RNA–Protein interactions for RNA: ENST00000524773.5

CAPN1-202, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-202ENST00000524773 ABCC4O15439 1325 aa16.2■□□□□ 0.18
CAPN1-202ENST00000524773 CD163L1Q9NR16 1453 aa16.2■□□□□ 0.18
CAPN1-202ENST00000524773 AEBP1Q8IUX7 1158 aa16.2■□□□□ 0.18
CAPN1-202ENST00000524773 MEIS3Q99687 375 aa16.2■□□□□ 0.18
CAPN1-202ENST00000524773 TPM2P07951 284 aa16.2■□□□□ 0.18
CAPN1-202ENST00000524773 PREX1Q8TCU6 1659 aa16.19■□□□□ 0.18
CAPN1-202ENST00000524773 MED14O60244 1454 aa16.19■□□□□ 0.18
CAPN1-202ENST00000524773 GNAI1P63096 354 aa16.19■□□□□ 0.18
CAPN1-202ENST00000524773 MCM10Q7L590 875 aa16.19■□□□□ 0.18
CAPN1-202ENST00000524773 SLC4A10Q6U841 1118 aa16.18■□□□□ 0.18
CAPN1-202ENST00000524773 TSC1Q92574 1164 aa16.18■□□□□ 0.18
CAPN1-202ENST00000524773 DCTPP1Q9H773 170 aa16.18■□□□□ 0.18
CAPN1-202ENST00000524773 ARHGEF40Q8TER5 1519 aa16.18■□□□□ 0.18
CAPN1-202ENST00000524773 ARHGEF28Q8N1W1 1705 aaKnown RBP16.18■□□□□ 0.18
CAPN1-202ENST00000524773 F6X3S4 739 aa16.17■□□□□ 0.18
CAPN1-202ENST00000524773 CYP2E1P05181 493 aaPredicted RBP16.17■□□□□ 0.18
CAPN1-202ENST00000524773 ZNF830Q96NB3 372 aaPredicted RBP16.17■□□□□ 0.18
CAPN1-202ENST00000524773 NEK4P51957 841 aa16.17■□□□□ 0.18
CAPN1-202ENST00000524773 ZNF445P59923 1031 aa16.17■□□□□ 0.18
CAPN1-202ENST00000524773 UQCRHLA0A096LP55 91 aa16.17■□□□□ 0.18
CAPN1-202ENST00000524773 UQCRHP07919 91 aa16.17■□□□□ 0.18
CAPN1-202ENST00000524773 NUCB2P80303 420 aa16.17■□□□□ 0.18
CAPN1-202ENST00000524773 LARP6Q9BRS8 491 aaKnown RBP16.17■□□□□ 0.18
CAPN1-202ENST00000524773 ESF1Q9H501 851 aaKnown RBP16.17■□□□□ 0.18
CAPN1-202ENST00000524773 INTS3Q68E01 1043 aaKnown RBP16.16■□□□□ 0.18
CAPN1-202ENST00000524773 FAM135BQ49AJ0 1406 aa16.16■□□□□ 0.18
CAPN1-202ENST00000524773 NUTM2FA1L443 756 aa16.16■□□□□ 0.18
CAPN1-202ENST00000524773 FAM177BA6PVY3 158 aa16.16■□□□□ 0.18
CAPN1-202ENST00000524773 IFT57Q9NWB7 429 aa16.16■□□□□ 0.18
CAPN1-202ENST00000524773 CEP85Q6P2H3 762 aa16.15■□□□□ 0.18
CAPN1-202ENST00000524773 PDCL3Q9H2J4 239 aa16.15■□□□□ 0.18
CAPN1-202ENST00000524773 STAG3Q9UJ98 1225 aa16.15■□□□□ 0.18
CAPN1-202ENST00000524773 PNPLA6Q8IY17 1366 aa16.15■□□□□ 0.18
CAPN1-202ENST00000524773 IL13P35225 146 aa16.15■□□□□ 0.18
CAPN1-202ENST00000524773 ARHGAP45Q92619 1136 aa16.15■□□□□ 0.18
CAPN1-202ENST00000524773 PALD1Q9ULE6 856 aa16.15■□□□□ 0.18
CAPN1-202ENST00000524773 EXOC6BQ9Y2D4 811 aa16.15■□□□□ 0.18
CAPN1-202ENST00000524773 CLTCQ00610 1675 aaKnown RBP16.15■□□□□ 0.18
CAPN1-202ENST00000524773 PTCH1Q13635 1447 aa16.15■□□□□ 0.18
CAPN1-202ENST00000524773 ZNF853P0CG23 659 aa16.14■□□□□ 0.17
CAPN1-202ENST00000524773 PTMSP20962 102 aa16.14■□□□□ 0.17
CAPN1-202ENST00000524773 C17orf53Q8N3J3 647 aaPredicted RBP16.14■□□□□ 0.17
CAPN1-202ENST00000524773 NECTIN2Q92692 538 aa16.14■□□□□ 0.17
CAPN1-202ENST00000524773 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.14■□□□□ 0.17
CAPN1-202ENST00000524773 CLEC17AQ6ZS10 378 aa16.14■□□□□ 0.17
CAPN1-202ENST00000524773 CFAP44Q96MT7 982 aa16.14■□□□□ 0.17
CAPN1-202ENST00000524773 UPF3BQ9BZI7 483 aaKnown RBP16.14■□□□□ 0.17
CAPN1-202ENST00000524773 API5Q9BZZ5 524 aaKnown RBP16.14■□□□□ 0.17
CAPN1-202ENST00000524773 PRDM10Q9NQV6 1147 aa16.14■□□□□ 0.17
CAPN1-202ENST00000524773 NEXMIFQ5QGS0 1516 aa16.14■□□□□ 0.17
CAPN1-202ENST00000524773 KNDC1Q76NI1 1749 aa16.14■□□□□ 0.17
CAPN1-202ENST00000524773 YTHDC2Q9H6S0 1430 aaKnown RBP16.14■□□□□ 0.17
CAPN1-202ENST00000524773 ST18O60284 1047 aa16.14■□□□□ 0.17
CAPN1-202ENST00000524773 MSH6P52701 1360 aa16.13■□□□□ 0.17
CAPN1-202ENST00000524773 NOL7Q9UMY1 257 aaKnown RBP16.13■□□□□ 0.17
CAPN1-202ENST00000524773 GADD45BO75293 160 aaPredicted RBP16.13■□□□□ 0.17
CAPN1-202ENST00000524773 AEBP2Q6ZN18 517 aaPredicted RBP16.13■□□□□ 0.17
CAPN1-202ENST00000524773 MYO5BQ9ULV0 1848 aa16.12■□□□□ 0.17
CAPN1-202ENST00000524773 BRPF1P55201 1214 aaPredicted RBP16.12■□□□□ 0.17
CAPN1-202ENST00000524773 G2E3Q7L622 706 aa16.12■□□□□ 0.17
CAPN1-202ENST00000524773 TMX3Q96JJ7 454 aa16.12■□□□□ 0.17
CAPN1-202ENST00000524773 ANKRD44Q8N8A2 993 aa16.12■□□□□ 0.17
CAPN1-202ENST00000524773 PIK3R4Q99570 1358 aa16.11■□□□□ 0.17
CAPN1-202ENST00000524773 PTMAP06454 111 aaKnown RBP16.11■□□□□ 0.17
CAPN1-202ENST00000524773 TMEM131LA2VDJ0 1609 aa16.11■□□□□ 0.17
CAPN1-202ENST00000524773 RILPL2Q969X0 211 aa16.11■□□□□ 0.17
CAPN1-202ENST00000524773 TRHP20396 242 aaPredicted RBP16.11■□□□□ 0.17
CAPN1-202ENST00000524773 SULT6B1Q6IMI4 303 aa16.11■□□□□ 0.17
CAPN1-202ENST00000524773 ZFYVE9O95405 1425 aa16.11■□□□□ 0.17
CAPN1-202ENST00000524773 MAP4K4O95819 1239 aaPredicted RBP16.1■□□□□ 0.17
CAPN1-202ENST00000524773 SLC4A2P04920 1241 aa16.1■□□□□ 0.17
CAPN1-202ENST00000524773 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.1■□□□□ 0.17
CAPN1-202ENST00000524773 PDLIM2Q96JY6 352 aa16.1■□□□□ 0.17
CAPN1-202ENST00000524773 PTPRMP28827 1452 aa16.1■□□□□ 0.17
CAPN1-202ENST00000524773 LRSAM1Q6UWE0 723 aa16.1■□□□□ 0.17
CAPN1-202ENST00000524773 FOXO3O43524 673 aa16.09■□□□□ 0.17
CAPN1-202ENST00000524773 CHMP4BQ9H444 224 aaKnown RBP16.09■□□□□ 0.17
CAPN1-202ENST00000524773 ZKSCAN5Q9Y2L8 839 aa16.09■□□□□ 0.17
CAPN1-202ENST00000524773 CASC1Q6TDU7 716 aa16.09■□□□□ 0.17
CAPN1-202ENST00000524773 ZNF428Q96B54 188 aa16.09■□□□□ 0.17
CAPN1-202ENST00000524773 ATP10DQ9P241 1426 aa16.09■□□□□ 0.17
CAPN1-202ENST00000524773 TRIM6-TRIM34B2RNG4 842 aa16.08■□□□□ 0.17
CAPN1-202ENST00000524773 ERC2O15083 957 aa16.08■□□□□ 0.17
CAPN1-202ENST00000524773 ANO2Q9NQ90 1003 aa16.08■□□□□ 0.17
CAPN1-202ENST00000524773 IBTKQ9P2D0 1353 aaPredicted RBP16.08■□□□□ 0.16
CAPN1-202ENST00000524773 PLCB2Q00722 1185 aa16.08■□□□□ 0.16
CAPN1-202ENST00000524773 IL25Q9H293 177 aa16.08■□□□□ 0.16
CAPN1-202ENST00000524773 RIMS2Q9UQ26 1411 aa16.07■□□□□ 0.16
CAPN1-202ENST00000524773 DNTTIP2Q5QJE6 756 aaKnown RBP16.07■□□□□ 0.16
CAPN1-202ENST00000524773 RTL1A6NKG5 1358 aa16.07■□□□□ 0.16
CAPN1-202ENST00000524773 PDE1AP54750 535 aa16.07■□□□□ 0.16
CAPN1-202ENST00000524773 UNC5CLQ8IV45 518 aa16.07■□□□□ 0.16
CAPN1-202ENST00000524773 TXNDC2Q86VQ3 553 aa16.06■□□□□ 0.16
CAPN1-202ENST00000524773 SPATA31D1Q6ZQQ2 1576 aa16.06■□□□□ 0.16
CAPN1-202ENST00000524773 REC8O95072 547 aa16.06■□□□□ 0.16
CAPN1-202ENST00000524773 CWC22Q9HCG8 908 aaKnown RBP16.06■□□□□ 0.16
CAPN1-202ENST00000524773 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.06■□□□□ 0.162e-6■□□□□ 9.3
CAPN1-202ENST00000524773 ZNF500O60304 480 aaPredicted RBP16.05■□□□□ 0.16
CAPN1-202ENST00000524773 TTC12Q9H892 705 aaPredicted RBP16.05■□□□□ 0.16
CAPN1-202ENST00000524773 USP25Q9UHP3 1055 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms