RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 U2SURPO15042 1029 aaKnown RBP10.1□□□□□ -0.79
PDLIM5-221ENST00000542407 PTMAP06454 111 aaKnown RBP10.1□□□□□ -0.79
PDLIM5-221ENST00000542407 TRIM35Q9UPQ4 493 aa10.09□□□□□ -0.79
PDLIM5-221ENST00000542407 ADGRL3Q9HAR2 1447 aa10.09□□□□□ -0.79
PDLIM5-221ENST00000542407 TTC21AQ8NDW8 1320 aa10.09□□□□□ -0.79
PDLIM5-221ENST00000542407 VGLL3A8MV65 326 aa10.08□□□□□ -0.8
PDLIM5-221ENST00000542407 TMPOP42166 694 aaKnown RBP10.08□□□□□ -0.8
PDLIM5-221ENST00000542407 RRS1Q15050 365 aaKnown RBP10.08□□□□□ -0.8
PDLIM5-221ENST00000542407 NEUROD2Q15784 382 aa10.08□□□□□ -0.8
PDLIM5-221ENST00000542407 C20orf194Q5TEA3 1177 aa10.08□□□□□ -0.8
PDLIM5-221ENST00000542407 FCHSD2O94868 740 aa10.08□□□□□ -0.8
PDLIM5-221ENST00000542407 PMFBP1Q8TBY8 1022 aa10.08□□□□□ -0.8
PDLIM5-221ENST00000542407 CLGNO14967 610 aa10.07□□□□□ -0.8
PDLIM5-221ENST00000542407 CRBNQ96SW2 442 aa10.06□□□□□ -0.8
PDLIM5-221ENST00000542407 PDCL3Q9H2J4 239 aa10.06□□□□□ -0.8
PDLIM5-221ENST00000542407 IRX3P78415 501 aaPredicted RBP10.06□□□□□ -0.8
PDLIM5-221ENST00000542407 MAPK8IP3Q9UPT6 1336 aa10.05□□□□□ -0.8
PDLIM5-221ENST00000542407 BCAR3O75815 825 aa10.05□□□□□ -0.8
PDLIM5-221ENST00000542407 PRKAR2BP31323 418 aa10.05□□□□□ -0.8
PDLIM5-221ENST00000542407 PSMD1Q99460 953 aa10.05□□□□□ -0.8
PDLIM5-221ENST00000542407 IL16Q14005 1332 aa10.05□□□□□ -0.8
PDLIM5-221ENST00000542407 STRCP1A6NGW2 1772 aa10.05□□□□□ -0.8
PDLIM5-221ENST00000542407 MCCP23508 829 aa10.04□□□□□ -0.8
PDLIM5-221ENST00000542407 L1TD1Q5T7N2 865 aaKnown RBP10.04□□□□□ -0.8
PDLIM5-221ENST00000542407 PHACTR3Q96KR7 559 aa10.04□□□□□ -0.8
PDLIM5-221ENST00000542407 DLG5Q8TDM6 1919 aa10.04□□□□□ -0.8
PDLIM5-221ENST00000542407 MMP14P50281 582 aa10.04□□□□□ -0.8
PDLIM5-221ENST00000542407 EIF4A2Q14240 407 aaKnown RBP10.04□□□□□ -0.8
PDLIM5-221ENST00000542407 NGDNQ8NEJ9 315 aaKnown RBP10.04□□□□□ -0.8
PDLIM5-221ENST00000542407 RBM33Q96EV2 1170 aaKnown RBP10.04□□□□□ -0.8
PDLIM5-221ENST00000542407 SLKQ9H2G2 1235 aaPredicted RBP10.04□□□□□ -0.8
PDLIM5-221ENST00000542407 HDAC5Q9UQL6 1122 aa10.04□□□□□ -0.8
PDLIM5-221ENST00000542407 SPDYE4A6NLX3 237 aa10.03□□□□□ -0.8
PDLIM5-221ENST00000542407 HMOX1P09601 288 aa10.03□□□□□ -0.8
PDLIM5-221ENST00000542407 PTMSP20962 102 aa10.03□□□□□ -0.8
PDLIM5-221ENST00000542407 RARSP54136 660 aaKnown RBP10.03□□□□□ -0.8
PDLIM5-221ENST00000542407 RIPK4P57078 832 aa10.03□□□□□ -0.8
PDLIM5-221ENST00000542407 GZF1Q9H116 711 aaPredicted RBP10.02□□□□□ -0.8
PDLIM5-221ENST00000542407 MYH16Q9H6N6 1097 aa10.02□□□□□ -0.8
PDLIM5-221ENST00000542407 C1orf115Q9H7X2 142 aa10.02□□□□□ -0.8
PDLIM5-221ENST00000542407 MAP3K19Q56UN5 1328 aa10.02□□□□□ -0.81
PDLIM5-221ENST00000542407 NFE2L2Q16236 605 aa10.02□□□□□ -0.81
PDLIM5-221ENST00000542407 FAM161AQ3B820 660 aa10.02□□□□□ -0.81
PDLIM5-221ENST00000542407 SBNO1A3KN83 1393 aa10.02□□□□□ -0.81
PDLIM5-221ENST00000542407 NFAT5O94916 1531 aa10.02□□□□□ -0.81
PDLIM5-221ENST00000542407 TRPM3Q9HCF6 1732 aaPredicted RBP10.01□□□□□ -0.81
PDLIM5-221ENST00000542407 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.01□□□□□ -0.81
PDLIM5-221ENST00000542407 TSR2Q969E8 191 aaKnown RBP10.01□□□□□ -0.81
PDLIM5-221ENST00000542407 PHF8Q9UPP1 1060 aa10.01□□□□□ -0.81
PDLIM5-221ENST00000542407 HSP90AB2PQ58FF8 381 aa10.01□□□□□ -0.81
PDLIM5-221ENST00000542407 ZNF622Q969S3 477 aaKnown RBP eCLIP10.01□□□□□ -0.81
PDLIM5-221ENST00000542407 PRDM16Q9HAZ2 1276 aa10.01□□□□□ -0.81
PDLIM5-221ENST00000542407 FLT4P35916 1363 aa10.01□□□□□ -0.81
PDLIM5-221ENST00000542407 ARHGEF10O15013 1369 aa10□□□□□ -0.81
PDLIM5-221ENST00000542407 PHRF1Q9P1Y6 1649 aaKnown RBP10□□□□□ -0.81
PDLIM5-221ENST00000542407 AEBP1Q8IUX7 1158 aa10□□□□□ -0.81
PDLIM5-221ENST00000542407 KDM2BQ8NHM5 1336 aa10□□□□□ -0.81
PDLIM5-221ENST00000542407 KIF24Q5T7B8 1368 aa9.99□□□□□ -0.81
PDLIM5-221ENST00000542407 CT47B1P0C2W7 299 aaPredicted RBP9.99□□□□□ -0.81
PDLIM5-221ENST00000542407 PANK2Q9BZ23 570 aa9.99□□□□□ -0.81
PDLIM5-221ENST00000542407 KIF1AQ12756 1690 aa9.99□□□□□ -0.81
PDLIM5-221ENST00000542407 KDRP35968 1356 aa9.99□□□□□ -0.81
PDLIM5-221ENST00000542407 CERS3Q8IU89 383 aa9.99□□□□□ -0.81
PDLIM5-221ENST00000542407 LTN1O94822 1766 aa9.99□□□□□ -0.81
PDLIM5-221ENST00000542407 GOLGA6L3A6NEY3 463 aa9.99□□□□□ -0.81
PDLIM5-221ENST00000542407 XRCC6P12956 609 aaKnown RBP eCLIP9.99□□□□□ -0.81
PDLIM5-221ENST00000542407 PDE3AQ14432 1141 aa9.99□□□□□ -0.81
PDLIM5-221ENST00000542407 C8orf34Q49A92 452 aa9.99□□□□□ -0.81
PDLIM5-221ENST00000542407 SOX12O15370 315 aa9.98□□□□□ -0.81
PDLIM5-221ENST00000542407 APPP05067 770 aa9.98□□□□□ -0.81
PDLIM5-221ENST00000542407 ZNF853P0CG23 659 aa9.98□□□□□ -0.81
PDLIM5-221ENST00000542407 CLCN1P35523 988 aa9.98□□□□□ -0.81
PDLIM5-221ENST00000542407 EXOSC9Q06265 439 aaKnown RBP9.98□□□□□ -0.81
PDLIM5-221ENST00000542407 SLIT3O75094 1523 aa9.98□□□□□ -0.81
PDLIM5-221ENST00000542407 NLRP6P59044 892 aa9.98□□□□□ -0.81
PDLIM5-221ENST00000542407 ZHX1Q9UKY1 873 aaPredicted RBP9.98□□□□□ -0.81
PDLIM5-221ENST00000542407 C1orf167Q5SNV9 1468 aa9.98□□□□□ -0.81
PDLIM5-221ENST00000542407 LMTK3Q96Q04 1460 aa9.98□□□□□ -0.81
PDLIM5-221ENST00000542407 MST1RQ04912 1400 aa9.97□□□□□ -0.81
PDLIM5-221ENST00000542407 ZNF526Q8TF50 670 aaPredicted RBP9.97□□□□□ -0.81
PDLIM5-221ENST00000542407 IGSF1Q8N6C5 1336 aa9.97□□□□□ -0.81
PDLIM5-221ENST00000542407 OS9Q13438 667 aaPredicted RBP9.97□□□□□ -0.81
PDLIM5-221ENST00000542407 SULT6B1Q6IMI4 303 aa9.97□□□□□ -0.81
PDLIM5-221ENST00000542407 STRCQ7RTU9 1775 aa9.97□□□□□ -0.81
PDLIM5-221ENST00000542407 RTL1A6NKG5 1358 aa9.97□□□□□ -0.81
PDLIM5-221ENST00000542407 NUTM2GQ5VZR2 741 aa9.96□□□□□ -0.81
PDLIM5-221ENST00000542407 SMAP1Q8IYB5 467 aaPredicted RBP9.96□□□□□ -0.81
PDLIM5-221ENST00000542407 THUMPD2Q9BTF0 503 aaKnown RBP9.96□□□□□ -0.81
PDLIM5-221ENST00000542407 TNNQ9UQP3 1299 aa9.96□□□□□ -0.81
PDLIM5-221ENST00000542407 DCCP43146 1447 aa9.96□□□□□ -0.81
PDLIM5-221ENST00000542407 NCOA3Q9Y6Q9 1424 aa9.96□□□□□ -0.81
PDLIM5-221ENST00000542407 XIRP1Q702N8 1843 aaKnown RBP9.96□□□□□ -0.81
PDLIM5-221ENST00000542407 KDM4FA0A1W2PPD8 638 aa9.96□□□□□ -0.82
PDLIM5-221ENST00000542407 RLBP1P12271 317 aa9.96□□□□□ -0.82
PDLIM5-221ENST00000542407 HOXC9P31274 260 aa9.96□□□□□ -0.82
PDLIM5-221ENST00000542407 ESCO1Q5FWF5 840 aa9.96□□□□□ -0.82
PDLIM5-221ENST00000542407 ABTB2Q8N961 1025 aa9.96□□□□□ -0.82
PDLIM5-221ENST00000542407 NECTIN2Q92692 538 aa9.96□□□□□ -0.82
PDLIM5-221ENST00000542407 ORAI2Q96SN7 254 aa9.96□□□□□ -0.82
PDLIM5-221ENST00000542407 ALS2Q96Q42 1657 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms