RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 TAF7Q15545 349 aaPredicted RBP9.18□□□□□ -0.94
MSH6-209ENST00000538136 AMOTQ4VCS5 1084 aa9.18□□□□□ -0.94
MSH6-209ENST00000538136 SAMD1Q6SPF0 538 aaPredicted RBP9.18□□□□□ -0.94
MSH6-209ENST00000538136 KIF6Q6ZMV9 814 aa9.18□□□□□ -0.94
MSH6-209ENST00000538136 ZNF496Q96IT1 587 aaPredicted RBP9.18□□□□□ -0.94
MSH6-209ENST00000538136 E9PCH4 1651 aa9.18□□□□□ -0.94
MSH6-209ENST00000538136 PLXNC1O60486 1568 aa9.17□□□□□ -0.94
MSH6-209ENST00000538136 HSP90AB1P08238 724 aaKnown RBP9.17□□□□□ -0.94
MSH6-209ENST00000538136 GNAI1P63096 354 aa9.17□□□□□ -0.94
MSH6-209ENST00000538136 RCAN3Q9UKA8 241 aa9.17□□□□□ -0.94
MSH6-209ENST00000538136 ZFYVE9O95405 1425 aa9.17□□□□□ -0.94
MSH6-209ENST00000538136 KCNJ4P48050 445 aa9.17□□□□□ -0.94
MSH6-209ENST00000538136 GPR162Q16538 588 aa9.17□□□□□ -0.94
MSH6-209ENST00000538136 GCC2Q8IWJ2 1684 aa9.16□□□□□ -0.94
MSH6-209ENST00000538136 RTCBQ9Y3I0 505 aaKnown RBP9.16□□□□□ -0.94
MSH6-209ENST00000538136 WDR17Q8IZU2 1322 aa9.16□□□□□ -0.94
MSH6-209ENST00000538136 SYNMO15061 1565 aa9.16□□□□□ -0.94
MSH6-209ENST00000538136 USP16Q9Y5T5 823 aa9.16□□□□□ -0.94
MSH6-209ENST00000538136 ADGRB3O60242 1522 aa9.16□□□□□ -0.94
MSH6-209ENST00000538136 CYP27B1O15528 508 aa9.16□□□□□ -0.94
MSH6-209ENST00000538136 JAG2Q9Y219 1238 aa9.16□□□□□ -0.94
MSH6-209ENST00000538136 PIK3R4Q99570 1358 aa9.16□□□□□ -0.94
MSH6-209ENST00000538136 RALGAPBQ86X10 1494 aa9.16□□□□□ -0.94
MSH6-209ENST00000538136 TSPYL6Q8N831 410 aa9.15□□□□□ -0.94
MSH6-209ENST00000538136 FMNL2Q96PY5 1086 aa9.15□□□□□ -0.94
MSH6-209ENST00000538136 SOS2Q07890 1332 aaPredicted RBP9.15□□□□□ -0.94
MSH6-209ENST00000538136 ILDR2Q71H61 639 aa9.15□□□□□ -0.94
MSH6-209ENST00000538136 COPS6Q7L5N1 327 aa9.15□□□□□ -0.94
MSH6-209ENST00000538136 NUTM1Q86Y26 1132 aa9.15□□□□□ -0.94
MSH6-209ENST00000538136 MARCH10Q8NA82 808 aaPredicted RBP9.15□□□□□ -0.94
MSH6-209ENST00000538136 NEUROD6Q96NK8 337 aa9.15□□□□□ -0.94
MSH6-209ENST00000538136 MYD88Q99836 296 aa9.15□□□□□ -0.94
MSH6-209ENST00000538136 USP6P35125 1406 aa9.15□□□□□ -0.94
MSH6-209ENST00000538136 BCORL1Q5H9F3 1711 aa9.15□□□□□ -0.94
MSH6-209ENST00000538136 TET3O43151 1660 aa9.15□□□□□ -0.94
MSH6-209ENST00000538136 IL13P35225 146 aa9.15□□□□□ -0.94
MSH6-209ENST00000538136 TRMT112Q9UI30 125 aaKnown RBP9.15□□□□□ -0.94
MSH6-209ENST00000538136 WWC1Q8IX03 1113 aa9.15□□□□□ -0.95
MSH6-209ENST00000538136 SRP68Q9UHB9 627 aaKnown RBP9.15□□□□□ -0.95
MSH6-209ENST00000538136 VPS37DQ86XT2 251 aa9.14□□□□□ -0.95
MSH6-209ENST00000538136 CARD10Q9BWT7 1032 aa9.14□□□□□ -0.95
MSH6-209ENST00000538136 CHPF2Q9P2E5 772 aa9.14□□□□□ -0.95
MSH6-209ENST00000538136 NIP7Q9Y221 180 aaKnown RBP eCLIP9.14□□□□□ -0.95
MSH6-209ENST00000538136 BCS1LQ9Y276 419 aa9.14□□□□□ -0.95
MSH6-209ENST00000538136 NBPF5PQ86XG9 351 aaPredicted RBP9.14□□□□□ -0.95
MSH6-209ENST00000538136 PIGBQ92521 554 aa9.14□□□□□ -0.95
MSH6-209ENST00000538136 IQSEC3Q9UPP2 1182 aaPredicted RBP9.14□□□□□ -0.95
MSH6-209ENST00000538136 IL17REQ8NFR9 667 aa9.14□□□□□ -0.95
MSH6-209ENST00000538136 LRRC7Q96NW7 1537 aa9.13□□□□□ -0.95
MSH6-209ENST00000538136 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.13□□□□□ -0.95
MSH6-209ENST00000538136 RNMTO43148 476 aaKnown RBP9.13□□□□□ -0.95
MSH6-209ENST00000538136 C8orf58Q8NAV2 365 aa9.13□□□□□ -0.95
MSH6-209ENST00000538136 XAGE3Q8WTP9 111 aa9.13□□□□□ -0.95
MSH6-209ENST00000538136 LOC102724428A0A0B4J2F2 783 aa9.13□□□□□ -0.95
MSH6-209ENST00000538136 RAD21O60216 631 aa9.13□□□□□ -0.95
MSH6-209ENST00000538136 DDX58O95786 925 aaKnown RBP9.13□□□□□ -0.95
MSH6-209ENST00000538136 SIK1P57059 783 aa9.13□□□□□ -0.95
MSH6-209ENST00000538136 TPRNQ4KMQ1 711 aa9.13□□□□□ -0.95
MSH6-209ENST00000538136 TRAPPC3LQ5T215 181 aa9.13□□□□□ -0.95
MSH6-209ENST00000538136 STK11IPQ8N1F8 1099 aa9.13□□□□□ -0.95
MSH6-209ENST00000538136 HCLS1P14317 486 aaPredicted RBP9.13□□□□□ -0.95
MSH6-209ENST00000538136 DCAF5Q96JK2 942 aa9.13□□□□□ -0.95
MSH6-209ENST00000538136 C3P01024 1663 aa9.13□□□□□ -0.95
MSH6-209ENST00000538136 PI4KAP2A4QPH2 592 aa9.12□□□□□ -0.95
MSH6-209ENST00000538136 CCER2I3L3R5 266 aa9.12□□□□□ -0.95
MSH6-209ENST00000538136 PAXIP1Q6ZW49 1069 aaPredicted RBP9.12□□□□□ -0.95
MSH6-209ENST00000538136 PI4KAP1Q8N8J0 262 aa9.12□□□□□ -0.95
MSH6-209ENST00000538136 PHAXQ9H814 394 aaKnown RBP9.12□□□□□ -0.95
MSH6-209ENST00000538136 MBIPQ9NS73 344 aa9.12□□□□□ -0.95
MSH6-209ENST00000538136 SBNO2Q9Y2G9 1366 aa9.12□□□□□ -0.95
MSH6-209ENST00000538136 PHKG2P15735 406 aa9.12□□□□□ -0.95
MSH6-209ENST00000538136 POLD1P28340 1107 aa9.12□□□□□ -0.95
MSH6-209ENST00000538136 DZIP3Q86Y13 1208 aaKnown RBP9.12□□□□□ -0.95
MSH6-209ENST00000538136 SPATA31A6Q5VVP1 1343 aa9.12□□□□□ -0.95
MSH6-209ENST00000538136 PCDH11XQ9BZA7 1347 aa9.12□□□□□ -0.95
MSH6-209ENST00000538136 PCDH11YQ9BZA8 1340 aa9.12□□□□□ -0.95
MSH6-209ENST00000538136 EDC4Q6P2E9 1401 aaKnown RBP9.12□□□□□ -0.95
MSH6-209ENST00000538136 TXNRD1Q16881 649 aa9.12□□□□□ -0.95
MSH6-209ENST00000538136 AKAP4Q5JQC9 854 aa9.12□□□□□ -0.95
MSH6-209ENST00000538136 CCDC30Q5VVM6 783 aa9.11□□□□□ -0.95
MSH6-209ENST00000538136 ZNF790Q6PG37 636 aa9.11□□□□□ -0.95
MSH6-209ENST00000538136 HELBQ8NG08 1087 aaPredicted RBP9.11□□□□□ -0.95
MSH6-209ENST00000538136 C6orf229H3BNL8 230 aa9.11□□□□□ -0.95
MSH6-209ENST00000538136 NCBP3Q53F19 620 aaKnown RBP9.11□□□□□ -0.95
MSH6-209ENST00000538136 FAM89AQ96GI7 184 aa9.11□□□□□ -0.95
MSH6-209ENST00000538136 ZBTB1Q9Y2K1 713 aa9.11□□□□□ -0.95
MSH6-209ENST00000538136 KIF1BO60333 1816 aa9.11□□□□□ -0.95
MSH6-209ENST00000538136 IPO8O15397 1037 aaKnown RBP9.11□□□□□ -0.95
MSH6-209ENST00000538136 RBM26Q5T8P6 1007 aaKnown RBP9.11□□□□□ -0.95
MSH6-209ENST00000538136 UBE3BQ7Z3V4 1068 aa9.11□□□□□ -0.95
MSH6-209ENST00000538136 NOB1Q9ULX3 412 aaKnown RBP9.11□□□□□ -0.95
MSH6-209ENST00000538136 TECPR2O15040 1411 aa9.11□□□□□ -0.95
MSH6-209ENST00000538136 MST1RQ04912 1400 aa9.11□□□□□ -0.95
MSH6-209ENST00000538136 TNS3Q68CZ2 1445 aa9.11□□□□□ -0.95
MSH6-209ENST00000538136 E9PSI1 815 aa9.1□□□□□ -0.95
MSH6-209ENST00000538136 CWF19L2Q2TBE0 894 aaKnown RBP9.1□□□□□ -0.95
MSH6-209ENST00000538136 SETDB2Q96T68 719 aa9.1□□□□□ -0.95
MSH6-209ENST00000538136 NAP1L2Q9ULW6 460 aaPredicted RBP9.1□□□□□ -0.95
MSH6-209ENST00000538136 SNRPA1P09661 255 aaKnown RBP9.1□□□□□ -0.95
MSH6-209ENST00000538136 TNNQ9UQP3 1299 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms