RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 DUOX2Q9NRD8 1548 aa14.83□□□□□ -0.04
COL4A6-209ENST00000545689 TCOF1Q13428 1488 aaKnown RBP14.83□□□□□ -0.04
COL4A6-209ENST00000545689 MX1P20591 662 aa14.83□□□□□ -0.04
COL4A6-209ENST00000545689 DUSP27Q5VZP5 1158 aa14.83□□□□□ -0.04
COL4A6-209ENST00000545689 GLRX3O76003 335 aaKnown RBP14.83□□□□□ -0.04
COL4A6-209ENST00000545689 PDE4CQ08493 712 aa14.83□□□□□ -0.04
COL4A6-209ENST00000545689 MEX3CQ5U5Q3 659 aaKnown RBP14.83□□□□□ -0.04
COL4A6-209ENST00000545689 CCDC57Q2TAC2 916 aa14.82□□□□□ -0.04
COL4A6-209ENST00000545689 CTTNBP2Q8WZ74 1663 aa14.82□□□□□ -0.04
COL4A6-209ENST00000545689 FYB1O15117 783 aa14.82□□□□□ -0.04
COL4A6-209ENST00000545689 NAP1L1P55209 391 aaKnown RBP14.82□□□□□ -0.04
COL4A6-209ENST00000545689 JAKMIP1Q96N16 626 aaKnown RBP14.82□□□□□ -0.04
COL4A6-209ENST00000545689 CFAP43Q8NDM7 1665 aa14.82□□□□□ -0.04
COL4A6-209ENST00000545689 TTC21BQ7Z4L5 1316 aa14.82□□□□□ -0.04
COL4A6-209ENST00000545689 TXLNBQ8N3L3 684 aa14.82□□□□□ -0.04
COL4A6-209ENST00000545689 SPATA32Q96LK8 384 aa14.82□□□□□ -0.04
COL4A6-209ENST00000545689 RBM42Q9BTD8 480 aaKnown RBP14.82□□□□□ -0.04
COL4A6-209ENST00000545689 MYO6Q9UM54 1294 aa14.82□□□□□ -0.04
COL4A6-209ENST00000545689 CCDC69A6NI79 296 aa14.81□□□□□ -0.04
COL4A6-209ENST00000545689 WASF1Q92558 559 aa14.81□□□□□ -0.04
COL4A6-209ENST00000545689 AMOTQ4VCS5 1084 aa14.81□□□□□ -0.04
COL4A6-209ENST00000545689 C14orf93Q9H972 538 aaKnown RBP14.81□□□□□ -0.04
COL4A6-209ENST00000545689 NUP62CLQ9H1M0 184 aa14.81□□□□□ -0.04
COL4A6-209ENST00000545689 NOL7Q9UMY1 257 aaKnown RBP14.81□□□□□ -0.04
COL4A6-209ENST00000545689 ASXL1Q8IXJ9 1541 aa14.81□□□□□ -0.04
COL4A6-209ENST00000545689 CWC15Q9P013 229 aaKnown RBP14.8□□□□□ -0.04
COL4A6-209ENST00000545689 DISP3Q9P2K9 1392 aa14.8□□□□□ -0.04
COL4A6-209ENST00000545689 CAGE1Q8TC20 777 aa14.8□□□□□ -0.04
COL4A6-209ENST00000545689 SH2B1Q9NRF2 756 aaPredicted RBP14.8□□□□□ -0.04
COL4A6-209ENST00000545689 NOS1P29475 1434 aa14.8□□□□□ -0.04
COL4A6-209ENST00000545689 ME1P48163 572 aa14.8□□□□□ -0.04
COL4A6-209ENST00000545689 CDK5RAP3Q96JB5 506 aa14.8□□□□□ -0.04
COL4A6-209ENST00000545689 OFD1O75665 1012 aa14.8□□□□□ -0.04
COL4A6-209ENST00000545689 ADGRF5Q8IZF2 1346 aa14.8□□□□□ -0.04
COL4A6-209ENST00000545689 CEP57L1Q8IYX8 460 aa14.8□□□□□ -0.04
COL4A6-209ENST00000545689 SIL1Q9H173 461 aa14.8□□□□□ -0.04
COL4A6-209ENST00000545689 FANCAO15360 1455 aa14.8□□□□□ -0.04
COL4A6-209ENST00000545689 CEP126Q9P2H0 1117 aa14.79□□□□□ -0.04
COL4A6-209ENST00000545689 STIM1Q13586 685 aa14.79□□□□□ -0.04
COL4A6-209ENST00000545689 TAF7Q15545 349 aaPredicted RBP14.79□□□□□ -0.04
COL4A6-209ENST00000545689 NCBP3Q53F19 620 aaKnown RBP14.79□□□□□ -0.04
COL4A6-209ENST00000545689 CWC27Q6UX04 472 aaKnown RBP14.79□□□□□ -0.04
COL4A6-209ENST00000545689 SERPINC1P01008 464 aa14.78□□□□□ -0.04
COL4A6-209ENST00000545689 TOM1L2Q6ZVM7 507 aa14.78□□□□□ -0.04
COL4A6-209ENST00000545689 WASLO00401 505 aaPredicted RBP14.78□□□□□ -0.04
COL4A6-209ENST00000545689 C20orf194Q5TEA3 1177 aa14.78□□□□□ -0.04
COL4A6-209ENST00000545689 LARP1Q6PKG0 1096 aaKnown RBP14.78□□□□□ -0.04
COL4A6-209ENST00000545689 ZNHIT6Q9NWK9 470 aaKnown RBP14.78□□□□□ -0.04
COL4A6-209ENST00000545689 SMTNL1A8MU46 457 aa14.78□□□□□ -0.04
COL4A6-209ENST00000545689 MAP4K4O95819 1239 aaPredicted RBP14.78□□□□□ -0.04
COL4A6-209ENST00000545689 STK3Q13188 491 aa14.78□□□□□ -0.04
COL4A6-209ENST00000545689 DENND4BO75064 1496 aaPredicted RBP14.77□□□□□ -0.04
COL4A6-209ENST00000545689 RRP12Q5JTH9 1297 aaKnown RBP14.77□□□□□ -0.04
COL4A6-209ENST00000545689 AKAP2Q9Y2D5 859 aa14.77□□□□□ -0.04
COL4A6-209ENST00000545689 LUC7LQ9NQ29 371 aaKnown RBP14.77□□□□□ -0.05
COL4A6-209ENST00000545689 CCDC66A2RUB6 948 aa14.77□□□□□ -0.05
COL4A6-209ENST00000545689 MYL6BP14649 208 aa14.77□□□□□ -0.05
COL4A6-209ENST00000545689 PPFIBP1Q86W92 1011 aa14.77□□□□□ -0.05
COL4A6-209ENST00000545689 BMP2KLQ5H9B9 411 aa14.77□□□□□ -0.05
COL4A6-209ENST00000545689 ESPNB1AK53 854 aa14.76□□□□□ -0.05
COL4A6-209ENST00000545689 IL1RAPL2Q9NP60 686 aa14.76□□□□□ -0.05
COL4A6-209ENST00000545689 KDM5BQ9UGL1 1544 aa14.76□□□□□ -0.05
COL4A6-209ENST00000545689 HMGB1P09429 215 aaKnown RBP14.76□□□□□ -0.05
COL4A6-209ENST00000545689 IMMTQ16891 758 aaKnown RBP14.76□□□□□ -0.05
COL4A6-209ENST00000545689 CASTP20810 708 aaKnown RBP14.76□□□□□ -0.05
COL4A6-209ENST00000545689 CT47A1Q5JQC4 288 aaPredicted RBP14.76□□□□□ -0.05
COL4A6-209ENST00000545689 CCDC112Q8NEF3 446 aa14.76□□□□□ -0.05
COL4A6-209ENST00000545689 ARHGAP45Q92619 1136 aa14.76□□□□□ -0.05
COL4A6-209ENST00000545689 HMGB2P26583 209 aaKnown RBP14.76□□□□□ -0.05
COL4A6-209ENST00000545689 MAP3K11Q16584 847 aa14.76□□□□□ -0.05
COL4A6-209ENST00000545689 CCAR1Q8IX12 1150 aaKnown RBP14.76□□□□□ -0.05
COL4A6-209ENST00000545689 CEBPZQ03701 1054 aaKnown RBP14.76□□□□□ -0.05
COL4A6-209ENST00000545689 SLC26A8Q96RN1 970 aa14.76□□□□□ -0.05
COL4A6-209ENST00000545689 MPHOSPH8Q99549 860 aa14.75□□□□□ -0.05
COL4A6-209ENST00000545689 ARHGEF12Q9NZN5 1544 aa14.75□□□□□ -0.05
COL4A6-209ENST00000545689 TRIM27P14373 513 aa14.75□□□□□ -0.05
COL4A6-209ENST00000545689 RDXP35241 583 aaKnown RBP14.75□□□□□ -0.05
COL4A6-209ENST00000545689 SPC24Q8NBT2 197 aa14.75□□□□□ -0.05
COL4A6-209ENST00000545689 CEP131Q9UPN4 1083 aa14.75□□□□□ -0.05
COL4A6-209ENST00000545689 UNC13AQ9UPW8 1703 aa14.75□□□□□ -0.05
COL4A6-209ENST00000545689 SHANK2Q9UPX8 1470 aa14.75□□□□□ -0.05
COL4A6-209ENST00000545689 ZSCAN30Q86W11 494 aa14.75□□□□□ -0.05
COL4A6-209ENST00000545689 U3KPZ7 1027 aaPredicted RBP14.75□□□□□ -0.05
COL4A6-209ENST00000545689 MCM10Q7L590 875 aa14.75□□□□□ -0.05
COL4A6-209ENST00000545689 FMNL2Q96PY5 1086 aa14.75□□□□□ -0.05
COL4A6-209ENST00000545689 SCAND2PQ9GZW5 306 aaPredicted RBP14.75□□□□□ -0.05
COL4A6-209ENST00000545689 PRAG1Q86YV5 1406 aa14.75□□□□□ -0.05
COL4A6-209ENST00000545689 EXOC6BQ9Y2D4 811 aa14.74□□□□□ -0.05
COL4A6-209ENST00000545689 CCDC183Q5T5S1 534 aa14.74□□□□□ -0.05
COL4A6-209ENST00000545689 PARD3Q8TEW0 1356 aa14.74□□□□□ -0.05
COL4A6-209ENST00000545689 HDAC1Q13547 482 aaPredicted RBP14.74□□□□□ -0.05
COL4A6-209ENST00000545689 NUTM1Q86Y26 1132 aa14.74□□□□□ -0.05
COL4A6-209ENST00000545689 STRN4Q9NRL3 753 aa14.74□□□□□ -0.05
COL4A6-209ENST00000545689 KIF2AO00139 706 aaPredicted RBP14.74□□□□□ -0.05
COL4A6-209ENST00000545689 PUS7Q96PZ0 661 aaKnown RBP14.74□□□□□ -0.05
COL4A6-209ENST00000545689 ATP2B1P20020 1258 aa14.73□□□□□ -0.05
COL4A6-209ENST00000545689 PLCH2O75038 1416 aa14.73□□□□□ -0.05
COL4A6-209ENST00000545689 DCTN1Q14203 1278 aa14.73□□□□□ -0.05
COL4A6-209ENST00000545689 NME9Q86XW9 330 aa14.73□□□□□ -0.05
COL4A6-209ENST00000545689 HYPKQ9NX55 129 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms