RNA–Protein interactions for RNA: ENST00000545215.5

LDHA-223, Transcript of lactate dehydrogenase A, human

TSL 1 (best)

Gene LDHA, Length 1,340 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDHA-223	ENST00000545215	TCP11L2	Q8N4U5	519 aa		10.55	□□□□□ -0.72
LDHA-223	ENST00000545215	PRDM11	Q9NQV5	511 aa		10.55	□□□□□ -0.72
LDHA-223	ENST00000545215	IQGAP3	Q86VI3	1631 aa		10.53	□□□□□ -0.72
LDHA-223	ENST00000545215	NAIP	Q13075	1403 aa		10.52	□□□□□ -0.73
LDHA-223	ENST00000545215	TOPAZ1	Q8N9V7	1692 aa		10.52	□□□□□ -0.73
LDHA-223	ENST00000545215	ZNF827	Q17R98	1081 aa		10.52	□□□□□ -0.73
LDHA-223	ENST00000545215	SLC24A3	Q9HC58	644 aa		10.52	□□□□□ -0.73
LDHA-223	ENST00000545215	THRAP3	Q9Y2W1	955 aa	Known RBP	10.52	□□□□□ -0.73
LDHA-223	ENST00000545215	ATP7B	P35670	1465 aa		10.51	□□□□□ -0.73
LDHA-223	ENST00000545215	PARP4	Q9UKK3	1724 aa	Known RBP	10.51	□□□□□ -0.73
LDHA-223	ENST00000545215	DLL1	O00548	723 aa		10.51	□□□□□ -0.73
LDHA-223	ENST00000545215	ZMYND10	O75800	440 aa		10.51	□□□□□ -0.73
LDHA-223	ENST00000545215	CAMK2B	Q13554	666 aa		10.51	□□□□□ -0.73
LDHA-223	ENST00000545215	SMC1B	Q8NDV3	1235 aa		10.51	□□□□□ -0.73
LDHA-223	ENST00000545215	DDX27	Q96GQ7	796 aa	Known RBP	10.51	□□□□□ -0.73
LDHA-223	ENST00000545215	CD2AP	Q9Y5K6	639 aa		10.51	□□□□□ -0.73
LDHA-223	ENST00000545215	PAPPA	Q13219	1627 aa		10.5	□□□□□ -0.73
LDHA-223	ENST00000545215	PDE4DIP	Q5VU43	2346 aa		10.5	□□□□□ -0.73
LDHA-223	ENST00000545215	LBX1	P52954	281 aa		10.5	□□□□□ -0.73
LDHA-223	ENST00000545215	PRPF38B	Q5VTL8	546 aa	Known RBP	10.5	□□□□□ -0.73
LDHA-223	ENST00000545215	SMYD5	Q6GMV2	418 aa		10.5	□□□□□ -0.73
LDHA-223	ENST00000545215	CHRDL2	Q6WN34	429 aa		10.5	□□□□□ -0.73
LDHA-223	ENST00000545215	PHF12	Q96QT6	1004 aa		10.5	□□□□□ -0.73
LDHA-223	ENST00000545215	EVA1C	P58658	441 aa		10.49	□□□□□ -0.73
LDHA-223	ENST00000545215	PHRF1	Q9P1Y6	1649 aa	Known RBP	10.49	□□□□□ -0.73
LDHA-223	ENST00000545215	BCL9	O00512	1426 aa		10.49	□□□□□ -0.73
LDHA-223	ENST00000545215	NEUROD2	Q15784	382 aa		10.48	□□□□□ -0.73
LDHA-223	ENST00000545215	CHRNA2	Q15822	529 aa		10.48	□□□□□ -0.73
LDHA-223	ENST00000545215	LARP1	Q6PKG0	1096 aa	Known RBP	10.48	□□□□□ -0.73
LDHA-223	ENST00000545215	SSH2	Q76I76	1423 aa		10.48	□□□□□ -0.73
LDHA-223	ENST00000545215	CD44	P16070	742 aa	Known RBP	10.47	□□□□□ -0.73
LDHA-223	ENST00000545215	AIDA	Q96BJ3	306 aa		10.47	□□□□□ -0.73
LDHA-223	ENST00000545215	TMEM106C	Q9BVX2	250 aa		10.47	□□□□□ -0.73
LDHA-223	ENST00000545215	C10orf71	Q711Q0	1435 aa		10.47	□□□□□ -0.73
LDHA-223	ENST00000545215	NRXN1	Q9ULB1	1477 aa		10.46	□□□□□ -0.73
LDHA-223	ENST00000545215	PNPLA7	Q6ZV29	1317 aa		10.46	□□□□□ -0.73
LDHA-223	ENST00000545215	KIAA0232	Q92628	1395 aa		10.46	□□□□□ -0.74
LDHA-223	ENST00000545215	MYOM3	Q5VTT5	1437 aa		10.45	□□□□□ -0.74
LDHA-223	ENST00000545215	ZNF326	Q5BKZ1	582 aa	Known RBP	10.45	□□□□□ -0.74
LDHA-223	ENST00000545215	QSER1	Q2KHR3	1735 aa		10.45	□□□□□ -0.74
LDHA-223	ENST00000545215	FMN2	Q9NZ56	1722 aa		10.45	□□□□□ -0.74
LDHA-223	ENST00000545215	CIC	Q96RK0	1608 aa	Predicted RBP	10.44	□□□□□ -0.74
LDHA-223	ENST00000545215	GOLGA2	Q08379	1002 aa		10.44	□□□□□ -0.74
LDHA-223	ENST00000545215	DDB1	Q16531	1140 aa		10.44	□□□□□ -0.74
LDHA-223	ENST00000545215	MARCH10	Q8NA82	808 aa	Predicted RBP	10.44	□□□□□ -0.74
LDHA-223	ENST00000545215	PXDNL	A1KZ92	1463 aa		10.44	□□□□□ -0.74
LDHA-223	ENST00000545215	CRYBG1	Q9Y4K1	1723 aa		10.43	□□□□□ -0.74
LDHA-223	ENST00000545215	TRPC6	Q9Y210	931 aa		10.43	□□□□□ -0.74
LDHA-223	ENST00000545215	PITPNM2	Q9BZ72	1349 aa		10.43	□□□□□ -0.74
LDHA-223	ENST00000545215	ALS2	Q96Q42	1657 aa		10.42	□□□□□ -0.74
LDHA-223	ENST00000545215	WAPL	Q7Z5K2	1190 aa		10.42	□□□□□ -0.74
LDHA-223	ENST00000545215	RRAGC	Q9HB90	399 aa		10.42	□□□□□ -0.74
LDHA-223	ENST00000545215	LRRC4B	Q9NT99	713 aa		10.42	□□□□□ -0.74
LDHA-223	ENST00000545215	WBP1L	Q9NX94	342 aa		10.42	□□□□□ -0.74
LDHA-223	ENST00000545215	BRD4	O60885	1362 aa	Predicted RBP	10.41	□□□□□ -0.74
LDHA-223	ENST00000545215	HSPA8	P11142	646 aa	Known RBP	10.41	□□□□□ -0.74
LDHA-223	ENST00000545215	MKRN1	Q9UHC7	482 aa	Known RBP	10.41	□□□□□ -0.74
LDHA-223	ENST00000545215	IGSF1	Q8N6C5	1336 aa		10.41	□□□□□ -0.74
LDHA-223	ENST00000545215	TRPM3	Q9HCF6	1732 aa	Predicted RBP	10.41	□□□□□ -0.74
LDHA-223	ENST00000545215	RGPD8	O14715	1765 aa	Predicted RBP	10.4	□□□□□ -0.74
LDHA-223	ENST00000545215	MKRN3	Q13064	507 aa	Known RBP	10.4	□□□□□ -0.74
LDHA-223	ENST00000545215	KDM2B	Q8NHM5	1336 aa		10.4	□□□□□ -0.74
LDHA-223	ENST00000545215	GCC1	Q96CN9	775 aa		10.39	□□□□□ -0.75
LDHA-223	ENST00000545215	MS4A3	Q96HJ5	214 aa		10.39	□□□□□ -0.75
LDHA-223	ENST00000545215	TFCP2L1	Q9NZI6	479 aa		10.39	□□□□□ -0.75
LDHA-223	ENST00000545215	LRRC37A3	O60309	1634 aa		10.39	□□□□□ -0.75
LDHA-223	ENST00000545215		E9PCH4	1651 aa		10.39	□□□□□ -0.75
LDHA-223	ENST00000545215	ZC3H6	P61129	1189 aa	Known RBP	10.38	□□□□□ -0.75
LDHA-223	ENST00000545215	MLLT3	P42568	568 aa	Predicted RBP	10.37	□□□□□ -0.75
LDHA-223	ENST00000545215	PPP1R15B	Q5SWA1	713 aa		10.37	□□□□□ -0.75
LDHA-223	ENST00000545215	GPHN	Q9NQX3	736 aa	Predicted RBP	10.37	□□□□□ -0.75
LDHA-223	ENST00000545215	KCP	Q6ZWJ8	1503 aa		10.37	□□□□□ -0.75
LDHA-223	ENST00000545215	ANKRD30A	Q9BXX3	1397 aa		10.37	□□□□□ -0.75
LDHA-223	ENST00000545215	RBM26	Q5T8P6	1007 aa	Known RBP	10.36	□□□□□ -0.75
LDHA-223	ENST00000545215	HABP4	Q5JVS0	413 aa	Known RBP	10.35	□□□□□ -0.75
LDHA-223	ENST00000545215	CLTCL1	P53675	1640 aa		10.35	□□□□□ -0.75
LDHA-223	ENST00000545215	CNTNAP1	P78357	1384 aa		10.35	□□□□□ -0.75
LDHA-223	ENST00000545215	PLEKHG2	Q9H7P9	1386 aa		10.35	□□□□□ -0.75
LDHA-223	ENST00000545215	TIE1	P35590	1138 aa		10.34	□□□□□ -0.75
LDHA-223	ENST00000545215	TNRC6C	Q9HCJ0	1690 aa	Known RBP	10.34	□□□□□ -0.75
LDHA-223	ENST00000545215	C9orf131	Q5VYM1	1079 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	MSL1	Q68DK7	614 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	GPIHBP1	Q8IV16	184 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	AK7	Q96M32	723 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	HIRIP3	Q9BW71	556 aa	Predicted RBP	10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	TUBGCP6	Q96RT7	1819 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	GPRASP1	Q5JY77	1395 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	ANKRD30B	Q9BXX2	1392 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	PLEKHH1	Q9ULM0	1364 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	CRB1	P82279	1406 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	AKAP12	Q02952	1782 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	TTLL13P	A6NNM8	815 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	VEGFB	P49765	207 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	SLC27A3	Q5K4L6	730 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	ARHGAP27	Q6ZUM4	889 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	CHIC2	Q9UKJ5	165 aa		10.33	□□□□□ -0.76
LDHA-223	ENST00000545215	LMO7	Q8WWI1	1683 aa		10.32	□□□□□ -0.76
LDHA-223	ENST00000545215	COL23A1	Q86Y22	540 aa	Predicted RBP	10.32	□□□□□ -0.76
LDHA-223	ENST00000545215	EMILIN3	Q9NT22	766 aa		10.32	□□□□□ -0.76
LDHA-223	ENST00000545215	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.32	□□□□□ -0.76

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