RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	CDK19	Q9BWU1	502 aa		10.97	□□□□□ -0.65
SNHG1-223	ENST00000545440	SBNO2	Q9Y2G9	1366 aa		10.97	□□□□□ -0.65
SNHG1-223	ENST00000545440	PPIP5K1	Q6PFW1	1433 aa		10.97	□□□□□ -0.65
SNHG1-223	ENST00000545440	PIK3C2A	O00443	1686 aa		10.97	□□□□□ -0.65
SNHG1-223	ENST00000545440	USP54	Q70EL1	1684 aa		10.97	□□□□□ -0.65
SNHG1-223	ENST00000545440	NGDN	Q8NEJ9	315 aa	Known RBP	10.96	□□□□□ -0.65
SNHG1-223	ENST00000545440	QTRT2	Q9H974	415 aa	Known RBP	10.96	□□□□□ -0.65
SNHG1-223	ENST00000545440	POTEF	A5A3E0	1075 aa		10.95	□□□□□ -0.66
SNHG1-223	ENST00000545440	GPIHBP1	Q8IV16	184 aa		10.95	□□□□□ -0.66
SNHG1-223	ENST00000545440	LMO7	Q8WWI1	1683 aa		10.95	□□□□□ -0.66
SNHG1-223	ENST00000545440	BRD4	O60885	1362 aa	Predicted RBP	10.94	□□□□□ -0.66
SNHG1-223	ENST00000545440	PLEKHG3	A1L390	1219 aa		10.94	□□□□□ -0.66
SNHG1-223	ENST00000545440	SRPK2	P78362	688 aa	Known RBP	10.94	□□□□□ -0.66
SNHG1-223	ENST00000545440	NBPF8	Q3BBV2	869 aa		10.94	□□□□□ -0.66
SNHG1-223	ENST00000545440	ZC3H15	Q8WU90	426 aa	Known RBP	10.94	□□□□□ -0.66
SNHG1-223	ENST00000545440	WNK3	Q9BYP7	1800 aa		10.93	□□□□□ -0.66
SNHG1-223	ENST00000545440	ACE	P12821	1306 aa		10.93	□□□□□ -0.66
SNHG1-223	ENST00000545440	EVC2	Q86UK5	1308 aa		10.93	□□□□□ -0.66
SNHG1-223	ENST00000545440	TMEM92	Q6UXU6	159 aa		10.93	□□□□□ -0.66
SNHG1-223	ENST00000545440	MAMSTR	Q6ZN01	415 aa		10.93	□□□□□ -0.66
SNHG1-223	ENST00000545440	UNC5CL	Q8IV45	518 aa		10.93	□□□□□ -0.66
SNHG1-223	ENST00000545440	CABLES1	Q8TDN4	633 aa		10.93	□□□□□ -0.66
SNHG1-223	ENST00000545440	OXER1	Q8TDS5	423 aa		10.93	□□□□□ -0.66
SNHG1-223	ENST00000545440	USP6	P35125	1406 aa		10.92	□□□□□ -0.66
SNHG1-223	ENST00000545440	THSD7A	Q9UPZ6	1657 aa		10.92	□□□□□ -0.66
SNHG1-223	ENST00000545440	GRXCR2	A6NFK2	248 aa		10.92	□□□□□ -0.66
SNHG1-223	ENST00000545440	MLLT3	P42568	568 aa	Predicted RBP	10.92	□□□□□ -0.66
SNHG1-223	ENST00000545440	SCUBE2	Q9NQ36	999 aa		10.92	□□□□□ -0.66
SNHG1-223	ENST00000545440	SLIT3	O75094	1523 aa		10.92	□□□□□ -0.66
SNHG1-223	ENST00000545440	RGPD5	Q99666	1765 aa		10.92	□□□□□ -0.66
SNHG1-223	ENST00000545440	ATAD2	Q6PL18	1390 aa		10.91	□□□□□ -0.66
SNHG1-223	ENST00000545440	LTN1	O94822	1766 aa		10.91	□□□□□ -0.66
SNHG1-223	ENST00000545440	EP400	Q96L91	3159 aa		10.91	□□□□□ -0.66
SNHG1-223	ENST00000545440	RIMBP2	O15034	1052 aa		10.9	□□□□□ -0.66
SNHG1-223	ENST00000545440	EVI5	O60447	810 aa		10.9	□□□□□ -0.66
SNHG1-223	ENST00000545440	KRI1	Q8N9T8	703 aa	Known RBP	10.9	□□□□□ -0.66
SNHG1-223	ENST00000545440	GJD4	Q96KN9	370 aa	Predicted RBP	10.9	□□□□□ -0.66
SNHG1-223	ENST00000545440	CARD11	Q9BXL7	1154 aa		10.9	□□□□□ -0.66
SNHG1-223	ENST00000545440	SSH2	Q76I76	1423 aa		10.9	□□□□□ -0.66
SNHG1-223	ENST00000545440	COL18A1	P39060	1754 aa		10.9	□□□□□ -0.67
SNHG1-223	ENST00000545440	USP19	O94966	1318 aa		10.89	□□□□□ -0.67
SNHG1-223	ENST00000545440	CLSPN	Q9HAW4	1339 aa		10.89	□□□□□ -0.67
SNHG1-223	ENST00000545440	SLC34A2	O95436	690 aa		10.89	□□□□□ -0.67
SNHG1-223	ENST00000545440	VPS72	Q15906	364 aa		10.89	□□□□□ -0.67
SNHG1-223	ENST00000545440	PTCD2	Q8WV60	388 aa	Known RBP	10.89	□□□□□ -0.67
SNHG1-223	ENST00000545440	RGPD1	P0DJD0	1748 aa		10.89	□□□□□ -0.67
SNHG1-223	ENST00000545440	FAM83G	A6ND36	823 aa		10.88	□□□□□ -0.67
SNHG1-223	ENST00000545440	CPSF1	Q10570	1443 aa	Known RBP	10.88	□□□□□ -0.67
SNHG1-223	ENST00000545440	RBM26	Q5T8P6	1007 aa	Known RBP	10.88	□□□□□ -0.67
SNHG1-223	ENST00000545440	CPD	O75976	1380 aa		10.88	□□□□□ -0.67
SNHG1-223	ENST00000545440	KIAA0232	Q92628	1395 aa		10.88	□□□□□ -0.67
SNHG1-223	ENST00000545440	PARP4	Q9UKK3	1724 aa	Known RBP	10.87	□□□□□ -0.67
SNHG1-223	ENST00000545440	PRDM11	Q9NQV5	511 aa		10.87	□□□□□ -0.67
SNHG1-223	ENST00000545440	ABCC6	O95255	1503 aa		10.87	□□□□□ -0.67
SNHG1-223	ENST00000545440	CD163L1	Q9NR16	1453 aa		10.87	□□□□□ -0.67
SNHG1-223	ENST00000545440	KIF20B	Q96Q89	1820 aa		10.86	□□□□□ -0.67
SNHG1-223	ENST00000545440	MYOM1	P52179	1685 aa		10.86	□□□□□ -0.67
SNHG1-223	ENST00000545440	CAMTA1	Q9Y6Y1	1673 aa		10.86	□□□□□ -0.67
SNHG1-223	ENST00000545440	DOK7	Q18PE1	504 aa		10.86	□□□□□ -0.67
SNHG1-223	ENST00000545440	ABTB2	Q8N961	1025 aa		10.86	□□□□□ -0.67
SNHG1-223	ENST00000545440	BTG4	Q9NY30	223 aa		10.86	□□□□□ -0.67
SNHG1-223	ENST00000545440	CABP1	Q9NZU7	370 aa		10.86	□□□□□ -0.67
SNHG1-223	ENST00000545440	TNS1	Q9HBL0	1735 aa	Known RBP	10.86	□□□□□ -0.67
SNHG1-223	ENST00000545440	NFAT5	O94916	1531 aa		10.85	□□□□□ -0.67
SNHG1-223	ENST00000545440	PTGER2	P43116	358 aa		10.85	□□□□□ -0.67
SNHG1-223	ENST00000545440	ZMYND10	O75800	440 aa		10.84	□□□□□ -0.67
SNHG1-223	ENST00000545440	NUTM2G	Q5VZR2	741 aa		10.84	□□□□□ -0.67
SNHG1-223	ENST00000545440	NLRP13	Q86W25	1043 aa		10.84	□□□□□ -0.67
SNHG1-223	ENST00000545440	DDX12P	Q92771	950 aa		10.84	□□□□□ -0.67
SNHG1-223	ENST00000545440	NINL	Q9Y2I6	1382 aa		10.84	□□□□□ -0.67
SNHG1-223	ENST00000545440	COL5A2	P05997	1499 aa	Predicted RBP	10.84	□□□□□ -0.67
SNHG1-223	ENST00000545440	FAM208A	Q9UK61	1670 aa	Known RBP	10.84	□□□□□ -0.67
SNHG1-223	ENST00000545440	TTC21A	Q8NDW8	1320 aa		10.84	□□□□□ -0.67
SNHG1-223	ENST00000545440	KTN1	Q86UP2	1357 aa	Known RBP	10.83	□□□□□ -0.68
SNHG1-223	ENST00000545440	USP47	Q96K76	1375 aa		10.83	□□□□□ -0.68
SNHG1-223	ENST00000545440	ONECUT3	O60422	494 aa	Predicted RBP	10.83	□□□□□ -0.68
SNHG1-223	ENST00000545440	SLAIN1	Q8ND83	568 aa		10.83	□□□□□ -0.68
SNHG1-223	ENST00000545440	TIMELESS	Q9UNS1	1208 aa		10.83	□□□□□ -0.68
SNHG1-223	ENST00000545440	CCDC9	Q9Y3X0	531 aa	Known RBP	10.83	□□□□□ -0.68
SNHG1-223	ENST00000545440	SBF2	Q86WG5	1849 aa		10.83	□□□□□ -0.68
SNHG1-223	ENST00000545440	LRRC37A3	O60309	1634 aa		10.83	□□□□□ -0.68
SNHG1-223	ENST00000545440	SPATA31A5	Q5VU36	1347 aa		10.83	□□□□□ -0.68
SNHG1-223	ENST00000545440	SPATA31A7	Q8IWB4	1347 aa		10.83	□□□□□ -0.68
SNHG1-223	ENST00000545440	PUS7	Q96PZ0	661 aa	Known RBP	10.82	□□□□□ -0.68
SNHG1-223	ENST00000545440	EDC4	Q6P2E9	1401 aa	Known RBP	10.82	□□□□□ -0.68
SNHG1-223	ENST00000545440	TTC21B	Q7Z4L5	1316 aa		10.82	□□□□□ -0.68
SNHG1-223	ENST00000545440	GC	P02774	474 aa		10.81	□□□□□ -0.68
SNHG1-223	ENST00000545440	ZC3H6	P61129	1189 aa	Known RBP	10.81	□□□□□ -0.68
SNHG1-223	ENST00000545440	CHRNA2	Q15822	529 aa		10.81	□□□□□ -0.68
SNHG1-223	ENST00000545440	BARGIN	Q6ZT62	677 aa		10.81	□□□□□ -0.68
SNHG1-223	ENST00000545440	SEPT12	Q8IYM1	358 aa		10.81	□□□□□ -0.68
SNHG1-223	ENST00000545440	ZNF710	Q8N1W2	664 aa		10.81	□□□□□ -0.68
SNHG1-223	ENST00000545440	TESK2	Q96S53	571 aa		10.81	□□□□□ -0.68
SNHG1-223	ENST00000545440	BLM	P54132	1417 aa	Predicted RBP	10.81	□□□□□ -0.68
SNHG1-223	ENST00000545440		A0A1W2PP64	1363 aa		10.8	□□□□□ -0.68
SNHG1-223	ENST00000545440	AATK	Q6ZMQ8	1374 aa		10.8	□□□□□ -0.68
SNHG1-223	ENST00000545440	CCDC125	Q86Z20	511 aa		10.8	□□□□□ -0.68
SNHG1-223	ENST00000545440	EPAS1	Q99814	870 aa		10.8	□□□□□ -0.68
SNHG1-223	ENST00000545440	PCGF6	Q9BYE7	350 aa		10.8	□□□□□ -0.68
SNHG1-223	ENST00000545440	SLC24A3	Q9HC58	644 aa		10.8	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms