RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 TSKSQ9UJT2 592 aa5.01□□□□□ -1.61
CHD4-209ENST00000542717 LMO7Q8WWI1 1683 aa5.01□□□□□ -1.61
CHD4-209ENST00000542717 TRPM1Q7Z4N2 1603 aa5.01□□□□□ -1.61
CHD4-209ENST00000542717 MINK1Q8N4C8 1332 aaPredicted RBP5□□□□□ -1.61
CHD4-209ENST00000542717 PRR36Q9H6K5 1346 aa5□□□□□ -1.61
CHD4-209ENST00000542717 PHF14O94880 888 aa5□□□□□ -1.61
CHD4-209ENST00000542717 TGFB2P61812 414 aa5□□□□□ -1.61
CHD4-209ENST00000542717 GRM1Q13255 1194 aa5□□□□□ -1.61
CHD4-209ENST00000542717 DEFB115Q30KQ5 88 aa5□□□□□ -1.61
CHD4-209ENST00000542717 SMIM5Q71RC9 77 aa5□□□□□ -1.61
CHD4-209ENST00000542717 CARD10Q9BWT7 1032 aa5□□□□□ -1.61
CHD4-209ENST00000542717 KNDC1Q76NI1 1749 aa5□□□□□ -1.61
CHD4-209ENST00000542717 PIK3C2AO00443 1686 aa4.99□□□□□ -1.61
CHD4-209ENST00000542717 GLTPD2A6NH11 291 aa4.99□□□□□ -1.61
CHD4-209ENST00000542717 TMEM88BA6NKF7 163 aa4.99□□□□□ -1.61
CHD4-209ENST00000542717 DPEP1P16444 411 aa4.99□□□□□ -1.61
CHD4-209ENST00000542717 RGL3Q3MIN7 710 aa4.99□□□□□ -1.61
CHD4-209ENST00000542717 DDX54Q8TDD1 881 aaKnown RBP4.99□□□□□ -1.61
CHD4-209ENST00000542717 PKD1L3Q7Z443 1732 aa4.99□□□□□ -1.61
CHD4-209ENST00000542717 TNRC18O15417 2968 aaPredicted RBP4.99□□□□□ -1.61
CHD4-209ENST00000542717 PITPNM2Q9BZ72 1349 aa4.98□□□□□ -1.61
CHD4-209ENST00000542717 WDR33Q9C0J8 1336 aaKnown RBP4.98□□□□□ -1.61
CHD4-209ENST00000542717 WASLO00401 505 aaPredicted RBP4.98□□□□□ -1.61
CHD4-209ENST00000542717 SOX12O15370 315 aa4.98□□□□□ -1.61
CHD4-209ENST00000542717 HMGB2P26583 209 aaKnown RBP4.98□□□□□ -1.61
CHD4-209ENST00000542717 APLP2Q06481 763 aa4.98□□□□□ -1.61
CHD4-209ENST00000542717 DPY19L2Q6NUT2 758 aa4.98□□□□□ -1.61
CHD4-209ENST00000542717 MPNDQ8N594 471 aa4.98□□□□□ -1.61
CHD4-209ENST00000542717 AK7Q96M32 723 aa4.98□□□□□ -1.61
CHD4-209ENST00000542717 ABT1Q9ULW3 272 aaKnown RBP4.98□□□□□ -1.61
CHD4-209ENST00000542717 CCDC7Q96M83 1385 aa4.98□□□□□ -1.61
CHD4-209ENST00000542717 PPIP5K1Q6PFW1 1433 aa4.97□□□□□ -1.61
CHD4-209ENST00000542717 WNK3Q9BYP7 1800 aa4.97□□□□□ -1.61
CHD4-209ENST00000542717 PPLO60437 1756 aa4.97□□□□□ -1.61
CHD4-209ENST00000542717 MMP10P09238 476 aa4.97□□□□□ -1.61
CHD4-209ENST00000542717 IL2RBP14784 551 aa4.97□□□□□ -1.61
CHD4-209ENST00000542717 PRIM1P49642 420 aaKnown RBP4.97□□□□□ -1.61
CHD4-209ENST00000542717 FXR1P51114 621 aaKnown RBP eCLIP4.97□□□□□ -1.61
CHD4-209ENST00000542717 NLRP6P59044 892 aa4.97□□□□□ -1.61
CHD4-209ENST00000542717 DALRD3Q5D0E6 543 aaKnown RBP4.97□□□□□ -1.61
CHD4-209ENST00000542717 NUDT16Q96DE0 195 aaKnown RBP4.97□□□□□ -1.61
CHD4-209ENST00000542717 NLRP2Q9NX02 1062 aa4.97□□□□□ -1.61
CHD4-209ENST00000542717 PIM2Q9P1W9 311 aa4.97□□□□□ -1.61
CHD4-209ENST00000542717 AXIN2Q9Y2T1 843 aa4.97□□□□□ -1.61
CHD4-209ENST00000542717 ACEP12821 1306 aa4.97□□□□□ -1.61
CHD4-209ENST00000542717 ZC3H4Q9UPT8 1303 aaKnown RBP4.97□□□□□ -1.61
CHD4-209ENST00000542717 N4BP2Q86UW6 1770 aaPredicted RBP4.96□□□□□ -1.61
CHD4-209ENST00000542717 USP47Q96K76 1375 aa4.96□□□□□ -1.62
CHD4-209ENST00000542717 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.96□□□□□ -1.62
CHD4-209ENST00000542717 POTEIP0CG38 1075 aa4.96□□□□□ -1.62
CHD4-209ENST00000542717 POTEJP0CG39 1038 aa4.96□□□□□ -1.62
CHD4-209ENST00000542717 ECE1P42892 770 aa4.96□□□□□ -1.62
CHD4-209ENST00000542717 RASSF7Q02833 373 aa4.96□□□□□ -1.62
CHD4-209ENST00000542717 CCDC87Q9NVE4 849 aa4.96□□□□□ -1.62
CHD4-209ENST00000542717 CLEC11AQ9Y240 323 aa4.96□□□□□ -1.62
CHD4-209ENST00000542717 ITSN1Q15811 1721 aa4.96□□□□□ -1.62
CHD4-209ENST00000542717 COL18A1P39060 1754 aa4.96□□□□□ -1.62
CHD4-209ENST00000542717 ERBB3P21860 1342 aa4.96□□□□□ -1.62
CHD4-209ENST00000542717 VIRMAQ69YN4 1812 aaKnown RBP4.95□□□□□ -1.62
CHD4-209ENST00000542717 CASP8AP2Q9UKL3 1982 aa4.95□□□□□ -1.62
CHD4-209ENST00000542717 RASSF10A6NK89 507 aa4.95□□□□□ -1.62
CHD4-209ENST00000542717 LMNB1P20700 586 aa4.95□□□□□ -1.62
CHD4-209ENST00000542717 ITGAEP38570 1179 aa4.95□□□□□ -1.62
CHD4-209ENST00000542717 DCAF5Q96JK2 942 aa4.95□□□□□ -1.62
CHD4-209ENST00000542717 GPR101Q96P66 508 aaPredicted RBP4.95□□□□□ -1.62
CHD4-209ENST00000542717 TRAK1Q9UPV9 953 aa4.95□□□□□ -1.62
CHD4-209ENST00000542717 ABCC6O95255 1503 aa4.95□□□□□ -1.62
CHD4-209ENST00000542717 SPATA31E1Q6ZUB1 1445 aa4.95□□□□□ -1.62
CHD4-209ENST00000542717 VPS8Q8N3P4 1428 aa4.95□□□□□ -1.62
CHD4-209ENST00000542717 CA12O43570 354 aa4.94□□□□□ -1.62
CHD4-209ENST00000542717 EAPPQ56P03 285 aaPredicted RBP4.94□□□□□ -1.62
CHD4-209ENST00000542717 CFAP70Q5T0N1 1121 aa4.94□□□□□ -1.62
CHD4-209ENST00000542717 CAPNS2Q96L46 248 aa4.94□□□□□ -1.62
CHD4-209ENST00000542717 PASKQ96RG2 1323 aa4.94□□□□□ -1.62
CHD4-209ENST00000542717 POLR3AO14802 1390 aaPredicted RBP4.93□□□□□ -1.62
CHD4-209ENST00000542717 ANKRD36BQ8N2N9 1353 aa4.93□□□□□ -1.62
CHD4-209ENST00000542717 POTECB2RU33 542 aa4.93□□□□□ -1.62
CHD4-209ENST00000542717 CYP4F22Q6NT55 531 aa4.93□□□□□ -1.62
CHD4-209ENST00000542717 LDHDQ86WU2 507 aa4.93□□□□□ -1.62
CHD4-209ENST00000542717 NSD3Q9BZ95 1437 aa4.93□□□□□ -1.62
CHD4-209ENST00000542717 C14orf93Q9H972 538 aaKnown RBP4.93□□□□□ -1.62
CHD4-209ENST00000542717 PARP3Q9Y6F1 533 aa4.93□□□□□ -1.62
CHD4-209ENST00000542717 LY75O60449 1722 aa4.92□□□□□ -1.62
CHD4-209ENST00000542717 PIK3C2GO75747 1445 aa4.92□□□□□ -1.62
CHD4-209ENST00000542717 CPSF1Q10570 1443 aaKnown RBP4.92□□□□□ -1.62
CHD4-209ENST00000542717 KCNA3P22001 575 aa4.92□□□□□ -1.62
CHD4-209ENST00000542717 SSFA2P28290 1259 aa4.92□□□□□ -1.62
CHD4-209ENST00000542717 ARHGEF25Q86VW2 580 aa4.92□□□□□ -1.62
CHD4-209ENST00000542717 AMIGO3Q86WK7 504 aa4.92□□□□□ -1.62
CHD4-209ENST00000542717 CCDC61Q9Y6R9 512 aa4.92□□□□□ -1.62
CHD4-209ENST00000542717 SBF1O95248 1867 aa4.92□□□□□ -1.62
CHD4-209ENST00000542717 ARFGEF1Q9Y6D6 1849 aa4.91□□□□□ -1.62
CHD4-209ENST00000542717 IQCA1LA6NCM1 817 aa4.91□□□□□ -1.62
CHD4-209ENST00000542717 GNPATO15228 680 aa4.91□□□□□ -1.62
CHD4-209ENST00000542717 AOC2O75106 756 aa4.91□□□□□ -1.62
CHD4-209ENST00000542717 ITGBL1O95965 494 aaPredicted RBP4.91□□□□□ -1.62
CHD4-209ENST00000542717 CHRNA5P30532 468 aa4.91□□□□□ -1.62
CHD4-209ENST00000542717 MNX1P50219 401 aaPredicted RBP4.91□□□□□ -1.62
CHD4-209ENST00000542717 TMF1P82094 1093 aa4.91□□□□□ -1.62
CHD4-209ENST00000542717 ERFEQ4G0M1 354 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 157.6 ms