RNA–Protein interactions for RNA: ENST00000544454.5

LTBR-213, Transcript of lymphotoxin beta receptor, humanhuman

TSL 5

Gene LTBR, Length 632 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-213ENST00000544454 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.46■□□□□ 0.55
LTBR-213ENST00000544454 WNK3Q9BYP7 1800 aa18.45■□□□□ 0.54
LTBR-213ENST00000544454 SULT6B1Q6IMI4 303 aa18.44■□□□□ 0.54
LTBR-213ENST00000544454 SPG7Q9UQ90 795 aa18.44■□□□□ 0.54
LTBR-213ENST00000544454 RGPD2P0DJD1 1756 aa18.44■□□□□ 0.54
LTBR-213ENST00000544454 PLEKHG2Q9H7P9 1386 aa18.43■□□□□ 0.54
LTBR-213ENST00000544454 BCL11BQ9C0K0 894 aaPredicted RBP18.43■□□□□ 0.54
LTBR-213ENST00000544454 KDRP35968 1356 aa18.42■□□□□ 0.54
LTBR-213ENST00000544454 BAG6P46379 1132 aa18.41■□□□□ 0.54
LTBR-213ENST00000544454 AEBP1Q8IUX7 1158 aa18.41■□□□□ 0.54
LTBR-213ENST00000544454 PCDH11XQ9BZA7 1347 aa18.41■□□□□ 0.54
LTBR-213ENST00000544454 PCDH11YQ9BZA8 1340 aa18.41■□□□□ 0.54
LTBR-213ENST00000544454 APBA3O96018 575 aa18.4■□□□□ 0.54
LTBR-213ENST00000544454 AMOTQ4VCS5 1084 aa18.4■□□□□ 0.54
LTBR-213ENST00000544454 NUDCQ9Y266 331 aa18.4■□□□□ 0.54
LTBR-213ENST00000544454 COL3A1P02461 1466 aaPredicted RBP18.39■□□□□ 0.54
LTBR-213ENST00000544454 CYP27B1O15528 508 aa18.39■□□□□ 0.53
LTBR-213ENST00000544454 PLEKHO1Q53GL0 409 aaPredicted RBP18.39■□□□□ 0.53
LTBR-213ENST00000544454 DEFB132Q7Z7B7 95 aa18.39■□□□□ 0.53
LTBR-213ENST00000544454 U2SURPO15042 1029 aaKnown RBP18.38■□□□□ 0.53
LTBR-213ENST00000544454 NKX1-1Q15270 411 aaPredicted RBP18.38■□□□□ 0.53
LTBR-213ENST00000544454 KCNQ2O43526 872 aa18.37■□□□□ 0.53
LTBR-213ENST00000544454 HMOX1P09601 288 aa18.37■□□□□ 0.53
LTBR-213ENST00000544454 IFNL2Q8IZJ0 200 aa18.37■□□□□ 0.53
LTBR-213ENST00000544454 ACSBG1Q96GR2 724 aa18.37■□□□□ 0.53
LTBR-213ENST00000544454 PRKRIP1Q9H875 184 aaPredicted RBP18.37■□□□□ 0.53
LTBR-213ENST00000544454 PLSCR1O15162 318 aa18.36■□□□□ 0.53
LTBR-213ENST00000544454 EN1Q05925 392 aaPredicted RBP18.36■□□□□ 0.53
LTBR-213ENST00000544454 PTF1AQ7RTS3 328 aa18.36■□□□□ 0.53
LTBR-213ENST00000544454 MYBBP1AQ9BQG0 1328 aaKnown RBP18.36■□□□□ 0.53
LTBR-213ENST00000544454 RGPD1P0DJD0 1748 aa18.35■□□□□ 0.53
LTBR-213ENST00000544454 PHKG2P15735 406 aa18.35■□□□□ 0.53
LTBR-213ENST00000544454 PRIM1P49642 420 aaKnown RBP18.35■□□□□ 0.53
LTBR-213ENST00000544454 CAMKK2Q96RR4 588 aa18.35■□□□□ 0.53
LTBR-213ENST00000544454 HSP90AB1P08238 724 aaKnown RBP18.33■□□□□ 0.52
LTBR-213ENST00000544454 U2AF1L5P0DN76 240 aaPredicted RBP18.33■□□□□ 0.52
LTBR-213ENST00000544454 U2AF1Q01081 240 aaKnown RBP eCLIP18.33■□□□□ 0.52
LTBR-213ENST00000544454 EZH2Q15910 746 aaKnown RBP18.32■□□□□ 0.52
LTBR-213ENST00000544454 ZNF530Q6P9A1 599 aaPredicted RBP18.32■□□□□ 0.52
LTBR-213ENST00000544454 SYTL4Q96C24 671 aaPredicted RBP18.32■□□□□ 0.52
LTBR-213ENST00000544454 FCHSD2O94868 740 aa18.31■□□□□ 0.52
LTBR-213ENST00000544454 PKD1L3Q7Z443 1732 aa18.31■□□□□ 0.52
LTBR-213ENST00000544454 SHANK3Q9BYB0 1731 aa18.3■□□□□ 0.52
LTBR-213ENST00000544454 C1orf141Q5JVX7 400 aa18.3■□□□□ 0.52
LTBR-213ENST00000544454 DCAF5Q96JK2 942 aa18.3■□□□□ 0.52
LTBR-213ENST00000544454 RSPH6AQ9H0K4 717 aa18.3■□□□□ 0.52
LTBR-213ENST00000544454 TNS1Q9HBL0 1735 aaKnown RBP18.29■□□□□ 0.52
LTBR-213ENST00000544454 SBF2Q86WG5 1849 aa18.28■□□□□ 0.52
LTBR-213ENST00000544454 MTHFSDQ2M296 383 aaKnown RBP18.28■□□□□ 0.52
LTBR-213ENST00000544454 AKAP4Q5JQC9 854 aa18.28■□□□□ 0.52
LTBR-213ENST00000544454 ERVV-2B6SEH9 535 aa18.27■□□□□ 0.52
LTBR-213ENST00000544454 PRKAR2BP31323 418 aa18.27■□□□□ 0.52
LTBR-213ENST00000544454 MPRIPQ6WCQ1 1025 aa18.27■□□□□ 0.52
LTBR-213ENST00000544454 PROM2Q8N271 834 aa18.27■□□□□ 0.52
LTBR-213ENST00000544454 NHSQ6T4R5 1651 aa18.27■□□□□ 0.52
LTBR-213ENST00000544454 ANP32CO43423 234 aa18.26■□□□□ 0.51
LTBR-213ENST00000544454 PNNQ9H307 717 aaKnown RBP18.26■□□□□ 0.51
LTBR-213ENST00000544454 TXNRD1Q16881 649 aa18.25■□□□□ 0.51
LTBR-213ENST00000544454 GAS2L2Q8NHY3 880 aa18.25■□□□□ 0.51
LTBR-213ENST00000544454 PIGBQ92521 554 aa18.25■□□□□ 0.51
LTBR-213ENST00000544454 PHACTR3Q96KR7 559 aa18.25■□□□□ 0.51
LTBR-213ENST00000544454 TMOD3Q9NYL9 352 aa18.24■□□□□ 0.51
LTBR-213ENST00000544454 NEFMP07197 916 aa18.22■□□□□ 0.51
LTBR-213ENST00000544454 CABP4P57796 275 aa18.22■□□□□ 0.51
LTBR-213ENST00000544454 SLC27A3Q5K4L6 730 aa18.22■□□□□ 0.51
LTBR-213ENST00000544454 NBPF14Q5TI25 921 aa18.22■□□□□ 0.51
LTBR-213ENST00000544454 SMARCC1Q92922 1105 aaPredicted RBP18.22■□□□□ 0.51
LTBR-213ENST00000544454 GNAT3A8MTJ3 354 aa18.21■□□□□ 0.51
LTBR-213ENST00000544454 PLEKHF1Q96S99 279 aa18.21■□□□□ 0.51
LTBR-213ENST00000544454 KDM6AO15550 1401 aaPredicted RBP18.21■□□□□ 0.51
LTBR-213ENST00000544454 RNMTO43148 476 aaKnown RBP18.2■□□□□ 0.5
LTBR-213ENST00000544454 LGR6Q9HBX8 967 aa18.2■□□□□ 0.5
LTBR-213ENST00000544454 DOT1LQ8TEK3 1739 aa18.2■□□□□ 0.5
LTBR-213ENST00000544454 WDR43Q15061 677 aaKnown RBP eCLIP18.19■□□□□ 0.5
LTBR-213ENST00000544454 NFATC2IPQ8NCF5 419 aa18.19■□□□□ 0.5
LTBR-213ENST00000544454 RGPD3A6NKT7 1758 aaPredicted RBP18.19■□□□□ 0.5
LTBR-213ENST00000544454 RGPD4Q7Z3J3 1758 aa18.19■□□□□ 0.5
LTBR-213ENST00000544454 MAP3K5Q99683 1374 aa18.18■□□□□ 0.5
LTBR-213ENST00000544454 KAT6BQ8WYB5 2073 aa18.18■□□□□ 0.5
LTBR-213ENST00000544454 HMGB2P26583 209 aaKnown RBP18.18■□□□□ 0.5
LTBR-213ENST00000544454 BTAF1O14981 1849 aa18.18■□□□□ 0.5
LTBR-213ENST00000544454 IL17REQ8NFR9 667 aa18.17■□□□□ 0.5
LTBR-213ENST00000544454 SLC52A2Q9HAB3 445 aa18.17■□□□□ 0.5
LTBR-213ENST00000544454 ATG3Q9NT62 314 aa18.17■□□□□ 0.5
LTBR-213ENST00000544454 LRRC4BQ9NT99 713 aa18.17■□□□□ 0.5
LTBR-213ENST00000544454 ASAP1Q9ULH1 1129 aa18.17■□□□□ 0.5
LTBR-213ENST00000544454 PALLDQ8WX93 1383 aa18.17■□□□□ 0.5
LTBR-213ENST00000544454 TOGARAM1Q9Y4F4 1720 aa18.16■□□□□ 0.5
LTBR-213ENST00000544454 HTATSF1O43719 755 aaKnown RBP18.16■□□□□ 0.5
LTBR-213ENST00000544454 CCNL1Q9UK58 526 aaPredicted RBP18.16■□□□□ 0.5
LTBR-213ENST00000544454 ADAMTS8Q9UP79 889 aa18.16■□□□□ 0.5
LTBR-213ENST00000544454 RTF1Q92541 710 aaKnown RBP18.15■□□□□ 0.5
LTBR-213ENST00000544454 MAPK8IP3Q9UPT6 1336 aa18.15■□□□□ 0.5
LTBR-213ENST00000544454 R3HDM1Q15032 1099 aaKnown RBP18.14■□□□□ 0.49
LTBR-213ENST00000544454 NFE2L2Q16236 605 aa18.14■□□□□ 0.49
LTBR-213ENST00000544454 RREB1Q92766 1687 aa18.14■□□□□ 0.49
LTBR-213ENST00000544454 LOC102724428A0A0B4J2F2 783 aa18.13■□□□□ 0.49
LTBR-213ENST00000544454 SIK1P57059 783 aa18.13■□□□□ 0.49
LTBR-213ENST00000544454 CCDC184Q52MB2 194 aa18.13■□□□□ 0.49
LTBR-213ENST00000544454 ANO8Q9HCE9 1232 aaPredicted RBP18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms