RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 K7ELQ4 463 aaPredicted RBP23.93■■□□□ 1.42
VPS28-213ENST00000530983 UBR1Q8IWV7 1749 aa23.93■■□□□ 1.42
VPS28-213ENST00000530983 MCM10Q7L590 875 aa23.93■■□□□ 1.42
VPS28-213ENST00000530983 ANKRD44Q8N8A2 993 aa23.92■■□□□ 1.42
VPS28-213ENST00000530983 PANK2Q9BZ23 570 aa23.92■■□□□ 1.42
VPS28-213ENST00000530983 KIAA0232Q92628 1395 aa23.92■■□□□ 1.42
VPS28-213ENST00000530983 TMEM2Q9UHN6 1383 aa23.91■■□□□ 1.42
VPS28-213ENST00000530983 TTC22Q5TAA0 569 aa23.91■■□□□ 1.42
VPS28-213ENST00000530983 ACEP12821 1306 aa23.9■■□□□ 1.42
VPS28-213ENST00000530983 HAP1P54257 671 aaPredicted RBP23.9■■□□□ 1.42
VPS28-213ENST00000530983 ADAMTS13Q76LX8 1427 aa23.9■■□□□ 1.42
VPS28-213ENST00000530983 MSH6P52701 1360 aa23.9■■□□□ 1.42
VPS28-213ENST00000530983 TNRQ92752 1358 aa23.9■■□□□ 1.42
VPS28-213ENST00000530983 C16orf71Q8IYS4 520 aaPredicted RBP23.9■■□□□ 1.42
VPS28-213ENST00000530983 FOXD4L1Q9NU39 408 aa23.89■■□□□ 1.42
VPS28-213ENST00000530983 HSP90AA1P07900 732 aaKnown RBP23.89■■□□□ 1.41
VPS28-213ENST00000530983 HSP90AB2PQ58FF8 381 aa23.89■■□□□ 1.41
VPS28-213ENST00000530983 CEP85Q6P2H3 762 aa23.89■■□□□ 1.41
VPS28-213ENST00000530983 GBP4Q96PP9 640 aa23.89■■□□□ 1.41
VPS28-213ENST00000530983 RPAP2Q8IXW5 612 aaPredicted RBP23.88■■□□□ 1.41
VPS28-213ENST00000530983 USP6P35125 1406 aa23.88■■□□□ 1.41
VPS28-213ENST00000530983 RTL1A6NKG5 1358 aa23.88■■□□□ 1.41
VPS28-213ENST00000530983 MRE11P49959 708 aa23.87■■□□□ 1.41
VPS28-213ENST00000530983 GAS2L2Q8NHY3 880 aa23.87■■□□□ 1.41
VPS28-213ENST00000530983 CRB1P82279 1406 aa23.87■■□□□ 1.41
VPS28-213ENST00000530983 PTPRCP08575 1304 aa23.87■■□□□ 1.41
VPS28-213ENST00000530983 PLEKHG3A1L390 1219 aa23.87■■□□□ 1.41
VPS28-213ENST00000530983 OTUD7AQ8TE49 926 aaPredicted RBP23.87■■□□□ 1.41
VPS28-213ENST00000530983 USP31Q70CQ4 1352 aa23.85■■□□□ 1.41
VPS28-213ENST00000530983 NUTM2FA1L443 756 aa23.85■■□□□ 1.41
VPS28-213ENST00000530983 MEIS3Q99687 375 aa23.84■■□□□ 1.41
VPS28-213ENST00000530983 FMN2Q9NZ56 1722 aa23.84■■□□□ 1.41
VPS28-213ENST00000530983 GRPEL1Q9HAV7 217 aa23.83■■□□□ 1.41
VPS28-213ENST00000530983 RIMS1Q86UR5 1692 aaKnown RBP23.83■■□□□ 1.41
VPS28-213ENST00000530983 USP26Q9BXU7 913 aa23.82■■□□□ 1.4
VPS28-213ENST00000530983 ISY1Q9ULR0 285 aaKnown RBP23.82■■□□□ 1.4
VPS28-213ENST00000530983 SSH2Q76I76 1423 aa23.82■■□□□ 1.4
VPS28-213ENST00000530983 SMARCA5O60264 1052 aaPredicted RBP23.82■■□□□ 1.4
VPS28-213ENST00000530983 RABEP1Q15276 862 aa23.82■■□□□ 1.4
VPS28-213ENST00000530983 AK9Q5TCS8 1911 aa23.81■■□□□ 1.4
VPS28-213ENST00000530983 SLC4A2P04920 1241 aa23.81■■□□□ 1.4
VPS28-213ENST00000530983 SSFA2P28290 1259 aa23.81■■□□□ 1.4
VPS28-213ENST00000530983 SDSP20132 328 aa23.81■■□□□ 1.4
VPS28-213ENST00000530983 MAP3K19Q56UN5 1328 aa23.8■■□□□ 1.4
VPS28-213ENST00000530983 ARHGEF10O15013 1369 aa23.8■■□□□ 1.4
VPS28-213ENST00000530983 SKOR2Q2VWA4 1001 aaPredicted RBP23.8■■□□□ 1.4
VPS28-213ENST00000530983 MIS18AQ9NYP9 233 aa23.8■■□□□ 1.4
VPS28-213ENST00000530983 SOX12O15370 315 aa23.79■■□□□ 1.4
VPS28-213ENST00000530983 APBB1O00213 710 aa23.79■■□□□ 1.4
VPS28-213ENST00000530983 FOXO3O43524 673 aa23.79■■□□□ 1.4
VPS28-213ENST00000530983 PTMSP20962 102 aa23.79■■□□□ 1.4
VPS28-213ENST00000530983 CLEC17AQ6ZS10 378 aa23.79■■□□□ 1.4
VPS28-213ENST00000530983 PLEKHG1Q9ULL1 1385 aa23.79■■□□□ 1.4
VPS28-213ENST00000530983 LTKP29376 864 aa23.78■■□□□ 1.4
VPS28-213ENST00000530983 MTHFSDQ2M296 383 aaKnown RBP23.77■■□□□ 1.4
VPS28-213ENST00000530983 GAS2L3Q86XJ1 694 aa23.77■■□□□ 1.4
VPS28-213ENST00000530983 PTPRUQ92729 1446 aa23.77■■□□□ 1.4
VPS28-213ENST00000530983 G2E3Q7L622 706 aa23.76■■□□□ 1.39
VPS28-213ENST00000530983 KDRP35968 1356 aa23.75■■□□□ 1.39
VPS28-213ENST00000530983 TSPYL4Q9UJ04 414 aa23.75■■□□□ 1.39
VPS28-213ENST00000530983 FLT4P35916 1363 aa23.74■■□□□ 1.39
VPS28-213ENST00000530983 F6X3S4 739 aa23.73■■□□□ 1.39
VPS28-213ENST00000530983 CASC1Q6TDU7 716 aa23.73■■□□□ 1.39
VPS28-213ENST00000530983 SBNO1A3KN83 1393 aa23.73■■□□□ 1.39
VPS28-213ENST00000530983 TTC21AQ8NDW8 1320 aa23.73■■□□□ 1.39
VPS28-213ENST00000530983 RTF1Q92541 710 aaKnown RBP23.73■■□□□ 1.39
VPS28-213ENST00000530983 CEP170BQ9Y4F5 1589 aaPredicted RBP23.73■■□□□ 1.39
VPS28-213ENST00000530983 HMMRO75330 724 aa23.72■■□□□ 1.39
VPS28-213ENST00000530983 BAG4O95429 457 aaKnown RBP23.72■■□□□ 1.39
VPS28-213ENST00000530983 SLC4A10Q6U841 1118 aa23.72■■□□□ 1.39
VPS28-213ENST00000530983 RGPD8O14715 1765 aaPredicted RBP23.72■■□□□ 1.39
VPS28-213ENST00000530983 CCT4P50991 539 aaKnown RBP23.71■■□□□ 1.39
VPS28-213ENST00000530983 SLC26A8Q96RN1 970 aa23.71■■□□□ 1.39
VPS28-213ENST00000530983 CLCN1P35523 988 aa23.71■■□□□ 1.39
VPS28-213ENST00000530983 OSBPL3Q9H4L5 887 aa23.71■■□□□ 1.39
VPS28-213ENST00000530983 GOLGA6L22H0YM25 854 aa23.7■■□□□ 1.38
VPS28-213ENST00000530983 LRRC37A3O60309 1634 aa23.7■■□□□ 1.38
VPS28-213ENST00000530983 IGSF1Q8N6C5 1336 aa23.7■■□□□ 1.38
VPS28-213ENST00000530983 EYA1Q99502 592 aa23.7■■□□□ 1.38
VPS28-213ENST00000530983 PIK3C2AO00443 1686 aa23.69■■□□□ 1.38
VPS28-213ENST00000530983 TUBGCP6Q96RT7 1819 aa23.69■■□□□ 1.38
VPS28-213ENST00000530983 CYP2E1P05181 493 aaPredicted RBP23.69■■□□□ 1.38
VPS28-213ENST00000530983 FAM208AQ9UK61 1670 aaKnown RBP23.69■■□□□ 1.38
VPS28-213ENST00000530983 REC8O95072 547 aa23.68■■□□□ 1.38
VPS28-213ENST00000530983 PDE1AP54750 535 aa23.68■■□□□ 1.38
VPS28-213ENST00000530983 KLHL40Q2TBA0 621 aa23.68■■□□□ 1.38
VPS28-213ENST00000530983 NAP1L5Q96NT1 182 aaPredicted RBP23.68■■□□□ 1.38
VPS28-213ENST00000530983 NUCB2P80303 420 aa23.67■■□□□ 1.38
VPS28-213ENST00000530983 ERC2O15083 957 aa23.67■■□□□ 1.38
VPS28-213ENST00000530983 XRN1Q8IZH2 1706 aaKnown RBP23.67■■□□□ 1.38
VPS28-213ENST00000530983 ST18O60284 1047 aa23.66■■□□□ 1.38
VPS28-213ENST00000530983 PKP1Q13835 747 aa23.66■■□□□ 1.38
VPS28-213ENST00000530983 GNAI2P04899 355 aa23.66■■□□□ 1.38
VPS28-213ENST00000530983 AMOTL2Q9Y2J4 779 aa23.66■■□□□ 1.38
VPS28-213ENST00000530983 DIP2AQ14689 1571 aa23.66■■□□□ 1.38
VPS28-213ENST00000530983 EID1Q9Y6B2 187 aa23.65■■□□□ 1.38
VPS28-213ENST00000530983 DDX49Q9Y6V7 483 aaKnown RBP23.65■■□□□ 1.38
VPS28-213ENST00000530983 IBTKQ9P2D0 1353 aaPredicted RBP23.65■■□□□ 1.38
VPS28-213ENST00000530983 AMPHP49418 695 aa23.65■■□□□ 1.38
VPS28-213ENST00000530983 EXOC6BQ9Y2D4 811 aa23.65■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms