RNA–Protein interactions for RNA: ENST00000534412.5

PICALM-223, Transcript of phosphatidylinositol binding clathrin assembly protein, human

TSL 5

Gene PICALM, Length 811 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PICALM-223	ENST00000534412	IL27	Q8NEV9	243 aa		10.39	□□□□□ -0.75
PICALM-223	ENST00000534412	CDK15	Q96Q40	435 aa		10.39	□□□□□ -0.75
PICALM-223	ENST00000534412	BCORL1	Q5H9F3	1711 aa		10.38	□□□□□ -0.75
PICALM-223	ENST00000534412	MADD	Q8WXG6	1647 aa		10.38	□□□□□ -0.75
PICALM-223	ENST00000534412	C4orf48	Q5BLP8	95 aa		10.38	□□□□□ -0.75
PICALM-223	ENST00000534412	RAPGEF3	O95398	923 aa		10.37	□□□□□ -0.75
PICALM-223	ENST00000534412	WDR4	P57081	412 aa	Known RBP	10.37	□□□□□ -0.75
PICALM-223	ENST00000534412	NR5A1	Q13285	461 aa		10.37	□□□□□ -0.75
PICALM-223	ENST00000534412	TRIM47	Q96LD4	638 aa		10.37	□□□□□ -0.75
PICALM-223	ENST00000534412	CARD14	Q9BXL6	1004 aa		10.37	□□□□□ -0.75
PICALM-223	ENST00000534412	FKBPL	Q9UIM3	349 aa		10.37	□□□□□ -0.75
PICALM-223	ENST00000534412	ARHGEF40	Q8TER5	1519 aa		10.37	□□□□□ -0.75
PICALM-223	ENST00000534412	SAMD9	Q5K651	1589 aa		10.36	□□□□□ -0.75
PICALM-223	ENST00000534412	NR6A1	Q15406	480 aa		10.36	□□□□□ -0.75
PICALM-223	ENST00000534412	SH3BP5L	Q7L8J4	393 aa		10.36	□□□□□ -0.75
PICALM-223	ENST00000534412	SH3RF1	Q7Z6J0	888 aa		10.36	□□□□□ -0.75
PICALM-223	ENST00000534412	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.35	□□□□□ -0.75
PICALM-223	ENST00000534412	RFC5	P40937	340 aa		10.35	□□□□□ -0.75
PICALM-223	ENST00000534412	FBXO31	Q5XUX0	539 aa	Predicted RBP	10.35	□□□□□ -0.75
PICALM-223	ENST00000534412	PDXDC2P	Q6P474	469 aa		10.35	□□□□□ -0.75
PICALM-223	ENST00000534412	VASH1	Q7L8A9	365 aa	Predicted RBP	10.35	□□□□□ -0.75
PICALM-223	ENST00000534412	ARHGAP9	Q9BRR9	750 aa		10.35	□□□□□ -0.75
PICALM-223	ENST00000534412	USP17L8	P0C7I0	530 aa		10.34	□□□□□ -0.75
PICALM-223	ENST00000534412	BMP1	P13497	986 aa		10.34	□□□□□ -0.75
PICALM-223	ENST00000534412	BRPF1	P55201	1214 aa	Predicted RBP	10.34	□□□□□ -0.75
PICALM-223	ENST00000534412	C1QTNF2	Q9BXJ5	285 aa		10.34	□□□□□ -0.75
PICALM-223	ENST00000534412	FHOD3	Q2V2M9	1422 aa		10.33	□□□□□ -0.76
PICALM-223	ENST00000534412	RAPGEF6	Q8TEU7	1601 aa		10.33	□□□□□ -0.76
PICALM-223	ENST00000534412	ARID3C	A6NKF2	412 aa		10.33	□□□□□ -0.76
PICALM-223	ENST00000534412	SNRPB	P14678	240 aa	Known RBP	10.33	□□□□□ -0.76
PICALM-223	ENST00000534412	SCARF1	Q14162	830 aa		10.33	□□□□□ -0.76
PICALM-223	ENST00000534412	TMEM259	Q4ZIN3	620 aa		10.33	□□□□□ -0.76
PICALM-223	ENST00000534412	ZBTB33	Q86T24	672 aa		10.33	□□□□□ -0.76
PICALM-223	ENST00000534412	TRMT44	Q8IYL2	757 aa	Known RBP	10.33	□□□□□ -0.76
PICALM-223	ENST00000534412	NUP153	P49790	1475 aa	Known RBP	10.33	□□□□□ -0.76
PICALM-223	ENST00000534412	ZMYM4	Q5VZL5	1548 aa		10.33	□□□□□ -0.76
PICALM-223	ENST00000534412	DENND4B	O75064	1496 aa	Predicted RBP	10.32	□□□□□ -0.76
PICALM-223	ENST00000534412	TIMP2	P16035	220 aa		10.32	□□□□□ -0.76
PICALM-223	ENST00000534412	PTK2	Q05397	1052 aa		10.32	□□□□□ -0.76
PICALM-223	ENST00000534412	FAM9A	Q8IZU1	332 aa	Predicted RBP	10.32	□□□□□ -0.76
PICALM-223	ENST00000534412	MAP4K5	Q9Y4K4	846 aa		10.32	□□□□□ -0.76
PICALM-223	ENST00000534412	ZIC2	O95409	532 aa	Predicted RBP	10.31	□□□□□ -0.76
PICALM-223	ENST00000534412	FSHR	P23945	695 aa		10.31	□□□□□ -0.76
PICALM-223	ENST00000534412	GRM5	P41594	1212 aa		10.31	□□□□□ -0.76
PICALM-223	ENST00000534412	TRIM46	Q7Z4K8	759 aa		10.31	□□□□□ -0.76
PICALM-223	ENST00000534412	SLC10A4	Q96EP9	437 aa		10.31	□□□□□ -0.76
PICALM-223	ENST00000534412	ARID4B	Q4LE39	1312 aa	Predicted RBP	10.31	□□□□□ -0.76
PICALM-223	ENST00000534412	RICTOR	Q6R327	1708 aa		10.3	□□□□□ -0.76
PICALM-223	ENST00000534412	ERFE	Q4G0M1	354 aa		10.3	□□□□□ -0.76
PICALM-223	ENST00000534412	CDV3	Q9UKY7	258 aa	Known RBP	10.3	□□□□□ -0.76
PICALM-223	ENST00000534412	FANCA	O15360	1455 aa		10.3	□□□□□ -0.76
PICALM-223	ENST00000534412	RIMS1	Q86UR5	1692 aa	Known RBP	10.29	□□□□□ -0.76
PICALM-223	ENST00000534412	NR3C2	P08235	984 aa		10.29	□□□□□ -0.76
PICALM-223	ENST00000534412	MRPL14	Q6P1L8	145 aa	Known RBP	10.29	□□□□□ -0.76
PICALM-223	ENST00000534412	GPSM3	Q9Y4H4	160 aa		10.29	□□□□□ -0.76
PICALM-223	ENST00000534412	POGZ	Q7Z3K3	1410 aa		10.29	□□□□□ -0.76
PICALM-223	ENST00000534412	AKNA	Q7Z591	1439 aa		10.29	□□□□□ -0.76
PICALM-223	ENST00000534412	MAGI2	Q86UL8	1455 aa		10.29	□□□□□ -0.76
PICALM-223	ENST00000534412	CFAP74	Q9C0B2	1584 aa		10.28	□□□□□ -0.76
PICALM-223	ENST00000534412	UPP2	O95045	317 aa		10.28	□□□□□ -0.76
PICALM-223	ENST00000534412	TREML4	Q6UXN2	200 aa		10.28	□□□□□ -0.76
PICALM-223	ENST00000534412	ITPKC	Q96DU7	683 aa		10.28	□□□□□ -0.76
PICALM-223	ENST00000534412	ZFP42	Q96MM3	310 aa		10.28	□□□□□ -0.76
PICALM-223	ENST00000534412	KLF16	Q9BXK1	252 aa	Predicted RBP	10.28	□□□□□ -0.76
PICALM-223	ENST00000534412	EFCAB5	A4FU69	1503 aa		10.28	□□□□□ -0.76
PICALM-223	ENST00000534412	ZFYVE16	Q7Z3T8	1539 aa		10.28	□□□□□ -0.76
PICALM-223	ENST00000534412	TTC37	Q6PGP7	1564 aa		10.27	□□□□□ -0.76
PICALM-223	ENST00000534412	HSPA2	P54652	639 aa		10.27	□□□□□ -0.77
PICALM-223	ENST00000534412	CCDC116	Q8IYX3	515 aa		10.27	□□□□□ -0.77
PICALM-223	ENST00000534412	ZFAND3	Q9H8U3	227 aa		10.27	□□□□□ -0.77
PICALM-223	ENST00000534412	HMX1	Q9NP08	348 aa	Predicted RBP	10.27	□□□□□ -0.77
PICALM-223	ENST00000534412	EMILIN1	Q9Y6C2	1016 aa		10.27	□□□□□ -0.77
PICALM-223	ENST00000534412	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	10.27	□□□□□ -0.77	3e-43	■□□□□ 9.6
PICALM-223	ENST00000534412	SIGLEC1	Q9BZZ2	1709 aa		10.27	□□□□□ -0.77
PICALM-223	ENST00000534412	YEATS2	Q9ULM3	1422 aa		10.26	□□□□□ -0.77
PICALM-223	ENST00000534412	WFS1	O76024	890 aa		10.26	□□□□□ -0.77
PICALM-223	ENST00000534412	EPS8L1	Q8TE68	723 aa		10.26	□□□□□ -0.77
PICALM-223	ENST00000534412	PURB	Q96QR8	312 aa	Known RBP	10.26	□□□□□ -0.77
PICALM-223	ENST00000534412	ARHGEF12	Q9NZN5	1544 aa		10.24	□□□□□ -0.77
PICALM-223	ENST00000534412	KCTD15	Q96SI1	283 aa	Predicted RBP	10.24	□□□□□ -0.77
PICALM-223	ENST00000534412	PGPEP1	Q9NXJ5	209 aa		10.24	□□□□□ -0.77
PICALM-223	ENST00000534412	HECW1	Q76N89	1606 aa		10.23	□□□□□ -0.77
PICALM-223	ENST00000534412	PLEKHD1	A6NEE1	506 aa		10.23	□□□□□ -0.77
PICALM-223	ENST00000534412	DHX9	Q08211	1270 aa	Known RBP	10.23	□□□□□ -0.77
PICALM-223	ENST00000534412	ADAM32	Q8TC27	787 aa		10.23	□□□□□ -0.77
PICALM-223	ENST00000534412	TERT	O14746	1132 aa	Known RBP	10.22	□□□□□ -0.77
PICALM-223	ENST00000534412	NBPF20	Q3BBV1	942 aa		10.22	□□□□□ -0.77
PICALM-223	ENST00000534412	C6orf118	Q5T5N4	469 aa		10.22	□□□□□ -0.77
PICALM-223	ENST00000534412	DZIP3	Q86Y13	1208 aa	Known RBP	10.22	□□□□□ -0.77
PICALM-223	ENST00000534412	SLC16A10	Q8TF71	515 aa		10.22	□□□□□ -0.77
PICALM-223	ENST00000534412	BMP2	P12643	396 aa		10.21	□□□□□ -0.77
PICALM-223	ENST00000534412	PLCH2	O75038	1416 aa		10.21	□□□□□ -0.78
PICALM-223	ENST00000534412	FER1L4	A9Z1Z3	1794 aa		10.21	□□□□□ -0.78
PICALM-223	ENST00000534412	NFX1	Q12986	1120 aa	Known RBP	10.2	□□□□□ -0.78
PICALM-223	ENST00000534412	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	10.2	□□□□□ -0.78
PICALM-223	ENST00000534412	C9orf84	Q5VXU9	1444 aa		10.2	□□□□□ -0.78
PICALM-223	ENST00000534412	MEIOB	Q8N635	442 aa		10.2	□□□□□ -0.78
PICALM-223	ENST00000534412	NXF1	Q9UBU9	619 aa	Known RBP	10.2	□□□□□ -0.78
PICALM-223	ENST00000534412	PREX1	Q8TCU6	1659 aa		10.19	□□□□□ -0.78
PICALM-223	ENST00000534412	ATP10A	O60312	1499 aa		10.19	□□□□□ -0.78

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