RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 FKBP4Q02790 459 aaKnown RBP eCLIP15.09■□□□□ 0.01
USP53-209ENST00000514665 TAF7Q15545 349 aaPredicted RBP15.09■□□□□ 0.01
USP53-209ENST00000514665 PARD3Q8TEW0 1356 aa15.09■□□□□ 0.01
USP53-209ENST00000514665 TPM2P07951 284 aa15.09■□□□□ 0.01
USP53-209ENST00000514665 DDX11Q96FC9 970 aa15.09■□□□□ 0.01
USP53-209ENST00000514665 UGGT2Q9NYU1 1516 aa15.09■□□□□ 0.01
USP53-209ENST00000514665 WASLO00401 505 aaPredicted RBP15.08■□□□□ 0.01
USP53-209ENST00000514665 OLFM4Q6UX06 510 aa15.08■□□□□ 0.01
USP53-209ENST00000514665 AEBP1Q8IUX7 1158 aa15.08■□□□□ 0.01
USP53-209ENST00000514665 KIF1BPQ96EK5 621 aa15.08■□□□□ 0.01
USP53-209ENST00000514665 LRRFIP2Q9Y608 721 aaKnown RBP15.08■□□□□ 0.01
USP53-209ENST00000514665 CCDC83Q8IWF9 413 aa15.08■□□□□ 0
USP53-209ENST00000514665 MBIPQ9NS73 344 aa15.08■□□□□ 0
USP53-209ENST00000514665 RLBP1P12271 317 aa15.08■□□□□ 0
USP53-209ENST00000514665 BMP2KLQ5H9B9 411 aa15.08■□□□□ 0
USP53-209ENST00000514665 ANKRD1Q15327 319 aa15.07■□□□□ 0
USP53-209ENST00000514665 CNNM1Q9NRU3 951 aa15.07■□□□□ 0
USP53-209ENST00000514665 GDPD2Q9HCC8 539 aa15.07■□□□□ 0
USP53-209ENST00000514665 PLEKHH1Q9ULM0 1364 aa15.07■□□□□ 0
USP53-209ENST00000514665 CCDC158Q5M9N0 1113 aa15.07■□□□□ 0
USP53-209ENST00000514665 TTLL5Q6EMB2 1281 aa15.07■□□□□ 0
USP53-209ENST00000514665 PRPF40BQ6NWY9 871 aaKnown RBP15.07■□□□□ 0
USP53-209ENST00000514665 PER1O15534 1290 aaPredicted RBP15.06■□□□□ 0
USP53-209ENST00000514665 C8orf34Q49A92 452 aa15.06■□□□□ 0
USP53-209ENST00000514665 CCDC47Q96A33 483 aaKnown RBP15.06■□□□□ 0
USP53-209ENST00000514665 SPATA32Q96LK8 384 aa15.06■□□□□ 0
USP53-209ENST00000514665 BOLA2Q9H3K6 86 aa15.06■□□□□ 0
USP53-209ENST00000514665 RALGAPBQ86X10 1494 aa15.06■□□□□ 0
USP53-209ENST00000514665 GPS2Q13227 327 aa15.06■□□□□ 0
USP53-209ENST00000514665 TOM1L2Q6ZVM7 507 aa15.06■□□□□ 0
USP53-209ENST00000514665 SPINK5Q9NQ38 1064 aaPredicted RBP15.06■□□□□ 0
USP53-209ENST00000514665 HMGN5P82970 282 aaKnown RBP15.06■□□□□ 0
USP53-209ENST00000514665 ZNF396Q96N95 335 aaPredicted RBP15.06■□□□□ 0
USP53-209ENST00000514665 CEP89Q96ST8 783 aa15.06■□□□□ 0
USP53-209ENST00000514665 GLRX3O76003 335 aaKnown RBP15.06■□□□□ 0
USP53-209ENST00000514665 TTC39AQ5SRH9 613 aa15.06■□□□□ 0
USP53-209ENST00000514665 ZSCAN30Q86W11 494 aa15.05■□□□□ 0
USP53-209ENST00000514665 SART3Q15020 963 aaKnown RBP15.05■□□□□ -0
USP53-209ENST00000514665 FILIP1Q7Z7B0 1213 aa15.05■□□□□ -0
USP53-209ENST00000514665 PRAG1Q86YV5 1406 aa15.05■□□□□ -0
USP53-209ENST00000514665 FLIIQ13045 1269 aa15.05■□□□□ -0
USP53-209ENST00000514665 CEP126Q9P2H0 1117 aa15.05■□□□□ -0
USP53-209ENST00000514665 MPRIPQ6WCQ1 1025 aa15.04■□□□□ -0
USP53-209ENST00000514665 NUP153P49790 1475 aaKnown RBP15.04■□□□□ -0
USP53-209ENST00000514665 CARD14Q9BXL6 1004 aa15.04■□□□□ -0
USP53-209ENST00000514665 CCDC8Q9H0W5 538 aaPredicted RBP15.04■□□□□ -0
USP53-209ENST00000514665 ATP10BO94823 1461 aa15.04■□□□□ -0
USP53-209ENST00000514665 BRPF1P55201 1214 aaPredicted RBP15.04■□□□□ -0
USP53-209ENST00000514665 MAP7D2Q96T17 732 aa15.04■□□□□ -0
USP53-209ENST00000514665 NUP62CLQ9H1M0 184 aa15.04■□□□□ -0
USP53-209ENST00000514665 DHX29Q7Z478 1369 aaKnown RBP15.04■□□□□ -0
USP53-209ENST00000514665 PTCD1O75127 700 aaKnown RBP15.03■□□□□ -0
USP53-209ENST00000514665 CCDC57Q2TAC2 916 aa15.03■□□□□ -0
USP53-209ENST00000514665 KIF6Q6ZMV9 814 aa15.03■□□□□ -0
USP53-209ENST00000514665 ZSCAN31Q96LW9 406 aaPredicted RBP15.03■□□□□ -0
USP53-209ENST00000514665 CAMK4Q16566 473 aa15.03■□□□□ -0
USP53-209ENST00000514665 PRDM11Q9NQV5 511 aa15.03■□□□□ -0
USP53-209ENST00000514665 SPG7Q9UQ90 795 aa15.03■□□□□ -0
USP53-209ENST00000514665 ANXA1P04083 346 aa15.03■□□□□ -0
USP53-209ENST00000514665 CEBPAP49715 358 aaPredicted RBP15.03■□□□□ -0
USP53-209ENST00000514665 SAMD1Q6SPF0 538 aaPredicted RBP15.03■□□□□ -0
USP53-209ENST00000514665 FOXO3O43524 673 aa15.03■□□□□ -0
USP53-209ENST00000514665 SEC24BO95487 1268 aa15.03■□□□□ -0
USP53-209ENST00000514665 XBP1P17861 261 aa15.03■□□□□ -0
USP53-209ENST00000514665 CCDC70Q6NSX1 233 aa15.02■□□□□ -0
USP53-209ENST00000514665 ANKLE2Q86XL3 938 aa15.02■□□□□ -0
USP53-209ENST00000514665 MEIS3Q99687 375 aa15.02■□□□□ -0
USP53-209ENST00000514665 PPP6R1Q9UPN7 881 aa15.02■□□□□ -0
USP53-209ENST00000514665 FAM135AQ9P2D6 1515 aa15.02□□□□□ -0.01
USP53-209ENST00000514665 ARGLU1Q9NWB6 273 aaPredicted RBP15.02□□□□□ -0.01
USP53-209ENST00000514665 RAB11FIP3O75154 756 aa15.02□□□□□ -0.01
USP53-209ENST00000514665 HSP90AB2PQ58FF8 381 aa15.02□□□□□ -0.01
USP53-209ENST00000514665 AMOTL2Q9Y2J4 779 aa15.02□□□□□ -0.01
USP53-209ENST00000514665 UQCRHLA0A096LP55 91 aa15.01□□□□□ -0.01
USP53-209ENST00000514665 UQCRHP07919 91 aa15.01□□□□□ -0.01
USP53-209ENST00000514665 HDAC1Q13547 482 aaPredicted RBP15.01□□□□□ -0.01
USP53-209ENST00000514665 BAG4O95429 457 aaKnown RBP15.01□□□□□ -0.01
USP53-209ENST00000514665 MTERF4Q7Z6M4 381 aaKnown RBP15.01□□□□□ -0.01
USP53-209ENST00000514665 BRMS1Q9HCU9 246 aa15.01□□□□□ -0.01
USP53-209ENST00000514665 DNAAF4Q8WXU2 420 aa15□□□□□ -0.01
USP53-209ENST00000514665 SERPINC1P01008 464 aa15□□□□□ -0.01
USP53-209ENST00000514665 NUCB1Q02818 461 aa15□□□□□ -0.01
USP53-209ENST00000514665 C8orf58Q8NAV2 365 aa15□□□□□ -0.01
USP53-209ENST00000514665 FANCAO15360 1455 aa15□□□□□ -0.01
USP53-209ENST00000514665 NAP1L1P55209 391 aaKnown RBP15□□□□□ -0.01
USP53-209ENST00000514665 TEX35Q5T0J7 233 aa15□□□□□ -0.01
USP53-209ENST00000514665 FAM177A1Q8N128 213 aaPredicted RBP14.99□□□□□ -0.01
USP53-209ENST00000514665 JMYQ8N9B5 988 aa14.99□□□□□ -0.01
USP53-209ENST00000514665 TRIM34Q9BYJ4 488 aa14.99□□□□□ -0.01
USP53-209ENST00000514665 ZRANB1Q9UGI0 708 aa14.99□□□□□ -0.01
USP53-209ENST00000514665 KRT32Q14532 448 aa14.99□□□□□ -0.01
USP53-209ENST00000514665 C16orf71Q8IYS4 520 aaPredicted RBP14.99□□□□□ -0.01
USP53-209ENST00000514665 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.99□□□□□ -0.01
USP53-209ENST00000514665 CFAP45Q9UL16 551 aa14.99□□□□□ -0.01
USP53-209ENST00000514665 SDSP20132 328 aa14.99□□□□□ -0.01
USP53-209ENST00000514665 MAP3K11Q16584 847 aa14.99□□□□□ -0.01
USP53-209ENST00000514665 TTC22Q5TAA0 569 aa14.99□□□□□ -0.01
USP53-209ENST00000514665 IL16Q14005 1332 aa14.98□□□□□ -0.01
USP53-209ENST00000514665 NUP133Q8WUM0 1156 aa14.98□□□□□ -0.01
USP53-209ENST00000514665 RBM27Q9P2N5 1060 aaKnown RBP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 206.1 ms