0.3
LETMD1-234ENST00000552645 BCL11BQ9C0K0 894 aaPredicted RBP13.18□□□□□ -0.3
LETMD1-234ENST00000552645 MRS2Q9HD23 443 aa13.18□□□□□ -0.3
LETMD1-234ENST00000552645 EN1Q05925 392 aaPredicted RBP13.17□□□□□ -0.3
LETMD1-234ENST00000552645 MPRIPQ6WCQ1 1025 aa13.17□□□□□ -0.3
LETMD1-234ENST00000552645 ERICH6Q7L0X2 663 aa13.17□□□□□ -0.3
LETMD1-234ENST00000552645 BCL9O00512 1426 aa13.17□□□□□ -0.3
LETMD1-234ENST00000552645 PLEKHG2Q9H7P9 1386 aa13.16□□□□□ -0.3
LETMD1-234ENST00000552645 MAPK8IP3Q9UPT6 1336 aa13.16□□□□□ -0.3
LETMD1-234ENST00000552645 HSP90AB1P08238 724 aaKnown RBP13.16□□□□□ -0.3
LETMD1-234ENST00000552645 CCDC146Q8IYE0 955 aa13.16□□□□□ -0.3
LETMD1-234ENST00000552645 NKX1-1Q15270 411 aaPredicted RBP13.15□□□□□ -0.3
LETMD1-234ENST00000552645 AKAP4Q5JQC9 854 aa13.15□□□□□ -0.3
LETMD1-234ENST00000552645 GAS2L2Q8NHY3 880 aa13.15□□□□□ -0.3
LETMD1-234ENST00000552645 DCAF5Q96JK2 942 aa13.15□□□□□ -0.3
LETMD1-234ENST00000552645 PNNQ9H307 717 aaKnown RBP13.15□□□□□ -0.3
LETMD1-234ENST00000552645 ADAMTS8Q9UP79 889 aa13.15□□□□□ -0.3
LETMD1-234ENST00000552645 SCN11AQ9UI33 1791 aa13.15□□□□□ -0.3
LETMD1-234ENST00000552645 DLG5Q8TDM6 1919 aa13.14□□□□□ -0.31
LETMD1-234ENST00000552645 TMOD3Q9NYL9 352 aa13.14□□□□□ -0.31
LETMD1-234ENST00000552645 KDM6AO15550 1401 aaPredicted RBP13.13□□□□□ -0.31
LETMD1-234ENST00000552645 EZH2Q15910 746 aaKnown RBP13.13□□□□□ -0.31
LETMD1-234ENST00000552645 GNAT3A8MTJ3 354 aa13.13□□□□□ -0.31
LETMD1-234ENST00000552645 CABP4P57796 275 aa13.13□□□□□ -0.31
LETMD1-234ENST00000552645 PLEKHF1Q96S99 279 aa13.13□□□□□ -0.31
LETMD1-234ENST00000552645 LGR6Q9HBX8 967 aa13.13□□□□□ -0.31
LETMD1-234ENST00000552645 MAP3K5Q99683 1374 aa13.13□□□□□ -0.31
LETMD1-234ENST00000552645 PIGBQ92521 554 aa13.12□□□□□ -0.31
LETMD1-234ENST00000552645 NEUROD2Q15784 382 aa13.11□□□□□ -0.31
LETMD1-234ENST00000552645 RTF1Q92541 710 aaKnown RBP13.11□□□□□ -0.31
LETMD1-234ENST00000552645 SENP3-EIF4A1A0A087X0R7 540 aa13.1□□□□□ -0.31
LETMD1-234ENST00000552645 ERVV-2B6SEH9 535 aa13.1□□□□□ -0.31
LETMD1-234ENST00000552645 RNMTO43148 476 aaKnown RBP13.1□□□□□ -0.31
LETMD1-234ENST00000552645 FAM9BQ8IZU0 186 aa13.1□□□□□ -0.31
LETMD1-234ENST00000552645 NFATC2IPQ8NCF5 419 aa13.1□□□□□ -0.31
LETMD1-234ENST00000552645 CAMKK2Q96RR4 588 aa13.1□□□□□ -0.31
LETMD1-234ENST00000552645 RRP7AQ9Y3A4 280 aaKnown RBP13.1□□□□□ -0.31
LETMD1-234ENST00000552645 PLSCR1O15162 318 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms