RNA–Protein interactions for RNA: ENST00000550987.5

CPSF6-206, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-206ENST00000550987 CLP1Q92989 425 aaKnown RBP8.73□□□□□ -1.01
CPSF6-206ENST00000550987 SIRT1Q96EB6 747 aa8.73□□□□□ -1.01
CPSF6-206ENST00000550987 IL21Q9HBE4 155 aa8.73□□□□□ -1.01
CPSF6-206ENST00000550987 PHLDB3Q6NSJ2 640 aa8.72□□□□□ -1.01
CPSF6-206ENST00000550987 TRAF7Q6Q0C0 670 aa8.72□□□□□ -1.01
CPSF6-206ENST00000550987 TXNDC2Q86VQ3 553 aa8.72□□□□□ -1.01
CPSF6-206ENST00000550987 SLC10A4Q96EP9 437 aa8.72□□□□□ -1.01
CPSF6-206ENST00000550987 CHIC2Q9UKJ5 165 aa8.72□□□□□ -1.01
CPSF6-206ENST00000550987 SNAPC4Q5SXM2 1469 aa8.71□□□□□ -1.01
CPSF6-206ENST00000550987 SEC13P55735 322 aa8.71□□□□□ -1.02
CPSF6-206ENST00000550987 GTF2IP78347 998 aa8.71□□□□□ -1.02
CPSF6-206ENST00000550987 CLDN10P78369 228 aa8.71□□□□□ -1.02
CPSF6-206ENST00000550987 USP4Q13107 963 aa8.71□□□□□ -1.02
CPSF6-206ENST00000550987 SWI5Q1ZZU3 235 aa8.71□□□□□ -1.02
CPSF6-206ENST00000550987 ZNF516Q92618 1163 aa8.71□□□□□ -1.02
CPSF6-206ENST00000550987 CCDC85AQ96PX6 553 aaPredicted RBP8.71□□□□□ -1.02
CPSF6-206ENST00000550987 ESF1Q9H501 851 aaKnown RBP8.71□□□□□ -1.02
CPSF6-206ENST00000550987 AMOTL2Q9Y2J4 779 aa8.71□□□□□ -1.02
CPSF6-206ENST00000550987 FAM69CQ0P6D2 419 aa8.7□□□□□ -1.02
CPSF6-206ENST00000550987 CCDC102BQ68D86 513 aa8.7□□□□□ -1.02
CPSF6-206ENST00000550987 FOXJ1Q92949 421 aa8.7□□□□□ -1.02
CPSF6-206ENST00000550987 HINFPQ9BQA5 517 aa8.7□□□□□ -1.02
CPSF6-206ENST00000550987 SMARCA4P51532 1647 aa8.69□□□□□ -1.02
CPSF6-206ENST00000550987 NBPF20Q3BBV1 942 aa8.69□□□□□ -1.02
CPSF6-206ENST00000550987 ERFEQ4G0M1 354 aa8.69□□□□□ -1.02
CPSF6-206ENST00000550987 ZNF511Q8NB15 262 aa8.69□□□□□ -1.02
CPSF6-206ENST00000550987 BIN2Q9UBW5 565 aaPredicted RBP8.69□□□□□ -1.02
CPSF6-206ENST00000550987 PCDHB11Q9Y5F2 797 aa8.69□□□□□ -1.02
CPSF6-206ENST00000550987 TSPOAP1O95153 1857 aa8.68□□□□□ -1.02
CPSF6-206ENST00000550987 ZBTB24O43167 697 aaPredicted RBP8.68□□□□□ -1.02
CPSF6-206ENST00000550987 PRMT3O60678 531 aa8.68□□□□□ -1.02
CPSF6-206ENST00000550987 SH3RF1Q7Z6J0 888 aa8.68□□□□□ -1.02
CPSF6-206ENST00000550987 TPCN2Q8NHX9 752 aa8.68□□□□□ -1.02
CPSF6-206ENST00000550987 FCF1Q9Y324 198 aaKnown RBP8.68□□□□□ -1.02
CPSF6-206ENST00000550987 ATAD2BQ9ULI0 1458 aa8.68□□□□□ -1.02
CPSF6-206ENST00000550987 CEP164Q9UPV0 1460 aa8.68□□□□□ -1.02
CPSF6-206ENST00000550987 DIP2BQ9P265 1576 aa8.68□□□□□ -1.02
CPSF6-206ENST00000550987 ZBTB7BO15156 539 aaPredicted RBP8.67□□□□□ -1.02
CPSF6-206ENST00000550987 EIF4G3O43432 1585 aaKnown RBP8.67□□□□□ -1.02
CPSF6-206ENST00000550987 S1PR4O95977 384 aa8.67□□□□□ -1.02
CPSF6-206ENST00000550987 RAB15P59190 212 aa8.67□□□□□ -1.02
CPSF6-206ENST00000550987 TJAP1Q5JTD0 557 aa8.67□□□□□ -1.02
CPSF6-206ENST00000550987 ABCC10Q5T3U5 1492 aa8.67□□□□□ -1.02
CPSF6-206ENST00000550987 SLAIN2Q9P270 581 aa8.67□□□□□ -1.02
CPSF6-206ENST00000550987 SFI1A8K8P3 1242 aa8.66□□□□□ -1.02
CPSF6-206ENST00000550987 MYCP01106 439 aaPredicted RBP8.66□□□□□ -1.02
CPSF6-206ENST00000550987 CCDC125Q86Z20 511 aa8.66□□□□□ -1.02
CPSF6-206ENST00000550987 SIX5Q8N196 739 aa8.66□□□□□ -1.02
CPSF6-206ENST00000550987 PRIMPOLQ96LW4 560 aa8.66□□□□□ -1.02
CPSF6-206ENST00000550987 CDV3Q9UKY7 258 aaKnown RBP8.66□□□□□ -1.02
CPSF6-206ENST00000550987 SOWAHDA6NJG2 315 aa8.65□□□□□ -1.02
CPSF6-206ENST00000550987 ABL1P00519 1130 aa8.65□□□□□ -1.02
CPSF6-206ENST00000550987 SERPINB4P48594 390 aa8.65□□□□□ -1.02
CPSF6-206ENST00000550987 NKX2-3Q8TAU0 364 aa8.65□□□□□ -1.02
CPSF6-206ENST00000550987 KIAA1024Q9UPX6 916 aa8.65□□□□□ -1.02
CPSF6-206ENST00000550987 SEPT12Q8IYM1 358 aa8.64□□□□□ -1.03
CPSF6-206ENST00000550987 ERCC3P19447 782 aa8.63□□□□□ -1.03
CPSF6-206ENST00000550987 SCNN1AP37088 669 aa8.63□□□□□ -1.03
CPSF6-206ENST00000550987 MARSP56192 900 aaKnown RBP8.63□□□□□ -1.03
CPSF6-206ENST00000550987 C4orf48Q5BLP8 95 aa8.63□□□□□ -1.03
CPSF6-206ENST00000550987 LCE2DQ5TA82 110 aaPredicted RBP8.63□□□□□ -1.03
CPSF6-206ENST00000550987 PCDHGA11Q9Y5H2 935 aa8.63□□□□□ -1.03
CPSF6-206ENST00000550987 LGR5O75473 907 aa8.62□□□□□ -1.03
CPSF6-206ENST00000550987 SH3BP2P78314 561 aa8.62□□□□□ -1.03
CPSF6-206ENST00000550987 C1orf216Q8TAB5 229 aa8.62□□□□□ -1.03
CPSF6-206ENST00000550987 KCTD15Q96SI1 283 aaPredicted RBP8.62□□□□□ -1.03
CPSF6-206ENST00000550987 PCDH10Q9P2E7 1040 aa8.62□□□□□ -1.03
CPSF6-206ENST00000550987 LTBP4Q8N2S1 1624 aa8.62□□□□□ -1.03
CPSF6-206ENST00000550987 TRIM52Q96A61 297 aa8.61□□□□□ -1.03
CPSF6-206ENST00000550987 CXXC1Q9P0U4 656 aaPredicted RBP8.61□□□□□ -1.03
CPSF6-206ENST00000550987 ESPNB1AK53 854 aa8.6□□□□□ -1.03
CPSF6-206ENST00000550987 DKK1O94907 266 aa8.6□□□□□ -1.03
CPSF6-206ENST00000550987 VASH1Q7L8A9 365 aaPredicted RBP8.6□□□□□ -1.03
CPSF6-206ENST00000550987 TRMT44Q8IYL2 757 aaKnown RBP8.6□□□□□ -1.03
CPSF6-206ENST00000550987 KRTAP3-3Q9BYR6 98 aa8.6□□□□□ -1.03
CPSF6-206ENST00000550987 KRTAP3-2Q9BYR7 98 aa8.6□□□□□ -1.03
CPSF6-206ENST00000550987 POTEMA6NI47 508 aa8.59□□□□□ -1.03
CPSF6-206ENST00000550987 PPEF1O14829 653 aaPredicted RBP8.59□□□□□ -1.03
CPSF6-206ENST00000550987 VARSP26640 1264 aaKnown RBP8.59□□□□□ -1.03
CPSF6-206ENST00000550987 ARID5BQ14865 1188 aa8.59□□□□□ -1.03
CPSF6-206ENST00000550987 GLYCTKQ8IVS8 523 aa8.59□□□□□ -1.03
CPSF6-206ENST00000550987 C1QTNF2Q9BXJ5 285 aa8.59□□□□□ -1.03
CPSF6-206ENST00000550987 ANO2Q9NQ90 1003 aa8.59□□□□□ -1.03
CPSF6-206ENST00000550987 GGCXP38435 758 aa8.58□□□□□ -1.04
CPSF6-206ENST00000550987 TAS1R3Q7RTX0 852 aa8.58□□□□□ -1.04
CPSF6-206ENST00000550987 MKNK1Q9BUB5 465 aa8.58□□□□□ -1.04
CPSF6-206ENST00000550987 OCLNQ16625 522 aa8.57□□□□□ -1.04
CPSF6-206ENST00000550987 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.57□□□□□ -1.04
CPSF6-206ENST00000550987 TSEN2Q8NCE0 465 aaKnown RBP8.57□□□□□ -1.04
CPSF6-206ENST00000550987 EGFL7Q9UHF1 273 aa8.57□□□□□ -1.04
CPSF6-206ENST00000550987 URB2Q14146 1524 aaKnown RBP8.57□□□□□ -1.04
CPSF6-206ENST00000550987 RBM47A0AV96 593 aaKnown RBP8.56□□□□□ -1.04
CPSF6-206ENST00000550987 H3BRB1 525 aa8.56□□□□□ -1.04
CPSF6-206ENST00000550987 KCNC4Q03721 635 aa8.56□□□□□ -1.04
CPSF6-206ENST00000550987 ZNF211Q13398 564 aaPredicted RBP8.56□□□□□ -1.04
CPSF6-206ENST00000550987 GTF3C2Q8WUA4 911 aaPredicted RBP8.56□□□□□ -1.04
CPSF6-206ENST00000550987 TUT1Q9H6E5 874 aaKnown RBP8.56□□□□□ -1.04
CPSF6-206ENST00000550987 SYNJ1O43426 1573 aa8.56□□□□□ -1.04
CPSF6-206ENST00000550987 ERVH48-1M5A8F1 160 aa8.55□□□□□ -1.04
CPSF6-206ENST00000550987 BACH1O14867 736 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms