RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	GNRH1	P01148	92 aa		5.77	□□□□□ -1.49
CD44-238	ENST00000534296	SKI	P12755	728 aa		5.77	□□□□□ -1.49
CD44-238	ENST00000534296	EML3	Q32P44	896 aa		5.77	□□□□□ -1.49
CD44-238	ENST00000534296	ALG2	Q9H553	416 aa		5.77	□□□□□ -1.49
CD44-238	ENST00000534296	ZNF395	Q9H8N7	513 aa	Predicted RBP	5.77	□□□□□ -1.49
CD44-238	ENST00000534296	GTF3C3	Q9Y5Q9	886 aa		5.77	□□□□□ -1.49
CD44-238	ENST00000534296	SOS2	Q07890	1332 aa	Predicted RBP	5.76	□□□□□ -1.49
CD44-238	ENST00000534296	GPC1	P35052	558 aa		5.76	□□□□□ -1.49
CD44-238	ENST00000534296	ADD1	P35611	737 aa	Known RBP	5.76	□□□□□ -1.49
CD44-238	ENST00000534296	HDGFL1	Q5TGJ6	251 aa		5.76	□□□□□ -1.49
CD44-238	ENST00000534296	NPAS3	Q8IXF0	933 aa		5.76	□□□□□ -1.49
CD44-238	ENST00000534296	CCDC85A	Q96PX6	553 aa	Predicted RBP	5.76	□□□□□ -1.49
CD44-238	ENST00000534296	INSM2	Q96T92	566 aa	Predicted RBP	5.76	□□□□□ -1.49
CD44-238	ENST00000534296	SCTR	P47872	440 aa		5.75	□□□□□ -1.49
CD44-238	ENST00000534296	SLC27A3	Q5K4L6	730 aa		5.75	□□□□□ -1.49
CD44-238	ENST00000534296	PHTF2	Q8N3S3	785 aa		5.75	□□□□□ -1.49
CD44-238	ENST00000534296	GLMN	Q92990	594 aa		5.75	□□□□□ -1.49
CD44-238	ENST00000534296	CALR3	Q96L12	384 aa	Known RBP	5.75	□□□□□ -1.49
CD44-238	ENST00000534296	OSBPL3	Q9H4L5	887 aa		5.75	□□□□□ -1.49
CD44-238	ENST00000534296	ARHGEF10L	Q9HCE6	1279 aa		5.75	□□□□□ -1.49
CD44-238	ENST00000534296	NXF1	Q9UBU9	619 aa	Known RBP	5.75	□□□□□ -1.49
CD44-238	ENST00000534296	NOD1	Q9Y239	953 aa		5.75	□□□□□ -1.49
CD44-238	ENST00000534296		A0A1W2PRU2	124 aa		5.74	□□□□□ -1.49
CD44-238	ENST00000534296	POM121C	A8CG34	1229 aa		5.74	□□□□□ -1.49
CD44-238	ENST00000534296	TRAK2	O60296	914 aa		5.74	□□□□□ -1.49
CD44-238	ENST00000534296	PSME1	Q06323	249 aa		5.74	□□□□□ -1.49
CD44-238	ENST00000534296	CLN3	Q13286	438 aa		5.74	□□□□□ -1.49
CD44-238	ENST00000534296	ERICH6	Q7L0X2	663 aa		5.74	□□□□□ -1.49
CD44-238	ENST00000534296	LYSMD3	Q7Z3D4	306 aa		5.74	□□□□□ -1.49
CD44-238	ENST00000534296	TRIM50	Q86XT4	487 aa		5.74	□□□□□ -1.49
CD44-238	ENST00000534296	FNBP4	Q8N3X1	1017 aa	Predicted RBP	5.74	□□□□□ -1.49
CD44-238	ENST00000534296	CDCA7	Q9BWT1	371 aa	Predicted RBP	5.74	□□□□□ -1.49
CD44-238	ENST00000534296	DNMT3L	Q9UJW3	386 aa		5.74	□□□□□ -1.49
CD44-238	ENST00000534296	FIGNL2	A6NMB9	653 aa		5.73	□□□□□ -1.49
CD44-238	ENST00000534296	USP17L5	A8MUK1	530 aa		5.73	□□□□□ -1.49
CD44-238	ENST00000534296	TERT	O14746	1132 aa	Known RBP	5.73	□□□□□ -1.49
CD44-238	ENST00000534296	CTSO	P43234	321 aa	Predicted RBP	5.73	□□□□□ -1.49
CD44-238	ENST00000534296	RNF144A	P50876	292 aa	Predicted RBP	5.73	□□□□□ -1.49
CD44-238	ENST00000534296	RNF217	Q8TC41	542 aa		5.73	□□□□□ -1.49
CD44-238	ENST00000534296	CHIC2	Q9UKJ5	165 aa		5.73	□□□□□ -1.49
CD44-238	ENST00000534296	RBM19	Q9Y4C8	960 aa	Known RBP	5.73	□□□□□ -1.49
CD44-238	ENST00000534296	SOBP	A7XYQ1	873 aa		5.72	□□□□□ -1.49
CD44-238	ENST00000534296	PIK3CD	O00329	1044 aa		5.72	□□□□□ -1.49
CD44-238	ENST00000534296	ATP9B	O43861	1147 aa		5.72	□□□□□ -1.49
CD44-238	ENST00000534296	WFS1	O76024	890 aa		5.72	□□□□□ -1.49
CD44-238	ENST00000534296	ATP1A2	P50993	1020 aa		5.72	□□□□□ -1.49
CD44-238	ENST00000534296	GNAS	Q5JWF2	1037 aa		5.72	□□□□□ -1.49
CD44-238	ENST00000534296	IRF7	Q92985	503 aa		5.72	□□□□□ -1.49
CD44-238	ENST00000534296	CNKSR1	Q969H4	720 aa		5.72	□□□□□ -1.49
CD44-238	ENST00000534296	ESYT1	Q9BSJ8	1104 aa		5.72	□□□□□ -1.49
CD44-238	ENST00000534296	NCOA4	Q13772	614 aa		5.71	□□□□□ -1.5
CD44-238	ENST00000534296	FOXD4L5	Q5VV16	416 aa	Predicted RBP	5.71	□□□□□ -1.5
CD44-238	ENST00000534296	PLEKHM2	Q8IWE5	1019 aa		5.71	□□□□□ -1.5
CD44-238	ENST00000534296	RAB6B	Q9NRW1	208 aa		5.71	□□□□□ -1.5
CD44-238	ENST00000534296	USP17L3	A6NCW0	530 aa		5.7	□□□□□ -1.5
CD44-238	ENST00000534296	USP17L4	A6NCW7	530 aa		5.7	□□□□□ -1.5
CD44-238	ENST00000534296	BACH1	O14867	736 aa		5.7	□□□□□ -1.5
CD44-238	ENST00000534296	GDF10	P55107	478 aa		5.7	□□□□□ -1.5
CD44-238	ENST00000534296	GTF2I	P78347	998 aa		5.7	□□□□□ -1.5
CD44-238	ENST00000534296	PTS	Q03393	145 aa		5.7	□□□□□ -1.5
CD44-238	ENST00000534296	TLR1	Q15399	786 aa		5.7	□□□□□ -1.5
CD44-238	ENST00000534296	TMEM214	Q6NUQ4	689 aa	Known RBP	5.7	□□□□□ -1.5
CD44-238	ENST00000534296	USP17L2	Q6R6M4	530 aa		5.7	□□□□□ -1.5
CD44-238	ENST00000534296	TREML4	Q6UXN2	200 aa		5.7	□□□□□ -1.5
CD44-238	ENST00000534296	USP17L1	Q7RTZ2	530 aa		5.7	□□□□□ -1.5
CD44-238	ENST00000534296	PRICKLE2	Q7Z3G6	844 aa		5.7	□□□□□ -1.5
CD44-238	ENST00000534296	KDF1	Q8NAX2	398 aa	Predicted RBP	5.7	□□□□□ -1.5
CD44-238	ENST00000534296	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	5.7	□□□□□ -1.5
CD44-238	ENST00000534296	ZMYND15	Q9H091	742 aa		5.7	□□□□□ -1.5
CD44-238	ENST00000534296	TSGA10IP	Q3SY00	556 aa		5.69	□□□□□ -1.5
CD44-238	ENST00000534296	TAS1R3	Q7RTX0	852 aa		5.69	□□□□□ -1.5
CD44-238	ENST00000534296	C14orf37	Q86TY3	774 aa		5.69	□□□□□ -1.5
CD44-238	ENST00000534296	DEPDC4	Q8N2C3	294 aa		5.69	□□□□□ -1.5
CD44-238	ENST00000534296	NBPF15	Q8N660	670 aa		5.69	□□□□□ -1.5
CD44-238	ENST00000534296	ADAMTS19	Q8TE59	1207 aa		5.69	□□□□□ -1.5
CD44-238	ENST00000534296		H3BM21	787 aa		5.68	□□□□□ -1.5
CD44-238	ENST00000534296	WASL	O00401	505 aa	Predicted RBP	5.68	□□□□□ -1.5
CD44-238	ENST00000534296	IL2RA	P01589	272 aa		5.68	□□□□□ -1.5
CD44-238	ENST00000534296	INHA	P05111	366 aa		5.68	□□□□□ -1.5
CD44-238	ENST00000534296	WDR44	Q5JSH3	913 aa		5.68	□□□□□ -1.5
CD44-238	ENST00000534296	TBC1D9	Q6ZT07	1266 aa		5.68	□□□□□ -1.5
CD44-238	ENST00000534296	CCDC155	Q8N6L0	562 aa		5.68	□□□□□ -1.5
CD44-238	ENST00000534296	XAGE2	Q96GT9	111 aa		5.68	□□□□□ -1.5
CD44-238	ENST00000534296	UCN2	Q96RP3	112 aa		5.68	□□□□□ -1.5
CD44-238	ENST00000534296	ETNK1	Q9HBU6	452 aa		5.68	□□□□□ -1.5
CD44-238	ENST00000534296	ZNF777	Q9ULD5	760 aa	Predicted RBP	5.68	□□□□□ -1.5
CD44-238	ENST00000534296	PALM3	A6NDB9	673 aa	Predicted RBP	5.67	□□□□□ -1.5
CD44-238	ENST00000534296	SPATA31C2	B4DYI2	1134 aa		5.67	□□□□□ -1.5
CD44-238	ENST00000534296	PPFIA3	O75145	1194 aa		5.67	□□□□□ -1.5
CD44-238	ENST00000534296	CENPC	Q03188	943 aa		5.67	□□□□□ -1.5
CD44-238	ENST00000534296	FOXR1	Q6PIV2	292 aa		5.67	□□□□□ -1.5
CD44-238	ENST00000534296	PPP1R12C	Q9BZL4	782 aa		5.67	□□□□□ -1.5
CD44-238	ENST00000534296	GRIP2	Q9C0E4	1043 aa		5.67	□□□□□ -1.5
CD44-238	ENST00000534296	DNAAF2	Q9NVR5	837 aa	Known RBP	5.67	□□□□□ -1.5
CD44-238	ENST00000534296	TFIP11	Q9UBB9	837 aa	Known RBP	5.67	□□□□□ -1.5
CD44-238	ENST00000534296	SLC35F4	A4IF30	521 aa		5.66	□□□□□ -1.5
CD44-238	ENST00000534296		H7C1W4	665 aa		5.66	□□□□□ -1.5
CD44-238	ENST00000534296	RHOQ	P17081	205 aa		5.66	□□□□□ -1.5
CD44-238	ENST00000534296	ITGA6	P23229	1130 aa		5.66	□□□□□ -1.5
CD44-238	ENST00000534296	VEGFB	P49765	207 aa		5.66	□□□□□ -1.5

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