RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 RAPGEF4Q8WZA2 1011 aa18.27■□□□□ 0.52
CD44-224ENST00000526669 RSPH6AQ9H0K4 717 aa18.27■□□□□ 0.52
CD44-224ENST00000526669 IL2RBP14784 551 aa18.26■□□□□ 0.51
CD44-224ENST00000526669 TATP17735 454 aaPredicted RBP18.26■□□□□ 0.51
CD44-224ENST00000526669 PRKAR2BP31323 418 aa18.26■□□□□ 0.51
CD44-224ENST00000526669 OVOS2A0A0G2JMS6 1433 aa18.25■□□□□ 0.51
CD44-224ENST00000526669 RBM6P78332 1123 aaKnown RBP18.25■□□□□ 0.51
CD44-224ENST00000526669 THRAP3Q9Y2W1 955 aaKnown RBP18.25■□□□□ 0.51
CD44-224ENST00000526669 SENP3-EIF4A1A0A087X0R7 540 aa18.24■□□□□ 0.51
CD44-224ENST00000526669 BARGINQ6ZT62 677 aa18.24■□□□□ 0.51
CD44-224ENST00000526669 RXRBP28702 533 aa18.23■□□□□ 0.51
CD44-224ENST00000526669 SBF2Q86WG5 1849 aa18.23■□□□□ 0.51
CD44-224ENST00000526669 SCN11AQ9UI33 1791 aa18.22■□□□□ 0.51
CD44-224ENST00000526669 ITGB4P16144 1822 aa18.22■□□□□ 0.51
CD44-224ENST00000526669 FCHSD2O94868 740 aa18.22■□□□□ 0.51
CD44-224ENST00000526669 RGS12O14924 1447 aa18.22■□□□□ 0.51
CD44-224ENST00000526669 TNS2Q63HR2 1409 aa18.22■□□□□ 0.51
CD44-224ENST00000526669 DOT1LQ8TEK3 1739 aa18.21■□□□□ 0.51
CD44-224ENST00000526669 PHACTR3Q96KR7 559 aa18.21■□□□□ 0.51
CD44-224ENST00000526669 SEPT12Q8IYM1 358 aa18.2■□□□□ 0.5
CD44-224ENST00000526669 PLEKHF1Q96S99 279 aa18.2■□□□□ 0.5
CD44-224ENST00000526669 TOGARAM1Q9Y4F4 1720 aa18.2■□□□□ 0.5
CD44-224ENST00000526669 MAPK8IP3Q9UPT6 1336 aa18.2■□□□□ 0.5
CD44-224ENST00000526669 DDB1Q16531 1140 aa18.19■□□□□ 0.5
CD44-224ENST00000526669 CDCA7Q9BWT1 371 aaPredicted RBP18.19■□□□□ 0.5
CD44-224ENST00000526669 NEFMP07197 916 aa18.18■□□□□ 0.5
CD44-224ENST00000526669 PLEKHO1Q53GL0 409 aaPredicted RBP18.18■□□□□ 0.5
CD44-224ENST00000526669 ZNF530Q6P9A1 599 aaPredicted RBP18.18■□□□□ 0.5
CD44-224ENST00000526669 ZCRB1Q8TBF4 217 aaKnown RBP18.18■□□□□ 0.5
CD44-224ENST00000526669 RUNDC1Q96C34 613 aa18.18■□□□□ 0.5
CD44-224ENST00000526669 EXOC5O00471 708 aa18.17■□□□□ 0.5
CD44-224ENST00000526669 MTHFSDQ2M296 383 aaKnown RBP18.17■□□□□ 0.5
CD44-224ENST00000526669 DDX54Q8TDD1 881 aaKnown RBP18.17■□□□□ 0.5
CD44-224ENST00000526669 PNNQ9H307 717 aaKnown RBP18.17■□□□□ 0.5
CD44-224ENST00000526669 ONECUT3O60422 494 aaPredicted RBP18.16■□□□□ 0.5
CD44-224ENST00000526669 SPG7Q9UQ90 795 aa18.16■□□□□ 0.5
CD44-224ENST00000526669 RRP7AQ9Y3A4 280 aaKnown RBP18.16■□□□□ 0.5
CD44-224ENST00000526669 PCDH11XQ9BZA7 1347 aa18.15■□□□□ 0.5
CD44-224ENST00000526669 PCDH11YQ9BZA8 1340 aa18.15■□□□□ 0.5
CD44-224ENST00000526669 APAF1O14727 1248 aa18.14■□□□□ 0.49
CD44-224ENST00000526669 CYP27B1O15528 508 aa18.14■□□□□ 0.49
CD44-224ENST00000526669 NEUROD2Q15784 382 aa18.14■□□□□ 0.49
CD44-224ENST00000526669 AMOTQ4VCS5 1084 aa18.14■□□□□ 0.49
CD44-224ENST00000526669 FAM182BQ5T319 152 aa18.14■□□□□ 0.49
CD44-224ENST00000526669 SIPA1L3O60292 1781 aaPredicted RBP18.14■□□□□ 0.49
CD44-224ENST00000526669 PDE3BQ13370 1112 aa18.13■□□□□ 0.49
CD44-224ENST00000526669 NFE2L2Q16236 605 aa18.13■□□□□ 0.49
CD44-224ENST00000526669 MARCH10Q8NA82 808 aaPredicted RBP18.13■□□□□ 0.49
CD44-224ENST00000526669 GAS2L2Q8NHY3 880 aa18.13■□□□□ 0.49
CD44-224ENST00000526669 ADAMTS7Q9UKP4 1686 aa18.12■□□□□ 0.49
CD44-224ENST00000526669 C1orf141Q5JVX7 400 aa18.12■□□□□ 0.49
CD44-224ENST00000526669 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.12■□□□□ 0.49
CD44-224ENST00000526669 SALL2Q9Y467 1007 aaPredicted RBP18.12■□□□□ 0.49
CD44-224ENST00000526669 PLEKHG2Q9H7P9 1386 aa18.12■□□□□ 0.49
CD44-224ENST00000526669 PHKG2P15735 406 aa18.11■□□□□ 0.49
CD44-224ENST00000526669 TMPOP42166 694 aaKnown RBP18.11■□□□□ 0.49
CD44-224ENST00000526669 IFNL2Q8IZJ0 200 aa18.11■□□□□ 0.49
CD44-224ENST00000526669 MAP3K5Q99683 1374 aa18.11■□□□□ 0.49
CD44-224ENST00000526669 BTAF1O14981 1849 aa18.1■□□□□ 0.49
CD44-224ENST00000526669 KRT27Q7Z3Y8 459 aa18.1■□□□□ 0.49
CD44-224ENST00000526669 NHSQ6T4R5 1651 aa18.09■□□□□ 0.49
CD44-224ENST00000526669 KDM6AO15550 1401 aaPredicted RBP18.09■□□□□ 0.49
CD44-224ENST00000526669 RIPK4P57078 832 aa18.09■□□□□ 0.49
CD44-224ENST00000526669 AKAP4Q5JQC9 854 aa18.09■□□□□ 0.49
CD44-224ENST00000526669 MPRIPQ6WCQ1 1025 aa18.09■□□□□ 0.49
CD44-224ENST00000526669 DCTN1Q14203 1278 aa18.08■□□□□ 0.48
CD44-224ENST00000526669 GNAT3A8MTJ3 354 aa18.07■□□□□ 0.48
CD44-224ENST00000526669 ACSBG1Q96GR2 724 aa18.07■□□□□ 0.48
CD44-224ENST00000526669 MCM10Q7L590 875 aa18.06■□□□□ 0.48
CD44-224ENST00000526669 LGR6Q9HBX8 967 aa18.06■□□□□ 0.48
CD44-224ENST00000526669 RNMTO43148 476 aaKnown RBP18.05■□□□□ 0.48
CD44-224ENST00000526669 THUMPD2Q9BTF0 503 aaKnown RBP18.05■□□□□ 0.48
CD44-224ENST00000526669 TNS1Q9HBL0 1735 aaKnown RBP18.05■□□□□ 0.48
CD44-224ENST00000526669 HNRNPUQ00839 825 aaKnown RBP eCLIP18.04■□□□□ 0.48
CD44-224ENST00000526669 RTF1Q92541 710 aaKnown RBP18.04■□□□□ 0.48
CD44-224ENST00000526669 TRIM35Q9UPQ4 493 aa18.04■□□□□ 0.48
CD44-224ENST00000526669 EP400Q96L91 3159 aa18.04■□□□□ 0.48
CD44-224ENST00000526669 KDM3BQ7LBC6 1761 aa18.04■□□□□ 0.48
CD44-224ENST00000526669 HSP90AB1P08238 724 aaKnown RBP18.03■□□□□ 0.48
CD44-224ENST00000526669 NKX1-1Q15270 411 aaPredicted RBP18.03■□□□□ 0.48
CD44-224ENST00000526669 IL17REQ8NFR9 667 aa18.03■□□□□ 0.48
CD44-224ENST00000526669 YTHDC1Q96MU7 727 aaKnown RBP18.03■□□□□ 0.48
CD44-224ENST00000526669 MRC1P22897 1456 aa18.02■□□□□ 0.48
CD44-224ENST00000526669 PAPPAQ13219 1627 aa18.02■□□□□ 0.48
CD44-224ENST00000526669 SYTL4Q96C24 671 aaPredicted RBP18.02■□□□□ 0.48
CD44-224ENST00000526669 DCAF5Q96JK2 942 aa18.02■□□□□ 0.48
CD44-224ENST00000526669 LMOD3Q0VAK6 560 aa18.01■□□□□ 0.47
CD44-224ENST00000526669 UBR2Q8IWV8 1755 aa17.99■□□□□ 0.47
CD44-224ENST00000526669 KCNQ2O43526 872 aa17.99■□□□□ 0.47
CD44-224ENST00000526669 HTATSF1O43719 755 aaKnown RBP17.99■□□□□ 0.47
CD44-224ENST00000526669 PRIM1P49642 420 aaKnown RBP17.99■□□□□ 0.47
CD44-224ENST00000526669 FAM196AQ6ZSG2 479 aa17.99■□□□□ 0.47
CD44-224ENST00000526669 PTF1AQ7RTS3 328 aa17.99■□□□□ 0.47
CD44-224ENST00000526669 CEMIPQ8WUJ3 1361 aa17.99■□□□□ 0.47
CD44-224ENST00000526669 CABP4P57796 275 aa17.98■□□□□ 0.47
CD44-224ENST00000526669 TEFQ10587 303 aa17.98■□□□□ 0.47
CD44-224ENST00000526669 ILDR2Q71H61 639 aa17.98■□□□□ 0.47
CD44-224ENST00000526669 BCL9O00512 1426 aa17.98■□□□□ 0.47
CD44-224ENST00000526669 TRIM37O94972 964 aa17.97■□□□□ 0.47
CD44-224ENST00000526669 WWC1Q8IX03 1113 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms