RNA–Protein interactions for RNA: ENST00000543233.2

CDH4-201, Transcript of cadherin 4, humanhuman

TSL 2 BASIC

Gene CDH4, Length 3,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4-201ENST00000543233 MYRIPQ8NFW9 859 aa13.82□□□□□ -0.2
CDH4-201ENST00000543233 TIGD1Q96MW7 591 aa13.82□□□□□ -0.2
CDH4-201ENST00000543233 PDZRN3Q9UPQ7 1066 aa13.82□□□□□ -0.2
CDH4-201ENST00000543233 DDX49Q9Y6V7 483 aaKnown RBP13.82□□□□□ -0.2
CDH4-201ENST00000543233 ZMYM3Q14202 1370 aa13.82□□□□□ -0.2
CDH4-201ENST00000543233 SHPRHQ149N8 1683 aa13.82□□□□□ -0.2
CDH4-201ENST00000543233 ALKQ9UM73 1620 aa13.82□□□□□ -0.2
CDH4-201ENST00000543233 SKOR2Q2VWA4 1001 aaPredicted RBP13.82□□□□□ -0.2
CDH4-201ENST00000543233 CCDC27Q2M243 656 aa13.81□□□□□ -0.2
CDH4-201ENST00000543233 ZFYVE9O95405 1425 aa13.81□□□□□ -0.2
CDH4-201ENST00000543233 FAM83GA6ND36 823 aa13.81□□□□□ -0.2
CDH4-201ENST00000543233 TNPO1Q92973 898 aaKnown RBP13.81□□□□□ -0.2
CDH4-201ENST00000543233 BCCIPQ9P287 314 aaKnown RBP eCLIP13.81□□□□□ -0.2
CDH4-201ENST00000543233 MPNDQ8N594 471 aa13.81□□□□□ -0.2
CDH4-201ENST00000543233 A2ML1A8K2U0 1454 aa13.8□□□□□ -0.2
CDH4-201ENST00000543233 CD163L1Q9NR16 1453 aa13.8□□□□□ -0.2
CDH4-201ENST00000543233 COG3Q96JB2 828 aa13.8□□□□□ -0.2
CDH4-201ENST00000543233 TBC1D32Q96NH3 1257 aa13.8□□□□□ -0.2
CDH4-201ENST00000543233 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.8□□□□□ -0.2
CDH4-201ENST00000543233 IQSEC2Q5JU85 1478 aa13.8□□□□□ -0.2
CDH4-201ENST00000543233 TULP1O00294 542 aaPredicted RBP13.8□□□□□ -0.2
CDH4-201ENST00000543233 MVPQ14764 893 aaKnown RBP13.8□□□□□ -0.2
CDH4-201ENST00000543233 KIF3AQ9Y496 699 aa13.8□□□□□ -0.2
CDH4-201ENST00000543233 GOLGA6L22H0YM25 854 aa13.79□□□□□ -0.2
CDH4-201ENST00000543233 MFAP1P55081 439 aaKnown RBP13.79□□□□□ -0.2
CDH4-201ENST00000543233 PMFBP1Q8TBY8 1022 aa13.79□□□□□ -0.2
CDH4-201ENST00000543233 TMEM57Q8N5G2 664 aa13.79□□□□□ -0.2
CDH4-201ENST00000543233 PPIP5K1Q6PFW1 1433 aa13.79□□□□□ -0.2
CDH4-201ENST00000543233 FAM193AP78312 1265 aa13.79□□□□□ -0.2
CDH4-201ENST00000543233 C1orf115Q9H7X2 142 aa13.79□□□□□ -0.2
CDH4-201ENST00000543233 CLTCQ00610 1675 aaKnown RBP13.78□□□□□ -0.2
CDH4-201ENST00000543233 CLGNO14967 610 aa13.78□□□□□ -0.2
CDH4-201ENST00000543233 KIAA2012Q0VF49 1180 aa13.78□□□□□ -0.2
CDH4-201ENST00000543233 RWDD1Q9H446 243 aaPredicted RBP13.78□□□□□ -0.2
CDH4-201ENST00000543233 CCDC61Q9Y6R9 512 aa13.78□□□□□ -0.2
CDH4-201ENST00000543233 NINLQ9Y2I6 1382 aa13.78□□□□□ -0.2
CDH4-201ENST00000543233 HS1BP3Q53T59 392 aa13.78□□□□□ -0.2
CDH4-201ENST00000543233 TSPYL6Q8N831 410 aa13.78□□□□□ -0.2
CDH4-201ENST00000543233 ARHGEF40Q8TER5 1519 aa13.77□□□□□ -0.2
CDH4-201ENST00000543233 HSP90AB1P08238 724 aaKnown RBP13.77□□□□□ -0.21
CDH4-201ENST00000543233 ATF7IPQ6VMQ6 1270 aa13.77□□□□□ -0.21
CDH4-201ENST00000543233 FCHSD2O94868 740 aa13.77□□□□□ -0.21
CDH4-201ENST00000543233 LTKP29376 864 aa13.77□□□□□ -0.21
CDH4-201ENST00000543233 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.77□□□□□ -0.21
CDH4-201ENST00000543233 CCDC39Q9UFE4 941 aa13.77□□□□□ -0.21
CDH4-201ENST00000543233 HMGN5P82970 282 aaKnown RBP13.76□□□□□ -0.21
CDH4-201ENST00000543233 NUTM2GQ5VZR2 741 aa13.76□□□□□ -0.21
CDH4-201ENST00000543233 BCL2L12Q9HB09 334 aa13.76□□□□□ -0.21
CDH4-201ENST00000543233 RBM33Q96EV2 1170 aaKnown RBP13.75□□□□□ -0.21
CDH4-201ENST00000543233 PRR36Q9H6K5 1346 aa13.75□□□□□ -0.21
CDH4-201ENST00000543233 CAVIN1Q6NZI2 390 aaKnown RBP13.75□□□□□ -0.21
CDH4-201ENST00000543233 HDGFP51858 240 aaKnown RBP13.74□□□□□ -0.21
CDH4-201ENST00000543233 SULT6B1Q6IMI4 303 aa13.74□□□□□ -0.21
CDH4-201ENST00000543233 NLRP1Q9C000 1473 aa13.74□□□□□ -0.21
CDH4-201ENST00000543233 LOC102724159A0A0B4J2E5 919 aa13.74□□□□□ -0.21
CDH4-201ENST00000543233 PWP2Q15269 919 aaKnown RBP13.74□□□□□ -0.21
CDH4-201ENST00000543233 NFE2L2Q16236 605 aa13.74□□□□□ -0.21
CDH4-201ENST00000543233 KRT24Q2M2I5 525 aa13.74□□□□□ -0.21
CDH4-201ENST00000543233 TMX1Q9H3N1 280 aa13.74□□□□□ -0.21
CDH4-201ENST00000543233 TNRQ92752 1358 aa13.74□□□□□ -0.21
CDH4-201ENST00000543233 PPP6R1Q9UPN7 881 aa13.73□□□□□ -0.21
CDH4-201ENST00000543233 CAPN2P17655 700 aa13.73□□□□□ -0.21
CDH4-201ENST00000543233 SLC20A2Q08357 652 aa13.73□□□□□ -0.21
CDH4-201ENST00000543233 EP400NLQ6ZTU2 488 aa13.73□□□□□ -0.21
CDH4-201ENST00000543233 C22orf23Q9BZE7 217 aa13.73□□□□□ -0.21
CDH4-201ENST00000543233 LNPKQ9C0E8 428 aa13.73□□□□□ -0.21
CDH4-201ENST00000543233 PRR29P0C7W0 189 aa13.73□□□□□ -0.21
CDH4-201ENST00000543233 PTMSP20962 102 aa13.73□□□□□ -0.21
CDH4-201ENST00000543233 IL13P35225 146 aa13.73□□□□□ -0.21
CDH4-201ENST00000543233 C14orf37Q86TY3 774 aa13.73□□□□□ -0.21
CDH4-201ENST00000543233 PRIMPOLQ96LW4 560 aa13.73□□□□□ -0.21
CDH4-201ENST00000543233 RBSNQ9H1K0 784 aa13.73□□□□□ -0.21
CDH4-201ENST00000543233 MCM5P33992 734 aa13.72□□□□□ -0.21
CDH4-201ENST00000543233 HSP90AB2PQ58FF8 381 aa13.72□□□□□ -0.21
CDH4-201ENST00000543233 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.72□□□□□ -0.21
CDH4-201ENST00000543233 RNF214Q8ND24 703 aa13.72□□□□□ -0.21
CDH4-201ENST00000543233 DDX19BQ9UMR2 479 aa13.72□□□□□ -0.21
CDH4-201ENST00000543233 ROBO2Q9HCK4 1378 aa13.72□□□□□ -0.21
CDH4-201ENST00000543233 ACEP12821 1306 aa13.72□□□□□ -0.21
CDH4-201ENST00000543233 MBIPQ9NS73 344 aa13.72□□□□□ -0.21
CDH4-201ENST00000543233 MCM10Q7L590 875 aa13.71□□□□□ -0.21
CDH4-201ENST00000543233 MIS18AQ9NYP9 233 aa13.71□□□□□ -0.21
CDH4-201ENST00000543233 COL3A1P02461 1466 aaPredicted RBP13.71□□□□□ -0.21
CDH4-201ENST00000543233 CALCOCO1Q9P1Z2 691 aa13.71□□□□□ -0.21
CDH4-201ENST00000543233 IPO8O15397 1037 aaKnown RBP13.7□□□□□ -0.22
CDH4-201ENST00000543233 C8orf58Q8NAV2 365 aa13.7□□□□□ -0.22
CDH4-201ENST00000543233 NGDNQ8NEJ9 315 aaKnown RBP13.7□□□□□ -0.22
CDH4-201ENST00000543233 C17orf53Q8N3J3 647 aaPredicted RBP13.7□□□□□ -0.22
CDH4-201ENST00000543233 USP32Q8NFA0 1604 aa13.69□□□□□ -0.22
CDH4-201ENST00000543233 TWISTNBQ3B726 338 aaPredicted RBP13.69□□□□□ -0.22
CDH4-201ENST00000543233 PNPLA6Q8IY17 1366 aa13.69□□□□□ -0.22
CDH4-201ENST00000543233 APBB1O00213 710 aa13.69□□□□□ -0.22
CDH4-201ENST00000543233 CHAF1AQ13111 956 aaPredicted RBP13.69□□□□□ -0.22
CDH4-201ENST00000543233 LTV1Q96GA3 475 aaPredicted RBP13.69□□□□□ -0.22
CDH4-201ENST00000543233 AMOTL2Q9Y2J4 779 aa13.69□□□□□ -0.22
CDH4-201ENST00000543233 EID1Q9Y6B2 187 aa13.69□□□□□ -0.22
CDH4-201ENST00000543233 KIF16BQ96L93 1317 aa13.68□□□□□ -0.22
CDH4-201ENST00000543233 VAMP4O75379 141 aa13.68□□□□□ -0.22
CDH4-201ENST00000543233 PSEN1P49768 467 aa13.68□□□□□ -0.22
CDH4-201ENST00000543233 GABPB1Q06547 395 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms