RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 SIN3AQ96ST3 1273 aa16.9■□□□□ 0.3
COPA-205ENST00000541366 NSD2O96028 1365 aa16.89■□□□□ 0.3
COPA-205ENST00000541366 ATP10DQ9P241 1426 aa16.89■□□□□ 0.29
COPA-205ENST00000541366 COL23A1Q86Y22 540 aaPredicted RBP16.89■□□□□ 0.29
COPA-205ENST00000541366 TMC1Q8TDI8 760 aa16.89■□□□□ 0.29
COPA-205ENST00000541366 SLC12A5Q9H2X9 1139 aa16.89■□□□□ 0.29
COPA-205ENST00000541366 DOT1LQ8TEK3 1739 aa16.88■□□□□ 0.29
COPA-205ENST00000541366 LY75O60449 1722 aa16.87■□□□□ 0.29
COPA-205ENST00000541366 GRIN3BO60391 1043 aa16.87■□□□□ 0.29
COPA-205ENST00000541366 FBLN1P23142 703 aa16.87■□□□□ 0.29
COPA-205ENST00000541366 POTEDQ86YR6 584 aa16.87■□□□□ 0.29
COPA-205ENST00000541366 IP6K1Q92551 441 aa16.87■□□□□ 0.29
COPA-205ENST00000541366 CCNL1Q9UK58 526 aaPredicted RBP16.87■□□□□ 0.29
COPA-205ENST00000541366 ANKRD36BQ8N2N9 1353 aa16.87■□□□□ 0.29
COPA-205ENST00000541366 RGPD2P0DJD1 1756 aa16.85■□□□□ 0.29
COPA-205ENST00000541366 ZNF526Q8TF50 670 aaPredicted RBP16.85■□□□□ 0.29
COPA-205ENST00000541366 NEUROD1Q13562 356 aa16.84■□□□□ 0.29
COPA-205ENST00000541366 HDGFL2Q7Z4V5 671 aaPredicted RBP16.84■□□□□ 0.29
COPA-205ENST00000541366 WWC3Q9ULE0 1092 aa16.84■□□□□ 0.29
COPA-205ENST00000541366 A0A1W2PP64 1363 aa16.83■□□□□ 0.28
COPA-205ENST00000541366 MEGF6O75095 1541 aa16.83■□□□□ 0.28
COPA-205ENST00000541366 EDC4Q6P2E9 1401 aaKnown RBP16.83■□□□□ 0.28
COPA-205ENST00000541366 ZCRB1Q8TBF4 217 aaKnown RBP16.83■□□□□ 0.28
COPA-205ENST00000541366 GPBP1L1Q9HC44 474 aaPredicted RBP16.83■□□□□ 0.28
COPA-205ENST00000541366 FAM208AQ9UK61 1670 aaKnown RBP16.83■□□□□ 0.28
COPA-205ENST00000541366 MAP3K19Q56UN5 1328 aa16.81■□□□□ 0.28
COPA-205ENST00000541366 HSPA6P17066 643 aa16.8■□□□□ 0.28
COPA-205ENST00000541366 HOXC9P31274 260 aa16.8■□□□□ 0.28
COPA-205ENST00000541366 SMIM5Q71RC9 77 aa16.8■□□□□ 0.28
COPA-205ENST00000541366 USHBP1Q8N6Y0 703 aa16.8■□□□□ 0.28
COPA-205ENST00000541366 ADCY9O60503 1353 aa16.79■□□□□ 0.28
COPA-205ENST00000541366 USP47Q96K76 1375 aa16.79■□□□□ 0.28
COPA-205ENST00000541366 AMPHP49418 695 aa16.78■□□□□ 0.28
COPA-205ENST00000541366 AMIGO3Q86WK7 504 aa16.78■□□□□ 0.28
COPA-205ENST00000541366 TERF2IPQ9NYB0 399 aa16.78■□□□□ 0.28
COPA-205ENST00000541366 CD2APQ9Y5K6 639 aa16.78■□□□□ 0.28
COPA-205ENST00000541366 NBPF6Q5VWK0 638 aa16.77■□□□□ 0.28
COPA-205ENST00000541366 NBPF4Q96M43 638 aa16.77■□□□□ 0.28
COPA-205ENST00000541366 CARD11Q9BXL7 1154 aa16.77■□□□□ 0.28
COPA-205ENST00000541366 C5P01031 1676 aa16.77■□□□□ 0.28
COPA-205ENST00000541366 RRS1Q15050 365 aaKnown RBP16.75■□□□□ 0.27
COPA-205ENST00000541366 COG3Q96JB2 828 aa16.75■□□□□ 0.27
COPA-205ENST00000541366 TAF1LQ8IZX4 1826 aa16.74■□□□□ 0.27
COPA-205ENST00000541366 PALLDQ8WX93 1383 aa16.74■□□□□ 0.27
COPA-205ENST00000541366 IGSF1Q8N6C5 1336 aa16.73■□□□□ 0.27
COPA-205ENST00000541366 MPRIPQ6WCQ1 1025 aa16.73■□□□□ 0.27
COPA-205ENST00000541366 CNKSR2Q8WXI2 1034 aa16.73■□□□□ 0.27
COPA-205ENST00000541366 KIF3CO14782 793 aa16.72■□□□□ 0.27
COPA-205ENST00000541366 PHF14O94880 888 aa16.72■□□□□ 0.27
COPA-205ENST00000541366 TOGARAM1Q9Y4F4 1720 aa16.71■□□□□ 0.27
COPA-205ENST00000541366 FLAD1Q8NFF5 587 aa16.71■□□□□ 0.27
COPA-205ENST00000541366 RAPGEF4Q8WZA2 1011 aa16.71■□□□□ 0.27
COPA-205ENST00000541366 C4BP0C0L5 1744 aa16.7■□□□□ 0.26
COPA-205ENST00000541366 CYP27B1O15528 508 aa16.69■□□□□ 0.26
COPA-205ENST00000541366 TATP17735 454 aaPredicted RBP16.69■□□□□ 0.26
COPA-205ENST00000541366 AK7Q96M32 723 aa16.69■□□□□ 0.26
COPA-205ENST00000541366 GGNBP2Q9H3C7 697 aa16.69■□□□□ 0.26
COPA-205ENST00000541366 UBR3Q6ZT12 1888 aa16.68■□□□□ 0.26
COPA-205ENST00000541366 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.68■□□□□ 0.26
COPA-205ENST00000541366 CGNL1Q0VF96 1302 aa16.68■□□□□ 0.26
COPA-205ENST00000541366 NCBP3Q53F19 620 aaKnown RBP16.67■□□□□ 0.26
COPA-205ENST00000541366 HSP90AB2PQ58FF8 381 aa16.67■□□□□ 0.26
COPA-205ENST00000541366 TESK2Q96S53 571 aa16.67■□□□□ 0.26
COPA-205ENST00000541366 ITGB4P16144 1822 aa16.67■□□□□ 0.26
COPA-205ENST00000541366 PCDH11XQ9BZA7 1347 aa16.67■□□□□ 0.26
COPA-205ENST00000541366 PCDH11YQ9BZA8 1340 aa16.67■□□□□ 0.26
COPA-205ENST00000541366 RTL1A6NKG5 1358 aa16.66■□□□□ 0.26
COPA-205ENST00000541366 PUS7Q96PZ0 661 aaKnown RBP16.66■□□□□ 0.26
COPA-205ENST00000541366 FYB1O15117 783 aa16.65■□□□□ 0.26
COPA-205ENST00000541366 LINC00116Q8NCU8 138 aa16.65■□□□□ 0.26
COPA-205ENST00000541366 PIGBQ92521 554 aa16.65■□□□□ 0.26
COPA-205ENST00000541366 SMG6Q86US8 1419 aaKnown RBP16.63■□□□□ 0.25
COPA-205ENST00000541366 ST20-MTHFSA0A0A6YYL1 179 aa16.63■□□□□ 0.25
COPA-205ENST00000541366 DNAJC5GQ8N7S2 189 aa16.63■□□□□ 0.25
COPA-205ENST00000541366 SMARCC1Q92922 1105 aaPredicted RBP16.63■□□□□ 0.25
COPA-205ENST00000541366 MAP2P11137 1827 aaKnown RBP16.62■□□□□ 0.25
COPA-205ENST00000541366 INSRP06213 1382 aa16.62■□□□□ 0.25
COPA-205ENST00000541366 LOC102724428A0A0B4J2F2 783 aa16.61■□□□□ 0.25
COPA-205ENST00000541366 SSFA2P28290 1259 aa16.61■□□□□ 0.25
COPA-205ENST00000541366 APLP1P51693 650 aa16.61■□□□□ 0.25
COPA-205ENST00000541366 SIK1P57059 783 aa16.61■□□□□ 0.25
COPA-205ENST00000541366 ITPK1Q13572 414 aa16.61■□□□□ 0.25
COPA-205ENST00000541366 N4BP2Q86UW6 1770 aaPredicted RBP16.6■□□□□ 0.25
COPA-205ENST00000541366 GNPATO15228 680 aa16.6■□□□□ 0.25
COPA-205ENST00000541366 NMRK2Q9NPI5 230 aa16.6■□□□□ 0.25
COPA-205ENST00000541366 ASAP1Q9ULH1 1129 aa16.6■□□□□ 0.25
COPA-205ENST00000541366 PXDNLA1KZ92 1463 aa16.6■□□□□ 0.25
COPA-205ENST00000541366 CICQ96RK0 1608 aaPredicted RBP16.59■□□□□ 0.25
COPA-205ENST00000541366 A0A0G2JLW4 131 aa16.59■□□□□ 0.25
COPA-205ENST00000541366 MMP10P09238 476 aa16.59■□□□□ 0.25
COPA-205ENST00000541366 HTRA3P83110 453 aa16.59■□□□□ 0.25
COPA-205ENST00000541366 BCS1LQ9Y276 419 aa16.59■□□□□ 0.25
COPA-205ENST00000541366 KIAA1551Q9HCM1 1747 aa16.59■□□□□ 0.25
COPA-205ENST00000541366 PCNTO95613 3336 aa16.58■□□□□ 0.25
COPA-205ENST00000541366 TOMM70O94826 608 aa16.58■□□□□ 0.24
COPA-205ENST00000541366 HMGB2P26583 209 aaKnown RBP16.58■□□□□ 0.24
COPA-205ENST00000541366 EMILIN1Q9Y6C2 1016 aa16.58■□□□□ 0.24
COPA-205ENST00000541366 FLT4P35916 1363 aa16.58■□□□□ 0.24
COPA-205ENST00000541366 NSD3Q9BZ95 1437 aa16.58■□□□□ 0.24
COPA-205ENST00000541366 PKD1L3Q7Z443 1732 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms