RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 NFE2L2Q16236 605 aa21.1■□□□□ 0.97
PRPF40A-212ENST00000545856 BARGINQ6ZT62 677 aa21.1■□□□□ 0.97
PRPF40A-212ENST00000545856 MEGF6O75095 1541 aa21.09■□□□□ 0.97
PRPF40A-212ENST00000545856 AFF2P51816 1311 aa21.09■□□□□ 0.97
PRPF40A-212ENST00000545856 HTATSF1O43719 755 aaKnown RBP21.09■□□□□ 0.97
PRPF40A-212ENST00000545856 HNRNPUQ00839 825 aaKnown RBP eCLIP21.09■□□□□ 0.97
PRPF40A-212ENST00000545856 TRPC5Q9UL62 973 aaPredicted RBP21.09■□□□□ 0.97
PRPF40A-212ENST00000545856 APAF1O14727 1248 aa21.08■□□□□ 0.96
PRPF40A-212ENST00000545856 ZNF772Q68DY9 489 aaPredicted RBP21.08■□□□□ 0.96
PRPF40A-212ENST00000545856 CCDC146Q8IYE0 955 aa21.08■□□□□ 0.96
PRPF40A-212ENST00000545856 PHF23Q9BUL5 403 aaPredicted RBP21.08■□□□□ 0.96
PRPF40A-212ENST00000545856 SPG7Q9UQ90 795 aa21.08■□□□□ 0.96
PRPF40A-212ENST00000545856 VIRMAQ69YN4 1812 aaKnown RBP21.07■□□□□ 0.96
PRPF40A-212ENST00000545856 ADAMTS7Q9UKP4 1686 aa21.07■□□□□ 0.96
PRPF40A-212ENST00000545856 TMPOP42166 694 aaKnown RBP21.07■□□□□ 0.96
PRPF40A-212ENST00000545856 USHBP1Q8N6Y0 703 aa21.07■□□□□ 0.96
PRPF40A-212ENST00000545856 SHANK3Q9BYB0 1731 aa21.06■□□□□ 0.96
PRPF40A-212ENST00000545856 THSD7AQ9UPZ6 1657 aa21.06■□□□□ 0.96
PRPF40A-212ENST00000545856 CALD1Q05682 793 aaKnown RBP21.05■□□□□ 0.96
PRPF40A-212ENST00000545856 PDE3BQ13370 1112 aa21.05■□□□□ 0.96
PRPF40A-212ENST00000545856 PHACTR3Q96KR7 559 aa21.05■□□□□ 0.96
PRPF40A-212ENST00000545856 TNS2Q63HR2 1409 aa21.05■□□□□ 0.96
PRPF40A-212ENST00000545856 GLI3P10071 1580 aa21.04■□□□□ 0.96
PRPF40A-212ENST00000545856 PCDH11XQ9BZA7 1347 aa21.04■□□□□ 0.96
PRPF40A-212ENST00000545856 PCDH11YQ9BZA8 1340 aa21.04■□□□□ 0.96
PRPF40A-212ENST00000545856 LRRC37A3O60309 1634 aa21.03■□□□□ 0.96
PRPF40A-212ENST00000545856 MAP3K5Q99683 1374 aa21.03■□□□□ 0.96
PRPF40A-212ENST00000545856 SCN11AQ9UI33 1791 aa21.03■□□□□ 0.96
PRPF40A-212ENST00000545856 HSP90AB1P08238 724 aaKnown RBP21.02■□□□□ 0.96
PRPF40A-212ENST00000545856 MTHFSDQ2M296 383 aaKnown RBP21.02■□□□□ 0.96
PRPF40A-212ENST00000545856 AKAP4Q5JQC9 854 aa21.02■□□□□ 0.96
PRPF40A-212ENST00000545856 IL16Q14005 1332 aa21.01■□□□□ 0.95
PRPF40A-212ENST00000545856 ZNF521Q96K83 1311 aa21.01■□□□□ 0.95
PRPF40A-212ENST00000545856 RIPK4P57078 832 aa21.01■□□□□ 0.95
PRPF40A-212ENST00000545856 WDR63Q8IWG1 891 aa21.01■□□□□ 0.95
PRPF40A-212ENST00000545856 C1orf141Q5JVX7 400 aa21■□□□□ 0.95
PRPF40A-212ENST00000545856 GJD4Q96KN9 370 aaPredicted RBP21■□□□□ 0.95
PRPF40A-212ENST00000545856 CCDC9Q9Y3X0 531 aaKnown RBP21■□□□□ 0.95
PRPF40A-212ENST00000545856 GNAT3A8MTJ3 354 aa20.99■□□□□ 0.95
PRPF40A-212ENST00000545856 IFNL2Q8IZJ0 200 aa20.99■□□□□ 0.95
PRPF40A-212ENST00000545856 ZCRB1Q8TBF4 217 aaKnown RBP20.99■□□□□ 0.95
PRPF40A-212ENST00000545856 RTF1Q92541 710 aaKnown RBP20.99■□□□□ 0.95
PRPF40A-212ENST00000545856 ONECUT3O60422 494 aaPredicted RBP20.98■□□□□ 0.95
PRPF40A-212ENST00000545856 ZNF530Q6P9A1 599 aaPredicted RBP20.98■□□□□ 0.95
PRPF40A-212ENST00000545856 WWC1Q8IX03 1113 aa20.97■□□□□ 0.95
PRPF40A-212ENST00000545856 USP35Q9P2H5 1018 aa20.97■□□□□ 0.95
PRPF40A-212ENST00000545856 CEMIPQ8WUJ3 1361 aa20.96■□□□□ 0.95
PRPF40A-212ENST00000545856 SIPA1L3O60292 1781 aaPredicted RBP20.96■□□□□ 0.95
PRPF40A-212ENST00000545856 EXOC5O00471 708 aa20.96■□□□□ 0.95
PRPF40A-212ENST00000545856 NKX1-1Q15270 411 aaPredicted RBP20.96■□□□□ 0.95
PRPF40A-212ENST00000545856 YTHDC1Q96MU7 727 aaKnown RBP20.96■□□□□ 0.95
PRPF40A-212ENST00000545856 TRIM35Q9UPQ4 493 aa20.96■□□□□ 0.95
PRPF40A-212ENST00000545856 MRC1P22897 1456 aa20.95■□□□□ 0.94
PRPF40A-212ENST00000545856 PHKG2P15735 406 aa20.95■□□□□ 0.94
PRPF40A-212ENST00000545856 DDB1Q16531 1140 aa20.95■□□□□ 0.94
PRPF40A-212ENST00000545856 QTRT2Q9H974 415 aaKnown RBP20.95■□□□□ 0.94
PRPF40A-212ENST00000545856 BABAM1Q9NWV8 329 aa20.95■□□□□ 0.94
PRPF40A-212ENST00000545856 RBM6P78332 1123 aaKnown RBP20.94■□□□□ 0.94
PRPF40A-212ENST00000545856 GOLGA2Q08379 1002 aa20.94■□□□□ 0.94
PRPF40A-212ENST00000545856 DCAF5Q96JK2 942 aa20.94■□□□□ 0.94
PRPF40A-212ENST00000545856 NEUROD2Q15784 382 aa20.93■□□□□ 0.94
PRPF40A-212ENST00000545856 RRP7AQ9Y3A4 280 aaKnown RBP20.93■□□□□ 0.94
PRPF40A-212ENST00000545856 BCL9O00512 1426 aa20.92■□□□□ 0.94
PRPF40A-212ENST00000545856 E9PSI1 815 aa20.92■□□□□ 0.94
PRPF40A-212ENST00000545856 CYP27B1O15528 508 aa20.91■□□□□ 0.94
PRPF40A-212ENST00000545856 FAM98CQ17RN3 349 aaKnown RBP20.9■□□□□ 0.94
PRPF40A-212ENST00000545856 ILDR1Q86SU0 546 aaPredicted RBP20.9■□□□□ 0.94
PRPF40A-212ENST00000545856 IFT57Q9NWB7 429 aa20.9■□□□□ 0.94
PRPF40A-212ENST00000545856 GNAI1P63096 354 aa20.89■□□□□ 0.93
PRPF40A-212ENST00000545856 MYH16Q9H6N6 1097 aa20.89■□□□□ 0.93
PRPF40A-212ENST00000545856 KDM6AO15550 1401 aaPredicted RBP20.88■□□□□ 0.93
PRPF40A-212ENST00000545856 ERVV-2B6SEH9 535 aa20.88■□□□□ 0.93
PRPF40A-212ENST00000545856 CFAP44Q96MT7 982 aa20.88■□□□□ 0.93
PRPF40A-212ENST00000545856 KDM3BQ7LBC6 1761 aa20.88■□□□□ 0.93
PRPF40A-212ENST00000545856 TOGARAM1Q9Y4F4 1720 aa20.87■□□□□ 0.93
PRPF40A-212ENST00000545856 ITGB4P16144 1822 aa20.87■□□□□ 0.93
PRPF40A-212ENST00000545856 RNMTO43148 476 aaKnown RBP20.86■□□□□ 0.93
PRPF40A-212ENST00000545856 CENPBP07199 599 aaPredicted RBP20.86■□□□□ 0.93
PRPF40A-212ENST00000545856 DOT1LQ8TEK3 1739 aa20.86■□□□□ 0.93
PRPF40A-212ENST00000545856 ZNF853P0CG23 659 aa20.85■□□□□ 0.93
PRPF40A-212ENST00000545856 SLFN5Q08AF3 891 aa20.85■□□□□ 0.93
PRPF40A-212ENST00000545856 TEFQ10587 303 aa20.85■□□□□ 0.93
PRPF40A-212ENST00000545856 TRMT2AQ8IZ69 625 aaKnown RBP20.85■□□□□ 0.93
PRPF40A-212ENST00000545856 IL17REQ8NFR9 667 aa20.85■□□□□ 0.93
PRPF40A-212ENST00000545856 SALL2Q9Y467 1007 aaPredicted RBP20.85■□□□□ 0.93
PRPF40A-212ENST00000545856 BRWD3Q6RI45 1802 aa20.85■□□□□ 0.93
PRPF40A-212ENST00000545856 RXRBP28702 533 aa20.85■□□□□ 0.93
PRPF40A-212ENST00000545856 PAPPAQ13219 1627 aa20.84■□□□□ 0.93
PRPF40A-212ENST00000545856 TAF7Q15545 349 aaPredicted RBP20.84■□□□□ 0.93
PRPF40A-212ENST00000545856 MCM10Q7L590 875 aa20.84■□□□□ 0.93
PRPF40A-212ENST00000545856 CT47B1P0C2W7 299 aaPredicted RBP20.83■□□□□ 0.92
PRPF40A-212ENST00000545856 MPRIPQ6WCQ1 1025 aa20.83■□□□□ 0.92
PRPF40A-212ENST00000545856 DDX54Q8TDD1 881 aaKnown RBP20.83■□□□□ 0.92
PRPF40A-212ENST00000545856 SLC52A2Q9HAB3 445 aa20.83■□□□□ 0.92
PRPF40A-212ENST00000545856 SOS1Q07889 1333 aaPredicted RBP20.83■□□□□ 0.92
PRPF40A-212ENST00000545856 CHL1O00533 1208 aa20.82■□□□□ 0.92
PRPF40A-212ENST00000545856 SEPT12Q8IYM1 358 aa20.82■□□□□ 0.92
PRPF40A-212ENST00000545856 NHSQ6T4R5 1651 aa20.82■□□□□ 0.92
PRPF40A-212ENST00000545856 SBF2Q86WG5 1849 aa20.81■□□□□ 0.92
PRPF40A-212ENST00000545856 UBR2Q8IWV8 1755 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms