RNA–Protein interactions for RNA: ENST00000540756.5

TTC3-225, Transcript of tetratricopeptide repeat domain 3, human

TSL 2 BASIC

Gene TTC3, Length 2,025 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-225	ENST00000540756	FRAT1	Q92837	279 aa	Predicted RBP	31.72	■■■□□ 2.67
TTC3-225	ENST00000540756	GNAT3	A8MTJ3	354 aa		31.71	■■■□□ 2.67
TTC3-225	ENST00000540756	NLRP2	Q9NX02	1062 aa		31.71	■■■□□ 2.67
TTC3-225	ENST00000540756	MIS18A	Q9NYP9	233 aa		31.71	■■■□□ 2.67
TTC3-225	ENST00000540756	LMO7	Q8WWI1	1683 aa		31.7	■■■□□ 2.67
TTC3-225	ENST00000540756	ELL2	O00472	640 aa	Predicted RBP	31.7	■■■□□ 2.67
TTC3-225	ENST00000540756	PRDM11	Q9NQV5	511 aa		31.7	■■■□□ 2.67
TTC3-225	ENST00000540756	CT47B1	P0C2W7	299 aa	Predicted RBP	31.7	■■■□□ 2.66
TTC3-225	ENST00000540756	SSH1	Q8WYL5	1049 aa		31.69	■■■□□ 2.66
TTC3-225	ENST00000540756	MAP3K5	Q99683	1374 aa		31.68	■■■□□ 2.66
TTC3-225	ENST00000540756	CHL1	O00533	1208 aa		31.68	■■■□□ 2.66
TTC3-225	ENST00000540756	CSB-PGBD3	P0DP91	1061 aa		31.68	■■■□□ 2.66
TTC3-225	ENST00000540756	IL17RE	Q8NFR9	667 aa		31.68	■■■□□ 2.66
TTC3-225	ENST00000540756	TNN	Q9UQP3	1299 aa		31.68	■■■□□ 2.66
TTC3-225	ENST00000540756	C8orf58	Q8NAV2	365 aa		31.68	■■■□□ 2.66
TTC3-225	ENST00000540756	KRT24	Q2M2I5	525 aa		31.66	■■■□□ 2.66
TTC3-225	ENST00000540756	AHDC1	Q5TGY3	1603 aa	Predicted RBP	31.65	■■■□□ 2.66
TTC3-225	ENST00000540756	VAMP4	O75379	141 aa		31.65	■■■□□ 2.66
TTC3-225	ENST00000540756	CANX	P27824	592 aa	Known RBP	31.65	■■■□□ 2.66
TTC3-225	ENST00000540756	SMC4	Q9NTJ3	1288 aa		31.65	■■■□□ 2.66
TTC3-225	ENST00000540756	ABCC6	O95255	1503 aa		31.65	■■■□□ 2.66
TTC3-225	ENST00000540756	FAM208A	Q9UK61	1670 aa	Known RBP	31.65	■■■□□ 2.66
TTC3-225	ENST00000540756	HTATSF1	O43719	755 aa	Known RBP	31.65	■■■□□ 2.66
TTC3-225	ENST00000540756	PANK1	Q8TE04	598 aa		31.63	■■■□□ 2.65
TTC3-225	ENST00000540756	PIP4K2B	P78356	416 aa		31.63	■■■□□ 2.65
TTC3-225	ENST00000540756	LRRC37A3	O60309	1634 aa		31.62	■■■□□ 2.65
TTC3-225	ENST00000540756	PLEKHO1	Q53GL0	409 aa	Predicted RBP	31.62	■■■□□ 2.65
TTC3-225	ENST00000540756	ZNF530	Q6P9A1	599 aa	Predicted RBP	31.62	■■■□□ 2.65
TTC3-225	ENST00000540756	CCDC136	Q96JN2	1154 aa		31.62	■■■□□ 2.65
TTC3-225	ENST00000540756	LGR6	Q9HBX8	967 aa		31.61	■■■□□ 2.65
TTC3-225	ENST00000540756	TWISTNB	Q3B726	338 aa	Predicted RBP	31.6	■■■□□ 2.65
TTC3-225	ENST00000540756	TCERG1	O14776	1098 aa	Known RBP	31.59	■■■□□ 2.65
TTC3-225	ENST00000540756	RLBP1	P12271	317 aa		31.59	■■■□□ 2.65
TTC3-225	ENST00000540756	AMOT	Q4VCS5	1084 aa		31.58	■■■□□ 2.65
TTC3-225	ENST00000540756	AEBP2	Q6ZN18	517 aa	Predicted RBP	31.58	■■■□□ 2.65
TTC3-225	ENST00000540756	MEGF6	O75095	1541 aa		31.58	■■■□□ 2.65
TTC3-225	ENST00000540756	CLUAP1	Q96AJ1	413 aa		31.58	■■■□□ 2.65
TTC3-225	ENST00000540756	TSPYL4	Q9UJ04	414 aa		31.58	■■■□□ 2.65
TTC3-225	ENST00000540756	PDE3A	Q14432	1141 aa		31.57	■■■□□ 2.64
TTC3-225	ENST00000540756	MPRIP	Q6WCQ1	1025 aa		31.56	■■■□□ 2.64
TTC3-225	ENST00000540756	RAPGEF4	Q8WZA2	1011 aa		31.56	■■■□□ 2.64
TTC3-225	ENST00000540756	COL5A2	P05997	1499 aa	Predicted RBP	31.56	■■■□□ 2.64
TTC3-225	ENST00000540756	AKAP4	Q5JQC9	854 aa		31.56	■■■□□ 2.64
TTC3-225	ENST00000540756	NOB1	Q9ULX3	412 aa	Known RBP	31.56	■■■□□ 2.64
TTC3-225	ENST00000540756	PHLPP1	O60346	1717 aa		31.55	■■■□□ 2.64
TTC3-225	ENST00000540756	TOM1	O60784	492 aa		31.55	■■■□□ 2.64
TTC3-225	ENST00000540756	COG6	Q9Y2V7	657 aa		31.55	■■■□□ 2.64
TTC3-225	ENST00000540756	CEMIP	Q8WUJ3	1361 aa		31.54	■■■□□ 2.64
TTC3-225	ENST00000540756	ALDH1L2	Q3SY69	923 aa		31.54	■■■□□ 2.64
TTC3-225	ENST00000540756	WDR17	Q8IZU2	1322 aa		31.54	■■■□□ 2.64
TTC3-225	ENST00000540756	VIRMA	Q69YN4	1812 aa	Known RBP	31.53	■■■□□ 2.64
TTC3-225	ENST00000540756	ZKSCAN2	Q63HK3	967 aa		31.53	■■■□□ 2.64
TTC3-225	ENST00000540756	STRN4	Q9NRL3	753 aa		31.53	■■■□□ 2.64
TTC3-225	ENST00000540756	COL16A1	Q07092	1604 aa	Predicted RBP	31.52	■■■□□ 2.64
TTC3-225	ENST00000540756	TOM1L2	Q6ZVM7	507 aa		31.52	■■■□□ 2.64
TTC3-225	ENST00000540756	C1orf141	Q5JVX7	400 aa		31.51	■■■□□ 2.64
TTC3-225	ENST00000540756	TRIM27	P14373	513 aa		31.51	■■■□□ 2.63
TTC3-225	ENST00000540756	TAT	P17735	454 aa	Predicted RBP	31.51	■■■□□ 2.63
TTC3-225	ENST00000540756	TAF7	Q15545	349 aa	Predicted RBP	31.51	■■■□□ 2.63
TTC3-225	ENST00000540756	UBAP1L	F5GYI3	381 aa		31.5	■■■□□ 2.63
TTC3-225	ENST00000540756	LARP1	Q6PKG0	1096 aa	Known RBP	31.5	■■■□□ 2.63
TTC3-225	ENST00000540756	MRPL50	Q8N5N7	158 aa	Known RBP	31.5	■■■□□ 2.63
TTC3-225	ENST00000540756	ZNF428	Q96B54	188 aa		31.5	■■■□□ 2.63
TTC3-225	ENST00000540756	COL22A1	Q8NFW1	1626 aa	Predicted RBP	31.49	■■■□□ 2.63
TTC3-225	ENST00000540756	RNMT	O43148	476 aa	Known RBP	31.48	■■■□□ 2.63
TTC3-225	ENST00000540756	EVA1C	P58658	441 aa		31.46	■■■□□ 2.63
TTC3-225	ENST00000540756	ATF7IP	Q6VMQ6	1270 aa		31.46	■■■□□ 2.63
TTC3-225	ENST00000540756	BTG4	Q9NY30	223 aa		31.46	■■■□□ 2.63
TTC3-225	ENST00000540756	BRPF1	P55201	1214 aa	Predicted RBP	31.44	■■■□□ 2.62
TTC3-225	ENST00000540756	DZIP1L	Q8IYY4	767 aa	Known RBP	31.44	■■■□□ 2.62
TTC3-225	ENST00000540756	KIF16B	Q96L93	1317 aa		31.44	■■■□□ 2.62
TTC3-225	ENST00000540756	FTSJ3	Q8IY81	847 aa	Known RBP	31.42	■■■□□ 2.62
TTC3-225	ENST00000540756	SPG7	Q9UQ90	795 aa		31.42	■■■□□ 2.62
TTC3-225	ENST00000540756	KCNQ3	O43525	872 aa		31.42	■■■□□ 2.62
TTC3-225	ENST00000540756	PHKG2	P15735	406 aa		31.41	■■■□□ 2.62
TTC3-225	ENST00000540756	TEF	Q10587	303 aa		31.41	■■■□□ 2.62
TTC3-225	ENST00000540756	CYP27B1	O15528	508 aa		31.41	■■■□□ 2.62
TTC3-225	ENST00000540756	CARD10	Q9BWT7	1032 aa		31.41	■■■□□ 2.62
TTC3-225	ENST00000540756	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	31.41	■■■□□ 2.62	3e-8	■■■■□ 19.3
TTC3-225	ENST00000540756	USP35	Q9P2H5	1018 aa		31.41	■■■□□ 2.62
TTC3-225	ENST00000540756	PKD1L3	Q7Z443	1732 aa		31.4	■■■□□ 2.62
TTC3-225	ENST00000540756	ADAMTS2	O95450	1211 aa		31.39	■■■□□ 2.62
TTC3-225	ENST00000540756	BABAM1	Q9NWV8	329 aa		31.39	■■■□□ 2.62
TTC3-225	ENST00000540756	OVOS2	A0A0G2JMS6	1433 aa		31.38	■■■□□ 2.61
TTC3-225	ENST00000540756	KDM6A	O15550	1401 aa	Predicted RBP	31.38	■■■□□ 2.61
TTC3-225	ENST00000540756	IPO8	O15397	1037 aa	Known RBP	31.38	■■■□□ 2.61
TTC3-225	ENST00000540756	MVP	Q14764	893 aa	Known RBP	31.38	■■■□□ 2.61
TTC3-225	ENST00000540756	COL14A1	Q05707	1796 aa	Known RBP	31.38	■■■□□ 2.61
TTC3-225	ENST00000540756	ADAMTS7	Q9UKP4	1686 aa		31.38	■■■□□ 2.61
TTC3-225	ENST00000540756	KDM3B	Q7LBC6	1761 aa		31.37	■■■□□ 2.61
TTC3-225	ENST00000540756	BTBD11	A6QL63	1104 aa		31.37	■■■□□ 2.61
TTC3-225	ENST00000540756	IFNL2	Q8IZJ0	200 aa		31.36	■■■□□ 2.61
TTC3-225	ENST00000540756	TMEM57	Q8N5G2	664 aa		31.36	■■■□□ 2.61
TTC3-225	ENST00000540756	SCN11A	Q9UI33	1791 aa		31.36	■■■□□ 2.61
TTC3-225	ENST00000540756	NUTM2B	A6NNL0	878 aa	Predicted RBP	31.36	■■■□□ 2.61
TTC3-225	ENST00000540756	NUTM2E	B1AL46	878 aa	Predicted RBP	31.36	■■■□□ 2.61
TTC3-225	ENST00000540756	NUTM2A	Q8IVF1	878 aa	Predicted RBP	31.36	■■■□□ 2.61
TTC3-225	ENST00000540756	PELP1	Q8IZL8	1130 aa	Known RBP	31.36	■■■□□ 2.61
TTC3-225	ENST00000540756	SIPA1L3	O60292	1781 aa	Predicted RBP	31.35	■■■□□ 2.61
TTC3-225	ENST00000540756	NECTIN2	Q92692	538 aa		31.35	■■■□□ 2.61

Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms