RNA–Protein interactions for RNA: ENST00000532088.1

COPB1-208, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 3

Gene COPB1, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-208ENST00000532088 FAM83GA6ND36 823 aa16.82■□□□□ 0.28
COPB1-208ENST00000532088 NUTM2BA6NNL0 878 aaPredicted RBP16.82■□□□□ 0.28
COPB1-208ENST00000532088 NUTM2EB1AL46 878 aaPredicted RBP16.82■□□□□ 0.28
COPB1-208ENST00000532088 NUTM2AQ8IVF1 878 aaPredicted RBP16.82■□□□□ 0.28
COPB1-208ENST00000532088 CCER2I3L3R5 266 aa16.81■□□□□ 0.28
COPB1-208ENST00000532088 STK25O00506 426 aa16.81■□□□□ 0.28
COPB1-208ENST00000532088 GALR2O43603 387 aaPredicted RBP16.81■□□□□ 0.28
COPB1-208ENST00000532088 COL3A1P02461 1466 aaPredicted RBP16.8■□□□□ 0.28
COPB1-208ENST00000532088 ADAMTS2O95450 1211 aa16.8■□□□□ 0.28
COPB1-208ENST00000532088 FNBP4Q8N3X1 1017 aaPredicted RBP16.8■□□□□ 0.28
COPB1-208ENST00000532088 PLCH1Q4KWH8 1693 aa16.79■□□□□ 0.28
COPB1-208ENST00000532088 FAM208AQ9UK61 1670 aaKnown RBP16.79■□□□□ 0.28
COPB1-208ENST00000532088 CAMTA1Q9Y6Y1 1673 aa16.79■□□□□ 0.28
COPB1-208ENST00000532088 ILDR1Q86SU0 546 aaPredicted RBP16.79■□□□□ 0.28
COPB1-208ENST00000532088 SP7Q8TDD2 431 aaPredicted RBP16.79■□□□□ 0.28
COPB1-208ENST00000532088 COL5A2P05997 1499 aaPredicted RBP16.79■□□□□ 0.28
COPB1-208ENST00000532088 ERBB3P21860 1342 aa16.78■□□□□ 0.28
COPB1-208ENST00000532088 PPM1GO15355 546 aaPredicted RBP16.78■□□□□ 0.28
COPB1-208ENST00000532088 GABBR2O75899 941 aa16.78■□□□□ 0.28
COPB1-208ENST00000532088 CHRNA2Q15822 529 aa16.78■□□□□ 0.28
COPB1-208ENST00000532088 HSP90AB2PQ58FF8 381 aa16.78■□□□□ 0.28
COPB1-208ENST00000532088 BBXQ8WY36 941 aaPredicted RBP16.78■□□□□ 0.28
COPB1-208ENST00000532088 BCL11BQ9C0K0 894 aaPredicted RBP16.78■□□□□ 0.28
COPB1-208ENST00000532088 AXIN2Q9Y2T1 843 aa16.78■□□□□ 0.28
COPB1-208ENST00000532088 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.78■□□□□ 0.28
COPB1-208ENST00000532088 NRAPQ86VF7 1730 aa16.77■□□□□ 0.28
COPB1-208ENST00000532088 MEX3CQ5U5Q3 659 aaKnown RBP16.77■□□□□ 0.28
COPB1-208ENST00000532088 TRPC6Q9Y210 931 aa16.77■□□□□ 0.28
COPB1-208ENST00000532088 ZBTB7CA1YPR0 619 aa16.76■□□□□ 0.27
COPB1-208ENST00000532088 DIAPH1O60610 1272 aaKnown RBP16.76■□□□□ 0.27
COPB1-208ENST00000532088 WDR17Q8IZU2 1322 aa16.75■□□□□ 0.27
COPB1-208ENST00000532088 IL13P35225 146 aa16.75■□□□□ 0.27
COPB1-208ENST00000532088 EIF4A2Q14240 407 aaKnown RBP16.75■□□□□ 0.27
COPB1-208ENST00000532088 ANKRD24Q8TF21 1146 aa16.75■□□□□ 0.27
COPB1-208ENST00000532088 NGLY1Q96IV0 654 aa16.75■□□□□ 0.27
COPB1-208ENST00000532088 C8orf37Q96NL8 207 aa16.75■□□□□ 0.27
COPB1-208ENST00000532088 BTG4Q9NY30 223 aa16.75■□□□□ 0.27
COPB1-208ENST00000532088 NUDCQ9Y266 331 aa16.75■□□□□ 0.27
COPB1-208ENST00000532088 STK24Q9Y6E0 443 aa16.75■□□□□ 0.27
COPB1-208ENST00000532088 RGPD5Q99666 1765 aa16.74■□□□□ 0.27
COPB1-208ENST00000532088 BCL9LQ86UU0 1499 aa16.74■□□□□ 0.27
COPB1-208ENST00000532088 NCAPD2Q15021 1401 aa16.74■□□□□ 0.27
COPB1-208ENST00000532088 UNC5CLQ8IV45 518 aa16.74■□□□□ 0.27
COPB1-208ENST00000532088 RGPD1P0DJD0 1748 aa16.73■□□□□ 0.27
COPB1-208ENST00000532088 CRB1P82279 1406 aa16.72■□□□□ 0.27
COPB1-208ENST00000532088 TIE1P35590 1138 aa16.72■□□□□ 0.27
COPB1-208ENST00000532088 EVA1CP58658 441 aa16.72■□□□□ 0.27
COPB1-208ENST00000532088 MRS2Q9HD23 443 aa16.72■□□□□ 0.27
COPB1-208ENST00000532088 PLEKHG2Q9H7P9 1386 aa16.72■□□□□ 0.27
COPB1-208ENST00000532088 IGSF1Q8N6C5 1336 aa16.71■□□□□ 0.27
COPB1-208ENST00000532088 AFF2P51816 1311 aa16.7■□□□□ 0.26
COPB1-208ENST00000532088 VPS72Q15906 364 aa16.7■□□□□ 0.26
COPB1-208ENST00000532088 CARD10Q9BWT7 1032 aa16.7■□□□□ 0.26
COPB1-208ENST00000532088 USP21Q9UK80 565 aa16.7■□□□□ 0.26
COPB1-208ENST00000532088 KDRP35968 1356 aa16.69■□□□□ 0.26
COPB1-208ENST00000532088 CSB-PGBD3P0DP91 1061 aa16.69■□□□□ 0.26
COPB1-208ENST00000532088 ZNF772Q68DY9 489 aaPredicted RBP16.69■□□□□ 0.26
COPB1-208ENST00000532088 EYA1Q99502 592 aa16.69■□□□□ 0.26
COPB1-208ENST00000532088 TMEM106CQ9BVX2 250 aa16.69■□□□□ 0.26
COPB1-208ENST00000532088 THRAP3Q9Y2W1 955 aaKnown RBP16.69■□□□□ 0.26
COPB1-208ENST00000532088 ATRNO75882 1429 aa16.69■□□□□ 0.26
COPB1-208ENST00000532088 CCDC184Q52MB2 194 aa16.68■□□□□ 0.26
COPB1-208ENST00000532088 LARP1Q6PKG0 1096 aaKnown RBP16.68■□□□□ 0.26
COPB1-208ENST00000532088 PNISRQ8TF01 805 aaKnown RBP16.68■□□□□ 0.26
COPB1-208ENST00000532088 LTV1Q96GA3 475 aaPredicted RBP16.68■□□□□ 0.26
COPB1-208ENST00000532088 STRN4Q9NRL3 753 aa16.68■□□□□ 0.26
COPB1-208ENST00000532088 WDR43Q15061 677 aaKnown RBP eCLIP16.67■□□□□ 0.26
COPB1-208ENST00000532088 NBPF6Q5VWK0 638 aa16.67■□□□□ 0.26
COPB1-208ENST00000532088 TOM1L2Q6ZVM7 507 aa16.67■□□□□ 0.26
COPB1-208ENST00000532088 NBPF4Q96M43 638 aa16.67■□□□□ 0.26
COPB1-208ENST00000532088 TRPC5Q9UL62 973 aaPredicted RBP16.67■□□□□ 0.26
COPB1-208ENST00000532088 SPATA31A5Q5VU36 1347 aa16.67■□□□□ 0.26
COPB1-208ENST00000532088 SPATA31A7Q8IWB4 1347 aa16.67■□□□□ 0.26
COPB1-208ENST00000532088 PNNQ9H307 717 aaKnown RBP16.66■□□□□ 0.26
COPB1-208ENST00000532088 NLRP2Q9NX02 1062 aa16.66■□□□□ 0.26
COPB1-208ENST00000532088 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.66■□□□□ 0.26
COPB1-208ENST00000532088 SPATA31A1Q5TZJ5 1347 aa16.66■□□□□ 0.26
COPB1-208ENST00000532088 U2SURPO15042 1029 aaKnown RBP16.65■□□□□ 0.26
COPB1-208ENST00000532088 FCHSD2O94868 740 aa16.65■□□□□ 0.26
COPB1-208ENST00000532088 BMP2KQ9NSY1 1161 aaPredicted RBP16.65■□□□□ 0.26
COPB1-208ENST00000532088 RGPD2P0DJD1 1756 aa16.64■□□□□ 0.25
COPB1-208ENST00000532088 TTLL13PA6NNM8 815 aa16.64■□□□□ 0.25
COPB1-208ENST00000532088 U2AF1L5P0DN76 240 aaPredicted RBP16.64■□□□□ 0.25
COPB1-208ENST00000532088 U2AF1Q01081 240 aaKnown RBP eCLIP16.64■□□□□ 0.25
COPB1-208ENST00000532088 BARGINQ6ZT62 677 aa16.64■□□□□ 0.25
COPB1-208ENST00000532088 TCP11L2Q8N4U5 519 aa16.64■□□□□ 0.25
COPB1-208ENST00000532088 CDCA7Q9BWT1 371 aaPredicted RBP16.64■□□□□ 0.25
COPB1-208ENST00000532088 NKX1-1Q15270 411 aaPredicted RBP16.63■□□□□ 0.25
COPB1-208ENST00000532088 SULT6B1Q6IMI4 303 aa16.63■□□□□ 0.25
COPB1-208ENST00000532088 DISP2A7MBM2 1401 aa16.62■□□□□ 0.25
COPB1-208ENST00000532088 GJD4Q96KN9 370 aaPredicted RBP16.62■□□□□ 0.25
COPB1-208ENST00000532088 RSPH6AQ9H0K4 717 aa16.62■□□□□ 0.25
COPB1-208ENST00000532088 WNK3Q9BYP7 1800 aa16.61■□□□□ 0.25
COPB1-208ENST00000532088 ADAMTS8Q9UP79 889 aa16.61■□□□□ 0.25
COPB1-208ENST00000532088 PARP4Q9UKK3 1724 aaKnown RBP16.61■□□□□ 0.25
COPB1-208ENST00000532088 GLI3P10071 1580 aa16.6■□□□□ 0.25
COPB1-208ENST00000532088 RAPGEF4Q8WZA2 1011 aa16.6■□□□□ 0.25
COPB1-208ENST00000532088 QTRT2Q9H974 415 aaKnown RBP16.6■□□□□ 0.25
COPB1-208ENST00000532088 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.6■□□□□ 0.251e-6■□□□□ 10.8
COPB1-208ENST00000532088 ONECUT3O60422 494 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms