RNA–Protein interactions for RNA: ENST00000539827.5

HOMER3-204, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-204ENST00000539827 CHL1O00533 1208 aa28.8■■■□□ 2.2
HOMER3-204ENST00000539827 TNS3Q68CZ2 1445 aa28.79■■■□□ 2.2
HOMER3-204ENST00000539827 TWISTNBQ3B726 338 aaPredicted RBP28.79■■■□□ 2.2
HOMER3-204ENST00000539827 ANKRD24Q8TF21 1146 aa28.79■■■□□ 2.2
HOMER3-204ENST00000539827 AXIN2Q9Y2T1 843 aa28.79■■■□□ 2.2
HOMER3-204ENST00000539827 DZIP1LQ8IYY4 767 aaKnown RBP28.79■■■□□ 2.2
HOMER3-204ENST00000539827 CABLES1Q8TDN4 633 aa28.78■■■□□ 2.2
HOMER3-204ENST00000539827 ZNF428Q96B54 188 aa28.78■■■□□ 2.2
HOMER3-204ENST00000539827 SLAIN2Q9P270 581 aa28.78■■■□□ 2.2
HOMER3-204ENST00000539827 FTSJ3Q8IY81 847 aaKnown RBP28.77■■■□□ 2.2
HOMER3-204ENST00000539827 SPATA31A3Q5VYP0 1347 aa28.77■■■□□ 2.2
HOMER3-204ENST00000539827 KDM2BQ8NHM5 1336 aa28.77■■■□□ 2.2
HOMER3-204ENST00000539827 TRIM27P14373 513 aa28.77■■■□□ 2.2
HOMER3-204ENST00000539827 GNAT3A8MTJ3 354 aa28.76■■■□□ 2.19
HOMER3-204ENST00000539827 TCERG1O14776 1098 aaKnown RBP28.76■■■□□ 2.19
HOMER3-204ENST00000539827 ATF7IPQ6VMQ6 1270 aa28.76■■■□□ 2.19
HOMER3-204ENST00000539827 MS4A1P11836 297 aa28.75■■■□□ 2.19
HOMER3-204ENST00000539827 MIS18AQ9NYP9 233 aa28.75■■■□□ 2.19
HOMER3-204ENST00000539827 KIF16BQ96L93 1317 aa28.75■■■□□ 2.19
HOMER3-204ENST00000539827 HTATSF1O43719 755 aaKnown RBP28.75■■■□□ 2.19
HOMER3-204ENST00000539827 MRPL50Q8N5N7 158 aaKnown RBP28.75■■■□□ 2.19
HOMER3-204ENST00000539827 RGPD5Q99666 1765 aa28.74■■■□□ 2.19
HOMER3-204ENST00000539827 MVPQ14764 893 aaKnown RBP28.73■■■□□ 2.19
HOMER3-204ENST00000539827 KRT24Q2M2I5 525 aa28.73■■■□□ 2.19
HOMER3-204ENST00000539827 CENPQQ7L2Z9 268 aaPredicted RBP28.73■■■□□ 2.19
HOMER3-204ENST00000539827 MAP3K5Q99683 1374 aa28.73■■■□□ 2.19
HOMER3-204ENST00000539827 IPO8O15397 1037 aaKnown RBP28.72■■■□□ 2.19
HOMER3-204ENST00000539827 BRPF1P55201 1214 aaPredicted RBP28.71■■■□□ 2.19
HOMER3-204ENST00000539827 TSPYL4Q9UJ04 414 aa28.7■■■□□ 2.19
HOMER3-204ENST00000539827 RBM19Q9Y4C8 960 aaKnown RBP28.7■■■□□ 2.19
HOMER3-204ENST00000539827 IL17REQ8NFR9 667 aa28.7■■■□□ 2.18
HOMER3-204ENST00000539827 SKAP1Q86WV1 359 aa28.69■■■□□ 2.18
HOMER3-204ENST00000539827 IGHDP01880 384 aa28.67■■■□□ 2.18
HOMER3-204ENST00000539827 TMEM57Q8N5G2 664 aa28.67■■■□□ 2.18
HOMER3-204ENST00000539827 LRRC37A3O60309 1634 aa28.66■■■□□ 2.18
HOMER3-204ENST00000539827 ITPRIPQ8IWB1 547 aa28.66■■■□□ 2.18
HOMER3-204ENST00000539827 KIAA0232Q92628 1395 aa28.66■■■□□ 2.18
HOMER3-204ENST00000539827 NCAPD2Q15021 1401 aa28.66■■■□□ 2.18
HOMER3-204ENST00000539827 CRYBG1Q9Y4K1 1723 aa28.66■■■□□ 2.18
HOMER3-204ENST00000539827 CHRNA2Q15822 529 aa28.66■■■□□ 2.18
HOMER3-204ENST00000539827 ERBB3P21860 1342 aa28.66■■■□□ 2.18
HOMER3-204ENST00000539827 AAMPQ13685 434 aa28.65■■■□□ 2.18
HOMER3-204ENST00000539827 SOS2Q07890 1332 aaPredicted RBP28.65■■■□□ 2.18
HOMER3-204ENST00000539827 PLEKHO1Q53GL0 409 aaPredicted RBP28.64■■■□□ 2.18
HOMER3-204ENST00000539827 COL18A1P39060 1754 aa28.64■■■□□ 2.18
HOMER3-204ENST00000539827 PCDHB15Q9Y5E8 787 aa28.64■■■□□ 2.17
HOMER3-204ENST00000539827 CAMTA1Q9Y6Y1 1673 aa28.63■■■□□ 2.17
HOMER3-204ENST00000539827 ZNF530Q6P9A1 599 aaPredicted RBP28.63■■■□□ 2.17
HOMER3-204ENST00000539827 ARHGAP45Q92619 1136 aa28.61■■■□□ 2.17
HOMER3-204ENST00000539827 DDX19BQ9UMR2 479 aa28.61■■■□□ 2.17
HOMER3-204ENST00000539827 NLRP2Q9NX02 1062 aa28.61■■■□□ 2.17
HOMER3-204ENST00000539827 TAF7Q15545 349 aaPredicted RBP28.6■■■□□ 2.17
HOMER3-204ENST00000539827 AMOTQ4VCS5 1084 aa28.6■■■□□ 2.17
HOMER3-204ENST00000539827 LGR6Q9HBX8 967 aa28.6■■■□□ 2.17
HOMER3-204ENST00000539827 HAP1P54257 671 aaPredicted RBP28.59■■■□□ 2.17
HOMER3-204ENST00000539827 AKAP4Q5JQC9 854 aa28.59■■■□□ 2.17
HOMER3-204ENST00000539827 CSB-PGBD3P0DP91 1061 aa28.58■■■□□ 2.17
HOMER3-204ENST00000539827 LMO7Q8WWI1 1683 aa28.57■■■□□ 2.16
HOMER3-204ENST00000539827 CPDO75976 1380 aa28.56■■■□□ 2.16
HOMER3-204ENST00000539827 CEMIPQ8WUJ3 1361 aa28.55■■■□□ 2.16
HOMER3-204ENST00000539827 MPRIPQ6WCQ1 1025 aa28.55■■■□□ 2.16
HOMER3-204ENST00000539827 C1orf141Q5JVX7 400 aa28.54■■■□□ 2.16
HOMER3-204ENST00000539827 API5Q9BZZ5 524 aaKnown RBP28.54■■■□□ 2.16
HOMER3-204ENST00000539827 BABAM1Q9NWV8 329 aa28.53■■■□□ 2.16
HOMER3-204ENST00000539827 NHSL1Q5SYE7 1610 aa28.52■■■□□ 2.16
HOMER3-204ENST00000539827 ABCC6O95255 1503 aa28.52■■■□□ 2.16
HOMER3-204ENST00000539827 ABCC4O15439 1325 aa28.52■■■□□ 2.16
HOMER3-204ENST00000539827 RAPGEF4Q8WZA2 1011 aa28.51■■■□□ 2.16
HOMER3-204ENST00000539827 RNMTO43148 476 aaKnown RBP28.51■■■□□ 2.15
HOMER3-204ENST00000539827 ZBTB40Q9NUA8 1239 aa28.51■■■□□ 2.15
HOMER3-204ENST00000539827 FAM208AQ9UK61 1670 aaKnown RBP28.51■■■□□ 2.15
HOMER3-204ENST00000539827 RWDD1Q9H446 243 aaPredicted RBP28.5■■■□□ 2.15
HOMER3-204ENST00000539827 PRDM11Q9NQV5 511 aa28.5■■■□□ 2.15
HOMER3-204ENST00000539827 SLC4A2P04920 1241 aa28.5■■■□□ 2.15
HOMER3-204ENST00000539827 TATP17735 454 aaPredicted RBP28.49■■■□□ 2.15
HOMER3-204ENST00000539827 TEFQ10587 303 aa28.48■■■□□ 2.15
HOMER3-204ENST00000539827 RGS3P49796 1198 aa28.48■■■□□ 2.15
HOMER3-204ENST00000539827 ZBTB7BO15156 539 aaPredicted RBP28.46■■■□□ 2.15
HOMER3-204ENST00000539827 NECTIN2Q92692 538 aa28.46■■■□□ 2.15
HOMER3-204ENST00000539827 MEGF6O75095 1541 aa28.46■■■□□ 2.15
HOMER3-204ENST00000539827 VIRMAQ69YN4 1812 aaKnown RBP28.45■■■□□ 2.15
HOMER3-204ENST00000539827 ABCA3Q99758 1704 aa28.45■■■□□ 2.15
HOMER3-204ENST00000539827 G2E3Q7L622 706 aa28.45■■■□□ 2.14
HOMER3-204ENST00000539827 KCNQ3O43525 872 aa28.44■■■□□ 2.14
HOMER3-204ENST00000539827 RGS12O14924 1447 aa28.44■■■□□ 2.14
HOMER3-204ENST00000539827 PTPRCP08575 1304 aa28.43■■■□□ 2.14
HOMER3-204ENST00000539827 BTBD11A6QL63 1104 aa28.43■■■□□ 2.14
HOMER3-204ENST00000539827 STK31Q9BXU1 1019 aa28.42■■■□□ 2.14
HOMER3-204ENST00000539827 PDE4AP27815 886 aa28.42■■■□□ 2.14
HOMER3-204ENST00000539827 EIF4A1P60842 406 aaKnown RBP28.42■■■□□ 2.14
HOMER3-204ENST00000539827 CCDC30Q5VVM6 783 aa28.42■■■□□ 2.14
HOMER3-204ENST00000539827 SPG7Q9UQ90 795 aa28.42■■■□□ 2.14
HOMER3-204ENST00000539827 KDM3BQ7LBC6 1761 aa28.42■■■□□ 2.14
HOMER3-204ENST00000539827 LTBP4Q8N2S1 1624 aa28.41■■■□□ 2.14
HOMER3-204ENST00000539827 CHMP4BQ9H444 224 aaKnown RBP28.41■■■□□ 2.14
HOMER3-204ENST00000539827 HDAC1Q13547 482 aaPredicted RBP28.4■■■□□ 2.14
HOMER3-204ENST00000539827 C1orf115Q9H7X2 142 aa28.4■■■□□ 2.14
HOMER3-204ENST00000539827 OVOS2A0A0G2JMS6 1433 aa28.4■■■□□ 2.14
HOMER3-204ENST00000539827 SOS1Q07889 1333 aaPredicted RBP28.4■■■□□ 2.14
HOMER3-204ENST00000539827 PDZRN3Q9UPQ7 1066 aa28.39■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms