RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 POLKQ9UBT6 870 aa15.87■□□□□ 0.13
RTN3-209ENST00000538995 KCNQ2O43526 872 aa15.86■□□□□ 0.13
RTN3-209ENST00000538995 KNSTRNQ9Y448 316 aa15.86■□□□□ 0.13
RTN3-209ENST00000538995 RGPD2P0DJD1 1756 aa15.85■□□□□ 0.13
RTN3-209ENST00000538995 PPM1GO15355 546 aaPredicted RBP15.85■□□□□ 0.13
RTN3-209ENST00000538995 TATP17735 454 aaPredicted RBP15.85■□□□□ 0.13
RTN3-209ENST00000538995 USHBP1Q8N6Y0 703 aa15.85■□□□□ 0.13
RTN3-209ENST00000538995 DDX54Q8TDD1 881 aaKnown RBP15.85■□□□□ 0.13
RTN3-209ENST00000538995 ACSBG1Q96GR2 724 aa15.85■□□□□ 0.13
RTN3-209ENST00000538995 PLEKHG2Q9H7P9 1386 aa15.85■□□□□ 0.13
RTN3-209ENST00000538995 SHANK3Q9BYB0 1731 aa15.83■□□□□ 0.13
RTN3-209ENST00000538995 TXNRD1Q16881 649 aa15.83■□□□□ 0.12
RTN3-209ENST00000538995 PROM2Q8N271 834 aa15.83■□□□□ 0.12
RTN3-209ENST00000538995 PCDH11XQ9BZA7 1347 aa15.83■□□□□ 0.12
RTN3-209ENST00000538995 PCDH11YQ9BZA8 1340 aa15.83■□□□□ 0.12
RTN3-209ENST00000538995 MAP2P11137 1827 aaKnown RBP15.81■□□□□ 0.12
RTN3-209ENST00000538995 TNNT2P45379 298 aaPredicted RBP15.81■□□□□ 0.12
RTN3-209ENST00000538995 AMER1Q5JTC6 1135 aaPredicted RBP15.81■□□□□ 0.12
RTN3-209ENST00000538995 MORC1Q86VD1 984 aa15.81■□□□□ 0.12
RTN3-209ENST00000538995 ANO8Q9HCE9 1232 aaPredicted RBP15.81■□□□□ 0.12
RTN3-209ENST00000538995 BTAF1O14981 1849 aa15.8■□□□□ 0.12
RTN3-209ENST00000538995 EYA1Q99502 592 aa15.8■□□□□ 0.12
RTN3-209ENST00000538995 PKD1L3Q7Z443 1732 aa15.8■□□□□ 0.12
RTN3-209ENST00000538995 EIF4A2Q14240 407 aaKnown RBP15.79■□□□□ 0.12
RTN3-209ENST00000538995 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.79■□□□□ 0.12
RTN3-209ENST00000538995 DOT1LQ8TEK3 1739 aa15.79■□□□□ 0.12
RTN3-209ENST00000538995 IGSF1Q8N6C5 1336 aa15.78■□□□□ 0.12
RTN3-209ENST00000538995 PRIM1P49642 420 aaKnown RBP15.78■□□□□ 0.12
RTN3-209ENST00000538995 SLC27A3Q5K4L6 730 aa15.78■□□□□ 0.12
RTN3-209ENST00000538995 STK32BQ9NY57 414 aa15.78■□□□□ 0.12
RTN3-209ENST00000538995 NPC1L1Q9UHC9 1359 aa15.77■□□□□ 0.12
RTN3-209ENST00000538995 PAPPAQ13219 1627 aa15.77■□□□□ 0.12
RTN3-209ENST00000538995 PER1O15534 1290 aaPredicted RBP15.77■□□□□ 0.12
RTN3-209ENST00000538995 SYTL4Q96C24 671 aaPredicted RBP15.77■□□□□ 0.12
RTN3-209ENST00000538995 SPG7Q9UQ90 795 aa15.77■□□□□ 0.12
RTN3-209ENST00000538995 CYP27B1O15528 508 aa15.76■□□□□ 0.11
RTN3-209ENST00000538995 SLC15A2Q16348 729 aa15.75■□□□□ 0.11
RTN3-209ENST00000538995 NKX1-1Q15270 411 aaPredicted RBP15.74■□□□□ 0.11
RTN3-209ENST00000538995 SPON1Q9HCB6 807 aa15.74■□□□□ 0.11
RTN3-209ENST00000538995 CASZ1Q86V15 1759 aa15.74■□□□□ 0.11
RTN3-209ENST00000538995 LRRC4BQ9NT99 713 aa15.72■□□□□ 0.11
RTN3-209ENST00000538995 HMGB2P26583 209 aaKnown RBP15.71■□□□□ 0.11
RTN3-209ENST00000538995 IFNL2Q8IZJ0 200 aa15.71■□□□□ 0.11
RTN3-209ENST00000538995 KDRP35968 1356 aa15.71■□□□□ 0.11
RTN3-209ENST00000538995 LY75O60449 1722 aa15.71■□□□□ 0.1
RTN3-209ENST00000538995 KAT6BQ8WYB5 2073 aa15.71■□□□□ 0.1
RTN3-209ENST00000538995 PHKG2P15735 406 aa15.7■□□□□ 0.1
RTN3-209ENST00000538995 TOGARAM1Q9Y4F4 1720 aa15.69■□□□□ 0.1
RTN3-209ENST00000538995 IL13P35225 146 aa15.69■□□□□ 0.1
RTN3-209ENST00000538995 ZNF827Q17R98 1081 aa15.69■□□□□ 0.1
RTN3-209ENST00000538995 AMOTQ4VCS5 1084 aa15.69■□□□□ 0.1
RTN3-209ENST00000538995 CC2D1BQ5T0F9 858 aaKnown RBP15.69■□□□□ 0.1
RTN3-209ENST00000538995 AKT1S1Q96B36 256 aa15.69■□□□□ 0.1
RTN3-209ENST00000538995 CCNL1Q9UK58 526 aaPredicted RBP15.69■□□□□ 0.1
RTN3-209ENST00000538995 PALLDQ8WX93 1383 aa15.68■□□□□ 0.1
RTN3-209ENST00000538995 HSP90AB1P08238 724 aaKnown RBP15.68■□□□□ 0.1
RTN3-209ENST00000538995 MTHFSP49914 203 aa15.68■□□□□ 0.1
RTN3-209ENST00000538995 PLEKHO1Q53GL0 409 aaPredicted RBP15.68■□□□□ 0.1
RTN3-209ENST00000538995 SMARCC1Q92922 1105 aaPredicted RBP15.68■□□□□ 0.1
RTN3-209ENST00000538995 MPRIPQ6WCQ1 1025 aa15.67■□□□□ 0.1
RTN3-209ENST00000538995 PDGFDQ9GZP0 370 aaPredicted RBP15.67■□□□□ 0.1
RTN3-209ENST00000538995 MTFR1LQ9H019 292 aa15.67■□□□□ 0.1
RTN3-209ENST00000538995 AEBP1Q8IUX7 1158 aa15.66■□□□□ 0.1
RTN3-209ENST00000538995 PIGBQ92521 554 aa15.66■□□□□ 0.1
RTN3-209ENST00000538995 PPP1R1BQ9UD71 204 aaPredicted RBP15.66■□□□□ 0.1
RTN3-209ENST00000538995 QSER1Q2KHR3 1735 aa15.65■□□□□ 0.1
RTN3-209ENST00000538995 ZBTB7AO95365 584 aa15.65■□□□□ 0.1
RTN3-209ENST00000538995 SULT6B1Q6IMI4 303 aa15.65■□□□□ 0.1
RTN3-209ENST00000538995 DCAF5Q96JK2 942 aa15.65■□□□□ 0.1
RTN3-209ENST00000538995 TMOD3Q9NYL9 352 aa15.65■□□□□ 0.1
RTN3-209ENST00000538995 PTGER2P43116 358 aa15.64■□□□□ 0.09
RTN3-209ENST00000538995 ZNF530Q6P9A1 599 aaPredicted RBP15.64■□□□□ 0.09
RTN3-209ENST00000538995 SLC16A10Q8TF71 515 aa15.64■□□□□ 0.09
RTN3-209ENST00000538995 ERVV-2B6SEH9 535 aa15.63■□□□□ 0.09
RTN3-209ENST00000538995 DIAPH1O60610 1272 aaKnown RBP15.63■□□□□ 0.09
RTN3-209ENST00000538995 KCNQ4P56696 695 aa15.63■□□□□ 0.09
RTN3-209ENST00000538995 TFCP2L1Q9NZI6 479 aa15.63■□□□□ 0.09
RTN3-209ENST00000538995 COL3A1P02461 1466 aaPredicted RBP15.63■□□□□ 0.09
RTN3-209ENST00000538995 ITGB4P16144 1822 aa15.63■□□□□ 0.09
RTN3-209ENST00000538995 PNPLA7Q6ZV29 1317 aa15.63■□□□□ 0.09
RTN3-209ENST00000538995 C1orf141Q5JVX7 400 aa15.62■□□□□ 0.09
RTN3-209ENST00000538995 SGIP1Q9BQI5 828 aa15.62■□□□□ 0.09
RTN3-209ENST00000538995 KDM6AO15550 1401 aaPredicted RBP15.61■□□□□ 0.09
RTN3-209ENST00000538995 C5P01031 1676 aa15.61■□□□□ 0.09
RTN3-209ENST00000538995 ATF5Q9Y2D1 282 aaPredicted RBP15.61■□□□□ 0.09
RTN3-209ENST00000538995 LOC102724428A0A0B4J2F2 783 aa15.59■□□□□ 0.09
RTN3-209ENST00000538995 SIK1P57059 783 aa15.59■□□□□ 0.09
RTN3-209ENST00000538995 FLAD1Q8NFF5 587 aa15.59■□□□□ 0.09
RTN3-209ENST00000538995 AKAP4Q5JQC9 854 aa15.58■□□□□ 0.08
RTN3-209ENST00000538995 ATG3Q9NT62 314 aa15.58■□□□□ 0.08
RTN3-209ENST00000538995 ASAP1Q9ULH1 1129 aa15.58■□□□□ 0.08
RTN3-209ENST00000538995 TUBGCP6Q96RT7 1819 aa15.58■□□□□ 0.08
RTN3-209ENST00000538995 MAP3K5Q99683 1374 aa15.58■□□□□ 0.08
RTN3-209ENST00000538995 C4BP0C0L5 1744 aa15.57■□□□□ 0.08
RTN3-209ENST00000538995 HMOX1P09601 288 aa15.57■□□□□ 0.08
RTN3-209ENST00000538995 CABP4P57796 275 aa15.57■□□□□ 0.08
RTN3-209ENST00000538995 CFAP53Q96M91 514 aa15.57■□□□□ 0.08
RTN3-209ENST00000538995 TAF1LQ8IZX4 1826 aa15.57■□□□□ 0.08
RTN3-209ENST00000538995 POLD1P28340 1107 aa15.56■□□□□ 0.08
RTN3-209ENST00000538995 AK7Q96M32 723 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms