RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 HTATSF1O43719 755 aaKnown RBP26.55■■□□□ 1.84
VPS28-209ENST00000528142 NBPF6Q5VWK0 638 aa26.55■■□□□ 1.84
VPS28-209ENST00000528142 ATF7IPQ6VMQ6 1270 aa26.55■■□□□ 1.84
VPS28-209ENST00000528142 C8orf58Q8NAV2 365 aa26.55■■□□□ 1.84
VPS28-209ENST00000528142 NBPF4Q96M43 638 aa26.55■■□□□ 1.84
VPS28-209ENST00000528142 KIF16BQ96L93 1317 aa26.55■■□□□ 1.84
VPS28-209ENST00000528142 MED1Q15648 1581 aaPredicted RBP26.54■■□□□ 1.84
VPS28-209ENST00000528142 TWISTNBQ3B726 338 aaPredicted RBP26.54■■□□□ 1.84
VPS28-209ENST00000528142 ZBTB7CA1YPR0 619 aa26.53■■□□□ 1.84
VPS28-209ENST00000528142 MVPQ14764 893 aaKnown RBP26.53■■□□□ 1.84
VPS28-209ENST00000528142 SOS2Q07890 1332 aaPredicted RBP26.53■■□□□ 1.84
VPS28-209ENST00000528142 USHBP1Q8N6Y0 703 aa26.53■■□□□ 1.84
VPS28-209ENST00000528142 RTF1Q92541 710 aaKnown RBP26.53■■□□□ 1.84
VPS28-209ENST00000528142 NHSL1Q5SYE7 1610 aa26.53■■□□□ 1.84
VPS28-209ENST00000528142 SPATA31A3Q5VYP0 1347 aa26.52■■□□□ 1.84
VPS28-209ENST00000528142 IPO8O15397 1037 aaKnown RBP26.52■■□□□ 1.84
VPS28-209ENST00000528142 PLEKHG5O94827 1062 aa26.52■■□□□ 1.84
VPS28-209ENST00000528142 MRPL50Q8N5N7 158 aaKnown RBP26.52■■□□□ 1.84
VPS28-209ENST00000528142 TNS3Q68CZ2 1445 aa26.52■■□□□ 1.84
VPS28-209ENST00000528142 FTSJ3Q8IY81 847 aaKnown RBP26.51■■□□□ 1.83
VPS28-209ENST00000528142 ELL2O00472 640 aaPredicted RBP26.51■■□□□ 1.83
VPS28-209ENST00000528142 ROBO1Q9Y6N7 1651 aa26.49■■□□□ 1.83
VPS28-209ENST00000528142 GNAT3A8MTJ3 354 aa26.49■■□□□ 1.83
VPS28-209ENST00000528142 TCERG1O14776 1098 aaKnown RBP26.49■■□□□ 1.83
VPS28-209ENST00000528142 NCAPD2Q15021 1401 aa26.49■■□□□ 1.83
VPS28-209ENST00000528142 KIAA0232Q92628 1395 aa26.49■■□□□ 1.83
VPS28-209ENST00000528142 AXIN2Q9Y2T1 843 aa26.49■■□□□ 1.83
VPS28-209ENST00000528142 CRYBG1Q9Y4K1 1723 aa26.48■■□□□ 1.83
VPS28-209ENST00000528142 LRRC59Q96AG4 307 aaKnown RBP26.48■■□□□ 1.83
VPS28-209ENST00000528142 IGHDP01880 384 aa26.47■■□□□ 1.83
VPS28-209ENST00000528142 ARHGAP45Q92619 1136 aa26.47■■□□□ 1.83
VPS28-209ENST00000528142 MAP3K5Q99683 1374 aa26.47■■□□□ 1.83
VPS28-209ENST00000528142 ANKRD24Q8TF21 1146 aa26.46■■□□□ 1.83
VPS28-209ENST00000528142 CABLES1Q8TDN4 633 aa26.45■■□□□ 1.82
VPS28-209ENST00000528142 PCDHB15Q9Y5E8 787 aa26.44■■□□□ 1.82
VPS28-209ENST00000528142 LRRC37A3O60309 1634 aa26.44■■□□□ 1.82
VPS28-209ENST00000528142 ZC3H6P61129 1189 aaKnown RBP26.44■■□□□ 1.82
VPS28-209ENST00000528142 KRT24Q2M2I5 525 aa26.44■■□□□ 1.82
VPS28-209ENST00000528142 TMEM57Q8N5G2 664 aa26.44■■□□□ 1.82
VPS28-209ENST00000528142 IL17REQ8NFR9 667 aa26.44■■□□□ 1.82
VPS28-209ENST00000528142 DDX19BQ9UMR2 479 aa26.43■■□□□ 1.82
VPS28-209ENST00000528142 HAP1P54257 671 aaPredicted RBP26.42■■□□□ 1.82
VPS28-209ENST00000528142 SKAP1Q86WV1 359 aa26.42■■□□□ 1.82
VPS28-209ENST00000528142 MIS18AQ9NYP9 233 aa26.42■■□□□ 1.82
VPS28-209ENST00000528142 TSPYL4Q9UJ04 414 aa26.42■■□□□ 1.82
VPS28-209ENST00000528142 ITPRIPQ8IWB1 547 aa26.41■■□□□ 1.82
VPS28-209ENST00000528142 CAMTA1Q9Y6Y1 1673 aa26.4■■□□□ 1.82
VPS28-209ENST00000528142 RGPD2P0DJD1 1756 aa26.4■■□□□ 1.82
VPS28-209ENST00000528142 ERBB3P21860 1342 aa26.39■■□□□ 1.82
VPS28-209ENST00000528142 AHDC1Q5TGY3 1603 aaPredicted RBP26.38■■□□□ 1.81
VPS28-209ENST00000528142 BABAM1Q9NWV8 329 aa26.38■■□□□ 1.81
VPS28-209ENST00000528142 CEMIPQ8WUJ3 1361 aa26.37■■□□□ 1.81
VPS28-209ENST00000528142 PLEKHO1Q53GL0 409 aaPredicted RBP26.37■■□□□ 1.81
VPS28-209ENST00000528142 ABCC4O15439 1325 aa26.36■■□□□ 1.81
VPS28-209ENST00000528142 AMOTQ4VCS5 1084 aa26.36■■□□□ 1.81
VPS28-209ENST00000528142 TAF7Q15545 349 aaPredicted RBP26.35■■□□□ 1.81
VPS28-209ENST00000528142 ZBTB40Q9NUA8 1239 aa26.35■■□□□ 1.81
VPS28-209ENST00000528142 API5Q9BZZ5 524 aaKnown RBP26.35■■□□□ 1.81
VPS28-209ENST00000528142 LMO7Q8WWI1 1683 aa26.35■■□□□ 1.81
VPS28-209ENST00000528142 COL18A1P39060 1754 aa26.34■■□□□ 1.81
VPS28-209ENST00000528142 ABCA3Q99758 1704 aa26.34■■□□□ 1.81
VPS28-209ENST00000528142 CPDO75976 1380 aa26.34■■□□□ 1.81
VPS28-209ENST00000528142 AKAP4Q5JQC9 854 aa26.34■■□□□ 1.81
VPS28-209ENST00000528142 ABCC6O95255 1503 aa26.33■■□□□ 1.81
VPS28-209ENST00000528142 RGPD5Q99666 1765 aa26.33■■□□□ 1.81
VPS28-209ENST00000528142 RWDD1Q9H446 243 aaPredicted RBP26.32■■□□□ 1.8
VPS28-209ENST00000528142 PIP4K2BP78356 416 aa26.32■■□□□ 1.8
VPS28-209ENST00000528142 ZNF530Q6P9A1 599 aaPredicted RBP26.32■■□□□ 1.8
VPS28-209ENST00000528142 TOM1O60784 492 aa26.3■■□□□ 1.8
VPS28-209ENST00000528142 LGR6Q9HBX8 967 aa26.3■■□□□ 1.8
VPS28-209ENST00000528142 ZBTB7BO15156 539 aaPredicted RBP26.3■■□□□ 1.8
VPS28-209ENST00000528142 COL16A1Q07092 1604 aaPredicted RBP26.29■■□□□ 1.8
VPS28-209ENST00000528142 UBAP1LF5GYI3 381 aa26.29■■□□□ 1.8
VPS28-209ENST00000528142 CERKQ8TCT0 537 aa26.29■■□□□ 1.8
VPS28-209ENST00000528142 PDE4AP27815 886 aa26.28■■□□□ 1.8
VPS28-209ENST00000528142 HDAC1Q13547 482 aaPredicted RBP26.28■■□□□ 1.8
VPS28-209ENST00000528142 SOS1Q07889 1333 aaPredicted RBP26.28■■□□□ 1.8
VPS28-209ENST00000528142 CHRNA2Q15822 529 aa26.28■■□□□ 1.8
VPS28-209ENST00000528142 RGS12O14924 1447 aa26.27■■□□□ 1.8
VPS28-209ENST00000528142 PHLPP1O60346 1717 aa26.27■■□□□ 1.8
VPS28-209ENST00000528142 BACH2Q9BYV9 841 aa26.26■■□□□ 1.79
VPS28-209ENST00000528142 CHMP4BQ9H444 224 aaKnown RBP26.26■■□□□ 1.79
VPS28-209ENST00000528142 NLRP2Q9NX02 1062 aa26.26■■□□□ 1.79
VPS28-209ENST00000528142 PTPRCP08575 1304 aa26.26■■□□□ 1.79
VPS28-209ENST00000528142 SLC4A2P04920 1241 aa26.25■■□□□ 1.79
VPS28-209ENST00000528142 C1orf141Q5JVX7 400 aa26.25■■□□□ 1.79
VPS28-209ENST00000528142 OVOS2A0A0G2JMS6 1433 aa26.24■■□□□ 1.79
VPS28-209ENST00000528142 RNMTO43148 476 aaKnown RBP26.24■■□□□ 1.79
VPS28-209ENST00000528142 INTS3Q68E01 1043 aaKnown RBP26.23■■□□□ 1.79
VPS28-209ENST00000528142 MPRIPQ6WCQ1 1025 aa26.23■■□□□ 1.79
VPS28-209ENST00000528142 FAM208AQ9UK61 1670 aaKnown RBP26.23■■□□□ 1.79
VPS28-209ENST00000528142 RGS3P49796 1198 aa26.23■■□□□ 1.79
VPS28-209ENST00000528142 COL22A1Q8NFW1 1626 aaPredicted RBP26.22■■□□□ 1.79
VPS28-209ENST00000528142 CSB-PGBD3P0DP91 1061 aa26.21■■□□□ 1.79
VPS28-209ENST00000528142 RAPGEF4Q8WZA2 1011 aa26.21■■□□□ 1.79
VPS28-209ENST00000528142 PLEKHG2Q9H7P9 1386 aa26.2■■□□□ 1.79
VPS28-209ENST00000528142 CCDC30Q5VVM6 783 aa26.2■■□□□ 1.78
VPS28-209ENST00000528142 PDZRN3Q9UPQ7 1066 aa26.2■■□□□ 1.78
VPS28-209ENST00000528142 EIF4A1P60842 406 aaKnown RBP26.19■■□□□ 1.78
VPS28-209ENST00000528142 TEFQ10587 303 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms