RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 NBPF6Q5VWK0 638 aa27.79■■■□□ 2.04
VPS28-212ENST00000530836 NBPF4Q96M43 638 aa27.79■■■□□ 2.04
VPS28-212ENST00000530836 SEPT12Q8IYM1 358 aa27.78■■■□□ 2.04
VPS28-212ENST00000530836 WWC1Q8IX03 1113 aa27.78■■■□□ 2.04
VPS28-212ENST00000530836 PRKAR2BP31323 418 aa27.77■■■□□ 2.04
VPS28-212ENST00000530836 WDR63Q8IWG1 891 aa27.76■■■□□ 2.03
VPS28-212ENST00000530836 RGS12O14924 1447 aa27.76■■■□□ 2.03
VPS28-212ENST00000530836 TMPOP42166 694 aaKnown RBP27.75■■■□□ 2.03
VPS28-212ENST00000530836 E9PSI1 815 aa27.74■■■□□ 2.03
VPS28-212ENST00000530836 NEFLP07196 543 aa27.74■■■□□ 2.03
VPS28-212ENST00000530836 CDCA7LQ96GN5 454 aa27.74■■■□□ 2.03
VPS28-212ENST00000530836 EYA1Q99502 592 aa27.74■■■□□ 2.03
VPS28-212ENST00000530836 A0A0G2JS52 829 aa27.74■■■□□ 2.03
VPS28-212ENST00000530836 HMOX1P09601 288 aa27.74■■■□□ 2.03
VPS28-212ENST00000530836 MYT1Q01538 1121 aa27.74■■■□□ 2.03
VPS28-212ENST00000530836 CDCA7Q9BWT1 371 aaPredicted RBP27.74■■■□□ 2.03
VPS28-212ENST00000530836 RGPD1P0DJD0 1748 aa27.73■■■□□ 2.03
VPS28-212ENST00000530836 SLFN5Q08AF3 891 aa27.73■■■□□ 2.03
VPS28-212ENST00000530836 SUPT16HQ9Y5B9 1047 aaKnown RBP27.72■■■□□ 2.03
VPS28-212ENST00000530836 NEUROD2Q15784 382 aa27.71■■■□□ 2.03
VPS28-212ENST00000530836 USHBP1Q8N6Y0 703 aa27.71■■■□□ 2.03
VPS28-212ENST00000530836 RRP7AQ9Y3A4 280 aaKnown RBP27.71■■■□□ 2.03
VPS28-212ENST00000530836 TRMT2AQ8IZ69 625 aaKnown RBP27.7■■■□□ 2.03
VPS28-212ENST00000530836 IL2RBP14784 551 aa27.7■■■□□ 2.02
VPS28-212ENST00000530836 SULT6B1Q6IMI4 303 aa27.7■■■□□ 2.02
VPS28-212ENST00000530836 FAM208AQ9UK61 1670 aaKnown RBP27.69■■■□□ 2.02
VPS28-212ENST00000530836 IGSF1Q8N6C5 1336 aa27.69■■■□□ 2.02
VPS28-212ENST00000530836 DUSP27Q5VZP5 1158 aa27.69■■■□□ 2.02
VPS28-212ENST00000530836 DISP2A7MBM2 1401 aa27.69■■■□□ 2.02
VPS28-212ENST00000530836 KDRP35968 1356 aa27.68■■■□□ 2.02
VPS28-212ENST00000530836 RIPK4P57078 832 aa27.67■■■□□ 2.02
VPS28-212ENST00000530836 NFE2L2Q16236 605 aa27.67■■■□□ 2.02
VPS28-212ENST00000530836 THSD7AQ9UPZ6 1657 aa27.66■■■□□ 2.02
VPS28-212ENST00000530836 NCAPD2Q15021 1401 aa27.66■■■□□ 2.02
VPS28-212ENST00000530836 LMOD3Q0VAK6 560 aa27.65■■■□□ 2.02
VPS28-212ENST00000530836 DDB1Q16531 1140 aa27.65■■■□□ 2.02
VPS28-212ENST00000530836 KRT27Q7Z3Y8 459 aa27.65■■■□□ 2.02
VPS28-212ENST00000530836 RAPGEF4Q8WZA2 1011 aa27.64■■■□□ 2.02
VPS28-212ENST00000530836 PHACTR3Q96KR7 559 aa27.64■■■□□ 2.02
VPS28-212ENST00000530836 IL16Q14005 1332 aa27.64■■■□□ 2.02
VPS28-212ENST00000530836 EXOC5O00471 708 aa27.63■■■□□ 2.01
VPS28-212ENST00000530836 RGPD2P0DJD1 1756 aa27.63■■■□□ 2.01
VPS28-212ENST00000530836 RCAN3Q9UKA8 241 aa27.63■■■□□ 2.01
VPS28-212ENST00000530836 TRIM35Q9UPQ4 493 aa27.63■■■□□ 2.01
VPS28-212ENST00000530836 CALD1Q05682 793 aaKnown RBP27.62■■■□□ 2.01
VPS28-212ENST00000530836 MYH16Q9H6N6 1097 aa27.62■■■□□ 2.01
VPS28-212ENST00000530836 RNF123Q5XPI4 1314 aa27.61■■■□□ 2.01
VPS28-212ENST00000530836 AEBP1Q8IUX7 1158 aa27.61■■■□□ 2.01
VPS28-212ENST00000530836 TATP17735 454 aaPredicted RBP27.6■■■□□ 2.01
VPS28-212ENST00000530836 MEGF6O75095 1541 aa27.59■■■□□ 2.01
VPS28-212ENST00000530836 SPINK5Q9NQ38 1064 aaPredicted RBP27.59■■■□□ 2.01
VPS28-212ENST00000530836 PARP4Q9UKK3 1724 aaKnown RBP27.57■■■□□ 2
VPS28-212ENST00000530836 OVOS2A0A0G2JMS6 1433 aa27.57■■■□□ 2
VPS28-212ENST00000530836 ZCRB1Q8TBF4 217 aaKnown RBP27.56■■■□□ 2
VPS28-212ENST00000530836 FKBP8Q14318 412 aa27.56■■■□□ 2
VPS28-212ENST00000530836 ERICH6BQ5W0A0 696 aa27.56■■■□□ 2
VPS28-212ENST00000530836 MARCH10Q8NA82 808 aaPredicted RBP27.55■■■□□ 2
VPS28-212ENST00000530836 TNS2Q63HR2 1409 aa27.55■■■□□ 2
VPS28-212ENST00000530836 WNK3Q9BYP7 1800 aa27.54■■■□□ 2
VPS28-212ENST00000530836 BRWD3Q6RI45 1802 aa27.53■■■□□ 2
VPS28-212ENST00000530836 FAM182BQ5T319 152 aa27.53■■■□□ 2
VPS28-212ENST00000530836 GAS2L2Q8NHY3 880 aa27.53■■■□□ 2
VPS28-212ENST00000530836 LRRC37A3O60309 1634 aa27.52■■■□□ 2
VPS28-212ENST00000530836 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.52■■■□□ 2
VPS28-212ENST00000530836 PLEKHG2Q9H7P9 1386 aa27.52■■■□□ 2
VPS28-212ENST00000530836 FAM196AQ6ZSG2 479 aa27.51■■□□□ 1.99
VPS28-212ENST00000530836 DDX54Q8TDD1 881 aaKnown RBP27.51■■□□□ 1.99
VPS28-212ENST00000530836 SPG7Q9UQ90 795 aa27.5■■□□□ 1.99
VPS28-212ENST00000530836 CT47B1P0C2W7 299 aaPredicted RBP27.49■■□□□ 1.99
VPS28-212ENST00000530836 HTATSF1O43719 755 aaKnown RBP27.48■■□□□ 1.99
VPS28-212ENST00000530836 PLEKHO1Q53GL0 409 aaPredicted RBP27.48■■□□□ 1.99
VPS28-212ENST00000530836 RRP1P56182 461 aaKnown RBP27.47■■□□□ 1.99
VPS28-212ENST00000530836 AMOTQ4VCS5 1084 aa27.47■■□□□ 1.99
VPS28-212ENST00000530836 EP400Q96L91 3159 aa27.47■■□□□ 1.99
VPS28-212ENST00000530836 IFT57Q9NWB7 429 aa27.46■■□□□ 1.99
VPS28-212ENST00000530836 DLG5Q8TDM6 1919 aa27.46■■□□□ 1.99
VPS28-212ENST00000530836 PCDH11XQ9BZA7 1347 aa27.46■■□□□ 1.99
VPS28-212ENST00000530836 PCDH11YQ9BZA8 1340 aa27.46■■□□□ 1.99
VPS28-212ENST00000530836 GNAI1P63096 354 aa27.45■■□□□ 1.99
VPS28-212ENST00000530836 MTHFSDQ2M296 383 aaKnown RBP27.45■■□□□ 1.99
VPS28-212ENST00000530836 CYP27B1O15528 508 aa27.45■■□□□ 1.98
VPS28-212ENST00000530836 FANCIQ9NVI1 1328 aa27.44■■□□□ 1.98
VPS28-212ENST00000530836 BCL9O00512 1426 aa27.44■■□□□ 1.98
VPS28-212ENST00000530836 RTF1Q92541 710 aaKnown RBP27.43■■□□□ 1.98
VPS28-212ENST00000530836 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.42■■□□□ 1.98
VPS28-212ENST00000530836 CFAP44Q96MT7 982 aa27.41■■□□□ 1.98
VPS28-212ENST00000530836 IFNL2Q8IZJ0 200 aa27.41■■□□□ 1.98
VPS28-212ENST00000530836 UPF1Q92900 1129 aaKnown RBP eCLIP27.41■■□□□ 1.98
VPS28-212ENST00000530836 SOCS7O14512 581 aa27.4■■□□□ 1.98
VPS28-212ENST00000530836 ZNF853P0CG23 659 aa27.4■■□□□ 1.98
VPS28-212ENST00000530836 PHKG2P15735 406 aa27.39■■□□□ 1.98
VPS28-212ENST00000530836 NKX1-1Q15270 411 aaPredicted RBP27.39■■□□□ 1.98
VPS28-212ENST00000530836 ZNF530Q6P9A1 599 aaPredicted RBP27.39■■□□□ 1.98
VPS28-212ENST00000530836 PKD1L3Q7Z443 1732 aa27.38■■□□□ 1.97
VPS28-212ENST00000530836 GNAT3A8MTJ3 354 aa27.38■■□□□ 1.97
VPS28-212ENST00000530836 CCDC125Q86Z20 511 aa27.38■■□□□ 1.97
VPS28-212ENST00000530836 TRIM37O94972 964 aa27.37■■□□□ 1.97
VPS28-212ENST00000530836 TSR2Q969E8 191 aaKnown RBP27.37■■□□□ 1.97
VPS28-212ENST00000530836 MAP3K5Q99683 1374 aa27.36■■□□□ 1.97
VPS28-212ENST00000530836 SHANK3Q9BYB0 1731 aa27.36■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms