RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 SSH2Q76I76 1423 aa10.17□□□□□ -0.78
DEPDC4-208ENST00000549341 MINK1Q8N4C8 1332 aaPredicted RBP10.17□□□□□ -0.78
DEPDC4-208ENST00000549341 EVA1CP58658 441 aa10.17□□□□□ -0.78
DEPDC4-208ENST00000549341 PRR36Q9H6K5 1346 aa10.16□□□□□ -0.78
DEPDC4-208ENST00000549341 VARS2Q5ST30 1063 aaKnown RBP10.16□□□□□ -0.78
DEPDC4-208ENST00000549341 CFAP70Q5T0N1 1121 aa10.16□□□□□ -0.78
DEPDC4-208ENST00000549341 BCL11BQ9C0K0 894 aaPredicted RBP10.16□□□□□ -0.78
DEPDC4-208ENST00000549341 PDGFDQ9GZP0 370 aaPredicted RBP10.16□□□□□ -0.78
DEPDC4-208ENST00000549341 TRPM3Q9HCF6 1732 aaPredicted RBP10.16□□□□□ -0.78
DEPDC4-208ENST00000549341 EIF3AQ14152 1382 aaKnown RBP10.15□□□□□ -0.78
DEPDC4-208ENST00000549341 LARP1Q6PKG0 1096 aaKnown RBP10.15□□□□□ -0.78
DEPDC4-208ENST00000549341 BARGINQ6ZT62 677 aa10.15□□□□□ -0.78
DEPDC4-208ENST00000549341 TCP11L2Q8N4U5 519 aa10.15□□□□□ -0.78
DEPDC4-208ENST00000549341 FHDC1Q9C0D6 1143 aaPredicted RBP10.15□□□□□ -0.78
DEPDC4-208ENST00000549341 GIGYF1O75420 1035 aaPredicted RBP10.14□□□□□ -0.79
DEPDC4-208ENST00000549341 PTGER2P43116 358 aa10.14□□□□□ -0.79
DEPDC4-208ENST00000549341 SIRT1Q96EB6 747 aa10.14□□□□□ -0.79
DEPDC4-208ENST00000549341 TIMELESSQ9UNS1 1208 aa10.14□□□□□ -0.79
DEPDC4-208ENST00000549341 ALS2Q96Q42 1657 aa10.14□□□□□ -0.79
DEPDC4-208ENST00000549341 OVOS2A0A0G2JMS6 1433 aa10.14□□□□□ -0.79
DEPDC4-208ENST00000549341 OVOS2A0A0J9YW53 1432 aa10.14□□□□□ -0.79
DEPDC4-208ENST00000549341 OVOS2Q6IE36 1432 aa10.14□□□□□ -0.79
DEPDC4-208ENST00000549341 TULP4Q9NRJ4 1543 aa10.13□□□□□ -0.79
DEPDC4-208ENST00000549341 MYOM1P52179 1685 aa10.13□□□□□ -0.79
DEPDC4-208ENST00000549341 ZBTB7CA1YPR0 619 aa10.13□□□□□ -0.79
DEPDC4-208ENST00000549341 ZNF687Q8N1G0 1237 aa10.13□□□□□ -0.79
DEPDC4-208ENST00000549341 C14orf93Q9H972 538 aaKnown RBP10.13□□□□□ -0.79
DEPDC4-208ENST00000549341 RGPD8O14715 1765 aaPredicted RBP10.12□□□□□ -0.79
DEPDC4-208ENST00000549341 TRAK1Q9UPV9 953 aa10.12□□□□□ -0.79
DEPDC4-208ENST00000549341 GOLGB1Q14789 3259 aaKnown RBP10.11□□□□□ -0.79
DEPDC4-208ENST00000549341 EFCAB3Q8N7B9 438 aa10.11□□□□□ -0.79
DEPDC4-208ENST00000549341 SYT17Q9BSW7 474 aa10.11□□□□□ -0.79
DEPDC4-208ENST00000549341 STK32BQ9NY57 414 aa10.11□□□□□ -0.79
DEPDC4-208ENST00000549341 DLC1Q96QB1 1528 aa10.11□□□□□ -0.79
DEPDC4-208ENST00000549341 ATP7BP35670 1465 aa10.1□□□□□ -0.79
DEPDC4-208ENST00000549341 CRYBG1Q9Y4K1 1723 aa10.1□□□□□ -0.79
DEPDC4-208ENST00000549341 WASLO00401 505 aaPredicted RBP10.1□□□□□ -0.79
DEPDC4-208ENST00000549341 PTF1AQ7RTS3 328 aa10.1□□□□□ -0.79
DEPDC4-208ENST00000549341 IFNLR1Q8IU57 520 aaPredicted RBP10.1□□□□□ -0.79
DEPDC4-208ENST00000549341 PHRF1Q9P1Y6 1649 aaKnown RBP10.09□□□□□ -0.79
DEPDC4-208ENST00000549341 MPHOSPH9Q99550 1183 aa10.09□□□□□ -0.79
DEPDC4-208ENST00000549341 CASZ1Q86V15 1759 aa10.09□□□□□ -0.79
DEPDC4-208ENST00000549341 GPR162Q16538 588 aa10.08□□□□□ -0.8
DEPDC4-208ENST00000549341 MICALL2Q8IY33 904 aa10.08□□□□□ -0.8
DEPDC4-208ENST00000549341 COL5A2P05997 1499 aaPredicted RBP10.07□□□□□ -0.8
DEPDC4-208ENST00000549341 SOX12O15370 315 aa10.07□□□□□ -0.8
DEPDC4-208ENST00000549341 DDB1Q16531 1140 aa10.07□□□□□ -0.8
DEPDC4-208ENST00000549341 MTFR1LQ9H019 292 aa10.07□□□□□ -0.8
DEPDC4-208ENST00000549341 THRAP3Q9Y2W1 955 aaKnown RBP10.07□□□□□ -0.8
DEPDC4-208ENST00000549341 ADGRB1O14514 1584 aa10.06□□□□□ -0.8
DEPDC4-208ENST00000549341 CPDO75976 1380 aa10.06□□□□□ -0.8
DEPDC4-208ENST00000549341 C11orf95C9JLR9 678 aaPredicted RBP10.06□□□□□ -0.8
DEPDC4-208ENST00000549341 PLSCR1O15162 318 aa10.06□□□□□ -0.8
DEPDC4-208ENST00000549341 GPR153Q6NV75 609 aa10.06□□□□□ -0.8
DEPDC4-208ENST00000549341 ABTB2Q8N961 1025 aa10.06□□□□□ -0.8
DEPDC4-208ENST00000549341 NUDT16Q96DE0 195 aaKnown RBP10.06□□□□□ -0.8
DEPDC4-208ENST00000549341 ARXQ96QS3 562 aa10.06□□□□□ -0.8
DEPDC4-208ENST00000549341 CRB1P82279 1406 aa10.06□□□□□ -0.8
DEPDC4-208ENST00000549341 TONSLQ96HA7 1378 aa10.05□□□□□ -0.8
DEPDC4-208ENST00000549341 NEUROD1Q13562 356 aa10.05□□□□□ -0.8
DEPDC4-208ENST00000549341 SLC15A2Q16348 729 aa10.05□□□□□ -0.8
DEPDC4-208ENST00000549341 TXNRD1Q16881 649 aa10.05□□□□□ -0.8
DEPDC4-208ENST00000549341 USP19O94966 1318 aa10.05□□□□□ -0.8
DEPDC4-208ENST00000549341 LRRC37A3O60309 1634 aa10.04□□□□□ -0.8
DEPDC4-208ENST00000549341 TOM1L2Q6ZVM7 507 aa10.04□□□□□ -0.8
DEPDC4-208ENST00000549341 ACEP12821 1306 aa10.04□□□□□ -0.8
DEPDC4-208ENST00000549341 LMO7Q8WWI1 1683 aa10.03□□□□□ -0.8
DEPDC4-208ENST00000549341 TMEM92Q6UXU6 159 aa10.03□□□□□ -0.8
DEPDC4-208ENST00000549341 MARCH10Q8NA82 808 aaPredicted RBP10.03□□□□□ -0.8
DEPDC4-208ENST00000549341 PARP4Q9UKK3 1724 aaKnown RBP10.03□□□□□ -0.8
DEPDC4-208ENST00000549341 PEAK1Q9H792 1746 aa10.02□□□□□ -0.8
DEPDC4-208ENST00000549341 RGPD3A6NKT7 1758 aaPredicted RBP10.02□□□□□ -0.81
DEPDC4-208ENST00000549341 RGPD4Q7Z3J3 1758 aa10.02□□□□□ -0.81
DEPDC4-208ENST00000549341 GCP02774 474 aa10.02□□□□□ -0.81
DEPDC4-208ENST00000549341 POLR3AO14802 1390 aaPredicted RBP10.01□□□□□ -0.81
DEPDC4-208ENST00000549341 CSB-PGBD3P0DP91 1061 aa10.01□□□□□ -0.81
DEPDC4-208ENST00000549341 SIN3AQ96ST3 1273 aa10.01□□□□□ -0.81
DEPDC4-208ENST00000549341 CDK19Q9BWU1 502 aa10.01□□□□□ -0.81
DEPDC4-208ENST00000549341 KDM2AQ9Y2K7 1162 aa10.01□□□□□ -0.81
DEPDC4-208ENST00000549341 MAP3K5Q99683 1374 aa10.01□□□□□ -0.81
DEPDC4-208ENST00000549341 NLRP13Q86W25 1043 aa10□□□□□ -0.81
DEPDC4-208ENST00000549341 ZNF316A6NFI3 1004 aaPredicted RBP9.99□□□□□ -0.81
DEPDC4-208ENST00000549341 ZNF827Q17R98 1081 aa9.99□□□□□ -0.81
DEPDC4-208ENST00000549341 ANKRD13DQ6ZTN6 518 aa9.99□□□□□ -0.81
DEPDC4-208ENST00000549341 ACSBG1Q96GR2 724 aa9.99□□□□□ -0.81
DEPDC4-208ENST00000549341 ATP10DQ9P241 1426 aa9.99□□□□□ -0.81
DEPDC4-208ENST00000549341 POLD1P28340 1107 aa9.98□□□□□ -0.81
DEPDC4-208ENST00000549341 NLGN2Q8NFZ4 835 aa9.98□□□□□ -0.81
DEPDC4-208ENST00000549341 ZNF526Q8TF50 670 aaPredicted RBP9.98□□□□□ -0.81
DEPDC4-208ENST00000549341 WDR17Q8IZU2 1322 aa9.98□□□□□ -0.81
DEPDC4-208ENST00000549341 ITSN1Q15811 1721 aa9.98□□□□□ -0.81
DEPDC4-208ENST00000549341 AATKQ6ZMQ8 1374 aa9.98□□□□□ -0.81
DEPDC4-208ENST00000549341 SHANK3Q9BYB0 1731 aa9.97□□□□□ -0.81
DEPDC4-208ENST00000549341 NLRP6P59044 892 aa9.97□□□□□ -0.81
DEPDC4-208ENST00000549341 SRPK2P78362 688 aaKnown RBP9.97□□□□□ -0.81
DEPDC4-208ENST00000549341 ARSIQ5FYB1 569 aa9.97□□□□□ -0.81
DEPDC4-208ENST00000549341 DCAF11Q8TEB1 546 aa9.97□□□□□ -0.81
DEPDC4-208ENST00000549341 CDCA7Q9BWT1 371 aaPredicted RBP9.97□□□□□ -0.81
DEPDC4-208ENST00000549341 BCL9O00512 1426 aa9.97□□□□□ -0.81
DEPDC4-208ENST00000549341 TNS2Q63HR2 1409 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms