RNA–Protein interactions for RNA: ENST00000520493.1

SQLE-204, Transcript of squalene epoxidase, humanhuman

TSL 3

Gene SQLE, Length 737 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-204ENST00000520493 TRMT44Q8IYL2 757 aaKnown RBP8.65□□□□□ -1.02
SQLE-204ENST00000520493 SLC10A4Q96EP9 437 aa8.65□□□□□ -1.02
SQLE-204ENST00000520493 C1QTNF2Q9BXJ5 285 aa8.65□□□□□ -1.02
SQLE-204ENST00000520493 GPSM3Q9Y4H4 160 aa8.65□□□□□ -1.02
SQLE-204ENST00000520493 CCDC116Q8IYX3 515 aa8.64□□□□□ -1.03
SQLE-204ENST00000520493 HMX1Q9NP08 348 aaPredicted RBP8.64□□□□□ -1.03
SQLE-204ENST00000520493 CDV3Q9UKY7 258 aaKnown RBP8.64□□□□□ -1.03
SQLE-204ENST00000520493 MAP4K5Q9Y4K4 846 aa8.64□□□□□ -1.03
SQLE-204ENST00000520493 BANK1Q8NDB2 785 aa8.63□□□□□ -1.03
SQLE-204ENST00000520493 CTSOP43234 321 aaPredicted RBP8.62□□□□□ -1.03
SQLE-204ENST00000520493 ERFEQ4G0M1 354 aa8.62□□□□□ -1.03
SQLE-204ENST00000520493 EPS8L1Q8TE68 723 aa8.61□□□□□ -1.03
SQLE-204ENST00000520493 KRBA1A5PL33 1030 aa8.6□□□□□ -1.03
SQLE-204ENST00000520493 BCRP11274 1271 aa8.6□□□□□ -1.03
SQLE-204ENST00000520493 SENP3-EIF4A1A0A087X0R7 540 aa8.59□□□□□ -1.03
SQLE-204ENST00000520493 AGBL1Q96MI9 1066 aa8.59□□□□□ -1.03
SQLE-204ENST00000520493 INSM2Q96T92 566 aaPredicted RBP8.59□□□□□ -1.03
SQLE-204ENST00000520493 POLMQ9NP87 494 aaPredicted RBP8.59□□□□□ -1.03
SQLE-204ENST00000520493 CUEDC1Q9NWM3 386 aaPredicted RBP8.59□□□□□ -1.03
SQLE-204ENST00000520493 SOCS7O14512 581 aa8.58□□□□□ -1.04
SQLE-204ENST00000520493 NBPF20Q3BBV1 942 aa8.58□□□□□ -1.04
SQLE-204ENST00000520493 PPP1R26Q5T8A7 1209 aaPredicted RBP8.58□□□□□ -1.04
SQLE-204ENST00000520493 Q6ZVU0 165 aa8.58□□□□□ -1.04
SQLE-204ENST00000520493 ADAM32Q8TC27 787 aa8.58□□□□□ -1.04
SQLE-204ENST00000520493 KRTAP4-12Q9BQ66 201 aa8.58□□□□□ -1.04
SQLE-204ENST00000520493 TRIM34Q9BYJ4 488 aa8.58□□□□□ -1.04
SQLE-204ENST00000520493 PGPEP1Q9NXJ5 209 aa8.58□□□□□ -1.04
SQLE-204ENST00000520493 IGF1RP08069 1367 aa8.58□□□□□ -1.04
SQLE-204ENST00000520493 RELBQ01201 579 aa8.57□□□□□ -1.04
SQLE-204ENST00000520493 DZIP3Q86Y13 1208 aaKnown RBP8.57□□□□□ -1.04
SQLE-204ENST00000520493 KCTD15Q96SI1 283 aaPredicted RBP8.57□□□□□ -1.04
SQLE-204ENST00000520493 PRM3Q9NNZ6 103 aa8.57□□□□□ -1.04
SQLE-204ENST00000520493 MBIPQ9NS73 344 aa8.57□□□□□ -1.04
SQLE-204ENST00000520493 DHX9Q08211 1270 aaKnown RBP8.56□□□□□ -1.04
SQLE-204ENST00000520493 NDUFB9Q9Y6M9 179 aa8.56□□□□□ -1.04
SQLE-204ENST00000520493 GPR25O00155 361 aa8.55□□□□□ -1.04
SQLE-204ENST00000520493 ZNF592Q92610 1267 aa8.55□□□□□ -1.04
SQLE-204ENST00000520493 TRIM52Q96A61 297 aa8.55□□□□□ -1.04
SQLE-204ENST00000520493 ACDQ96AP0 544 aa8.55□□□□□ -1.04
SQLE-204ENST00000520493 GJD4Q96KN9 370 aaPredicted RBP8.55□□□□□ -1.04
SQLE-204ENST00000520493 ZBBXA8MT70 800 aa8.54□□□□□ -1.04
SQLE-204ENST00000520493 ZNF330Q9Y3S2 320 aaPredicted RBP8.54□□□□□ -1.04
SQLE-204ENST00000520493 BTBD11A6QL63 1104 aa8.53□□□□□ -1.04
SQLE-204ENST00000520493 MTMR14Q8NCE2 650 aa8.53□□□□□ -1.04
SQLE-204ENST00000520493 RNF217Q8TC41 542 aa8.53□□□□□ -1.04
SQLE-204ENST00000520493 OCSTAMPQ9BR26 566 aa8.53□□□□□ -1.04
SQLE-204ENST00000520493 KRTAP9-9Q9BYP9 154 aa8.53□□□□□ -1.04
SQLE-204ENST00000520493 KRTAP9-4Q9BYQ2 154 aa8.53□□□□□ -1.04
SQLE-204ENST00000520493 ZNF395Q9H8N7 513 aaPredicted RBP8.53□□□□□ -1.04
SQLE-204ENST00000520493 SNRPNP63162 240 aaKnown RBP8.51□□□□□ -1.05
SQLE-204ENST00000520493 SNRKQ9NRH2 765 aa8.51□□□□□ -1.05
SQLE-204ENST00000520493 PCDHB9Q9Y5E1 797 aa8.51□□□□□ -1.05
SQLE-204ENST00000520493 MCCD1P59942 119 aaPredicted RBP8.5□□□□□ -1.05
SQLE-204ENST00000520493 INTS6LQ5JSJ4 861 aaKnown RBP8.5□□□□□ -1.05
SQLE-204ENST00000520493 ZMYM1Q5SVZ6 1142 aa8.5□□□□□ -1.05
SQLE-204ENST00000520493 FOXR1Q6PIV2 292 aa8.5□□□□□ -1.05
SQLE-204ENST00000520493 FBXO45P0C2W1 286 aa8.49□□□□□ -1.05
SQLE-204ENST00000520493 RAB15P59190 212 aa8.49□□□□□ -1.05
SQLE-204ENST00000520493 NR1H3Q13133 447 aa8.49□□□□□ -1.05
SQLE-204ENST00000520493 SEPT12Q8IYM1 358 aa8.49□□□□□ -1.05
SQLE-204ENST00000520493 ZNF837Q96EG3 531 aaPredicted RBP8.49□□□□□ -1.05
SQLE-204ENST00000520493 COL8A1P27658 744 aa8.48□□□□□ -1.05
SQLE-204ENST00000520493 ITGB7P26010 798 aa8.47□□□□□ -1.05
SQLE-204ENST00000520493 CCDC125Q86Z20 511 aa8.47□□□□□ -1.05
SQLE-204ENST00000520493 SEMA6BQ9H3T3 888 aa8.47□□□□□ -1.05
SQLE-204ENST00000520493 RNF20Q5VTR2 975 aa8.46□□□□□ -1.06
SQLE-204ENST00000520493 MKL2Q9ULH7 1088 aa8.46□□□□□ -1.06
SQLE-204ENST00000520493 ESPNB1AK53 854 aa8.45□□□□□ -1.06
SQLE-204ENST00000520493 OIP5O43482 229 aa8.45□□□□□ -1.06
SQLE-204ENST00000520493 RHOQP17081 205 aa8.45□□□□□ -1.06
SQLE-204ENST00000520493 GRIN2CQ14957 1233 aa8.45□□□□□ -1.06
SQLE-204ENST00000520493 RIPOR1Q6ZS17 1223 aa8.45□□□□□ -1.06
SQLE-204ENST00000520493 KRTAP4-8A0A0G2JLE6 195 aa8.44□□□□□ -1.06
SQLE-204ENST00000520493 SCO2A0A1W2PP80 73 aa8.44□□□□□ -1.06
SQLE-204ENST00000520493 ERVH48-1M5A8F1 160 aa8.44□□□□□ -1.06
SQLE-204ENST00000520493 FOXD4L5Q5VV16 416 aaPredicted RBP8.44□□□□□ -1.06
SQLE-204ENST00000520493 LYSMD3Q7Z3D4 306 aa8.44□□□□□ -1.06
SQLE-204ENST00000520493 ALYREFQ86V81 257 aaKnown RBP8.44□□□□□ -1.06
SQLE-204ENST00000520493 TRIM22Q8IYM9 498 aa8.44□□□□□ -1.06
SQLE-204ENST00000520493 GTPBP3Q969Y2 492 aaKnown RBP8.44□□□□□ -1.06
SQLE-204ENST00000520493 RRAGCQ9HB90 399 aa8.44□□□□□ -1.06
SQLE-204ENST00000520493 TBC1D2BQ9UPU7 963 aa8.44□□□□□ -1.06
SQLE-204ENST00000520493 DBN1Q16643 649 aa8.43□□□□□ -1.06
SQLE-204ENST00000520493 PRICKLE2Q7Z3G6 844 aa8.43□□□□□ -1.06
SQLE-204ENST00000520493 ZNF784Q8NCA9 323 aaPredicted RBP8.43□□□□□ -1.06
SQLE-204ENST00000520493 LRRC4BQ9NT99 713 aa8.43□□□□□ -1.06
SQLE-204ENST00000520493 C1QTNF9BB2RNN3 333 aa8.42□□□□□ -1.06
SQLE-204ENST00000520493 MX2P20592 715 aa8.42□□□□□ -1.06
SQLE-204ENST00000520493 GMCL1Q96IK5 515 aa8.42□□□□□ -1.06
SQLE-204ENST00000520493 TMPRSS4Q9NRS4 437 aa8.42□□□□□ -1.06
SQLE-204ENST00000520493 GPR37L1O60883 481 aa8.41□□□□□ -1.06
SQLE-204ENST00000520493 GIGYF1O75420 1035 aaPredicted RBP8.41□□□□□ -1.06
SQLE-204ENST00000520493 EIF4G2P78344 907 aaKnown RBP eCLIP8.41□□□□□ -1.06
SQLE-204ENST00000520493 TRERF1Q96PN7 1200 aa8.41□□□□□ -1.06
SQLE-204ENST00000520493 ESF1Q9H501 851 aaKnown RBP8.41□□□□□ -1.06
SQLE-204ENST00000520493 NSFL1CQ9UNZ2 370 aaKnown RBP8.41□□□□□ -1.06
SQLE-204ENST00000520493 ABL2P42684 1182 aa8.4□□□□□ -1.06
SQLE-204ENST00000520493 DOC2BQ14184 412 aa8.4□□□□□ -1.06
SQLE-204ENST00000520493 MCM6Q14566 821 aa8.4□□□□□ -1.06
SQLE-204ENST00000520493 SUV39H2Q9H5I1 410 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms