RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 NUDCQ9Y266 331 aa28.58■■■□□ 2.17
CAPN1-220ENST00000530567 PLEKHG2Q9H7P9 1386 aa28.57■■■□□ 2.16
CAPN1-220ENST00000530567 CCDC184Q52MB2 194 aa28.57■■■□□ 2.16
CAPN1-220ENST00000530567 DIEXFQ68CQ4 756 aaKnown RBP28.57■■■□□ 2.16
CAPN1-220ENST00000530567 EXOC5O00471 708 aa28.56■■■□□ 2.16
CAPN1-220ENST00000530567 PDE3BQ13370 1112 aa28.54■■■□□ 2.16
CAPN1-220ENST00000530567 U2AF1L5P0DN76 240 aaPredicted RBP28.53■■■□□ 2.16
CAPN1-220ENST00000530567 U2AF1Q01081 240 aaKnown RBP eCLIP28.53■■■□□ 2.16
CAPN1-220ENST00000530567 MARCH10Q8NA82 808 aaPredicted RBP28.53■■■□□ 2.16
CAPN1-220ENST00000530567 ZCRB1Q8TBF4 217 aaKnown RBP28.53■■■□□ 2.16
CAPN1-220ENST00000530567 EP400Q96L91 3159 aa28.53■■■□□ 2.16
CAPN1-220ENST00000530567 FAM182BQ5T319 152 aa28.52■■■□□ 2.16
CAPN1-220ENST00000530567 RSPH6AQ9H0K4 717 aa28.52■■■□□ 2.16
CAPN1-220ENST00000530567 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.51■■■□□ 2.15
CAPN1-220ENST00000530567 CYP27B1O15528 508 aa28.47■■■□□ 2.15
CAPN1-220ENST00000530567 DDX54Q8TDD1 881 aaKnown RBP28.47■■■□□ 2.15
CAPN1-220ENST00000530567 BCL9O00512 1426 aa28.47■■■□□ 2.15
CAPN1-220ENST00000530567 PCDH11XQ9BZA7 1347 aa28.46■■■□□ 2.15
CAPN1-220ENST00000530567 PCDH11YQ9BZA8 1340 aa28.46■■■□□ 2.15
CAPN1-220ENST00000530567 FCHSD2O94868 740 aa28.46■■■□□ 2.15
CAPN1-220ENST00000530567 PRKAR2BP31323 418 aa28.46■■■□□ 2.15
CAPN1-220ENST00000530567 SPG7Q9UQ90 795 aa28.46■■■□□ 2.15
CAPN1-220ENST00000530567 PLEKHO1Q53GL0 409 aaPredicted RBP28.44■■■□□ 2.14
CAPN1-220ENST00000530567 MRS2Q9HD23 443 aa28.44■■■□□ 2.14
CAPN1-220ENST00000530567 AMOTQ4VCS5 1084 aa28.43■■■□□ 2.14
CAPN1-220ENST00000530567 FAM196AQ6ZSG2 479 aa28.43■■■□□ 2.14
CAPN1-220ENST00000530567 SBF2Q86WG5 1849 aa28.42■■■□□ 2.14
CAPN1-220ENST00000530567 PHACTR3Q96KR7 559 aa28.42■■■□□ 2.14
CAPN1-220ENST00000530567 PLEKHF1Q96S99 279 aa28.42■■■□□ 2.14
CAPN1-220ENST00000530567 PHKG2P15735 406 aa28.4■■■□□ 2.14
CAPN1-220ENST00000530567 WDR43Q15061 677 aaKnown RBP eCLIP28.4■■■□□ 2.14
CAPN1-220ENST00000530567 MTHFSDQ2M296 383 aaKnown RBP28.4■■■□□ 2.14
CAPN1-220ENST00000530567 ZNF530Q6P9A1 599 aaPredicted RBP28.4■■■□□ 2.14
CAPN1-220ENST00000530567 TOGARAM1Q9Y4F4 1720 aa28.39■■■□□ 2.14
CAPN1-220ENST00000530567 PNISRQ8TF01 805 aaKnown RBP28.39■■■□□ 2.14
CAPN1-220ENST00000530567 ADAMTS8Q9UP79 889 aa28.39■■■□□ 2.14
CAPN1-220ENST00000530567 DOT1LQ8TEK3 1739 aa28.38■■■□□ 2.13
CAPN1-220ENST00000530567 NKX1-1Q15270 411 aaPredicted RBP28.38■■■□□ 2.13
CAPN1-220ENST00000530567 IFNL2Q8IZJ0 200 aa28.37■■■□□ 2.13
CAPN1-220ENST00000530567 MIER1Q8N108 512 aa28.37■■■□□ 2.13
CAPN1-220ENST00000530567 NHSQ6T4R5 1651 aa28.37■■■□□ 2.13
CAPN1-220ENST00000530567 TNS1Q9HBL0 1735 aaKnown RBP28.35■■■□□ 2.13
CAPN1-220ENST00000530567 KDM6AO15550 1401 aaPredicted RBP28.34■■■□□ 2.13
CAPN1-220ENST00000530567 CCER2I3L3R5 266 aa28.34■■■□□ 2.13
CAPN1-220ENST00000530567 PTF1AQ7RTS3 328 aa28.33■■■□□ 2.13
CAPN1-220ENST00000530567 GAS2L2Q8NHY3 880 aa28.33■■■□□ 2.13
CAPN1-220ENST00000530567 ADAMTS7Q9UKP4 1686 aa28.32■■■□□ 2.12
CAPN1-220ENST00000530567 AKAP4Q5JQC9 854 aa28.32■■■□□ 2.12
CAPN1-220ENST00000530567 UPF1Q92900 1129 aaKnown RBP eCLIP28.32■■■□□ 2.122e-10■■■■□ 24.6
CAPN1-220ENST00000530567 TRIM37O94972 964 aa28.31■■■□□ 2.12
CAPN1-220ENST00000530567 C1orf141Q5JVX7 400 aa28.31■■■□□ 2.12
CAPN1-220ENST00000530567 ACSBG1Q96GR2 724 aa28.31■■■□□ 2.12
CAPN1-220ENST00000530567 PNNQ9H307 717 aaKnown RBP28.31■■■□□ 2.12
CAPN1-220ENST00000530567 KCNQ2O43526 872 aa28.3■■■□□ 2.12
CAPN1-220ENST00000530567 CCDC146Q8IYE0 955 aa28.3■■■□□ 2.12
CAPN1-220ENST00000530567 MAP3K5Q99683 1374 aa28.29■■■□□ 2.12
CAPN1-220ENST00000530567 SCN11AQ9UI33 1791 aa28.29■■■□□ 2.12
CAPN1-220ENST00000530567 ITGB4P16144 1822 aa28.29■■■□□ 2.12
CAPN1-220ENST00000530567 HSP90AB1P08238 724 aaKnown RBP28.28■■■□□ 2.12
CAPN1-220ENST00000530567 DCAF5Q96JK2 942 aa28.28■■■□□ 2.12
CAPN1-220ENST00000530567 VIRMAQ69YN4 1812 aaKnown RBP28.28■■■□□ 2.12
CAPN1-220ENST00000530567 KAT6BQ8WYB5 2073 aa28.28■■■□□ 2.12
CAPN1-220ENST00000530567 MAPK8IP3Q9UPT6 1336 aa28.27■■■□□ 2.12
CAPN1-220ENST00000530567 DLG5Q8TDM6 1919 aa28.27■■■□□ 2.12
CAPN1-220ENST00000530567 RUNDC1Q96C34 613 aa28.27■■■□□ 2.12
CAPN1-220ENST00000530567 MPRIPQ6WCQ1 1025 aa28.26■■■□□ 2.12
CAPN1-220ENST00000530567 BCL11BQ9C0K0 894 aaPredicted RBP28.26■■■□□ 2.12
CAPN1-220ENST00000530567 BTAF1O14981 1849 aa28.26■■■□□ 2.11
CAPN1-220ENST00000530567 PRIM1P49642 420 aaKnown RBP28.26■■■□□ 2.11
CAPN1-220ENST00000530567 SOCS7O14512 581 aa28.25■■■□□ 2.11
CAPN1-220ENST00000530567 NEFMP07197 916 aa28.25■■■□□ 2.11
CAPN1-220ENST00000530567 NFE2L2Q16236 605 aa28.25■■■□□ 2.11
CAPN1-220ENST00000530567 GNAT3A8MTJ3 354 aa28.24■■■□□ 2.11
CAPN1-220ENST00000530567 MRC1P22897 1456 aa28.24■■■□□ 2.11
CAPN1-220ENST00000530567 CCDC125Q86Z20 511 aa28.23■■■□□ 2.11
CAPN1-220ENST00000530567 LGR6Q9HBX8 967 aa28.23■■■□□ 2.11
CAPN1-220ENST00000530567 RNMTO43148 476 aaKnown RBP28.22■■■□□ 2.11
CAPN1-220ENST00000530567 SYTL4Q96C24 671 aaPredicted RBP28.21■■■□□ 2.11
CAPN1-220ENST00000530567 ERVV-2B6SEH9 535 aa28.2■■■□□ 2.11
CAPN1-220ENST00000530567 TMPOP42166 694 aaKnown RBP28.2■■■□□ 2.11
CAPN1-220ENST00000530567 FAM9BQ8IZU0 186 aa28.2■■■□□ 2.11
CAPN1-220ENST00000530567 IL17REQ8NFR9 667 aa28.2■■■□□ 2.11
CAPN1-220ENST00000530567 CEMIPQ8WUJ3 1361 aa28.2■■■□□ 2.1
CAPN1-220ENST00000530567 PIGBQ92521 554 aa28.18■■■□□ 2.1
CAPN1-220ENST00000530567 RRP7AQ9Y3A4 280 aaKnown RBP28.18■■■□□ 2.1
CAPN1-220ENST00000530567 RGPD3A6NKT7 1758 aaPredicted RBP28.17■■■□□ 2.1
CAPN1-220ENST00000530567 SIPA1L3O60292 1781 aaPredicted RBP28.17■■■□□ 2.1
CAPN1-220ENST00000530567 RGPD4Q7Z3J3 1758 aa28.17■■■□□ 2.1
CAPN1-220ENST00000530567 HTATSF1O43719 755 aaKnown RBP28.17■■■□□ 2.1
CAPN1-220ENST00000530567 APBA3O96018 575 aa28.17■■■□□ 2.1
CAPN1-220ENST00000530567 APAF1O14727 1248 aa28.16■■■□□ 2.1
CAPN1-220ENST00000530567 SF3B2Q13435 895 aaKnown RBP28.16■■■□□ 2.1
CAPN1-220ENST00000530567 DEFB132Q7Z7B7 95 aa28.16■■■□□ 2.1
CAPN1-220ENST00000530567 TMOD3Q9NYL9 352 aa28.16■■■□□ 2.1
CAPN1-220ENST00000530567 DCTN1Q14203 1278 aa28.15■■■□□ 2.1
CAPN1-220ENST00000530567 MCM10Q7L590 875 aa28.15■■■□□ 2.1
CAPN1-220ENST00000530567 RIPK4P57078 832 aa28.14■■■□□ 2.1
CAPN1-220ENST00000530567 CABP4P57796 275 aa28.14■■■□□ 2.1
CAPN1-220ENST00000530567 SLC52A2Q9HAB3 445 aa28.14■■■□□ 2.1
CAPN1-220ENST00000530567 NFATC2IPQ8NCF5 419 aa28.13■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms