RNA–Protein interactions for RNA: ENST00000514455.5

RACK1-233, Transcript of receptor for activated C kinase 1, human

TSL 2 BASIC

Gene RACK1, Length 791 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RACK1-233	ENST00000514455	MRS2	Q9HD23	443 aa		13.2	□□□□□ -0.3
RACK1-233	ENST00000514455	RGPD2	P0DJD1	1756 aa		13.2	□□□□□ -0.3
RACK1-233	ENST00000514455	FAM208A	Q9UK61	1670 aa	Known RBP	13.19	□□□□□ -0.3
RACK1-233	ENST00000514455	AEBP1	Q8IUX7	1158 aa		13.19	□□□□□ -0.3
RACK1-233	ENST00000514455	GLI3	P10071	1580 aa		13.19	□□□□□ -0.3
RACK1-233	ENST00000514455	FCHSD2	O94868	740 aa		13.18	□□□□□ -0.3
RACK1-233	ENST00000514455	WDR43	Q15061	677 aa	Known RBP eCLIP	13.18	□□□□□ -0.3
RACK1-233	ENST00000514455	DDB1	Q16531	1140 aa		13.18	□□□□□ -0.3
RACK1-233	ENST00000514455	CCER2	I3L3R5	266 aa		13.17	□□□□□ -0.3
RACK1-233	ENST00000514455	PDE3B	Q13370	1112 aa		13.17	□□□□□ -0.3
RACK1-233	ENST00000514455	ZCRB1	Q8TBF4	217 aa	Known RBP	13.17	□□□□□ -0.3
RACK1-233	ENST00000514455	PNN	Q9H307	717 aa	Known RBP	13.17	□□□□□ -0.3
RACK1-233	ENST00000514455	KDR	P35968	1356 aa		13.17	□□□□□ -0.3
RACK1-233	ENST00000514455	NCAPD2	Q15021	1401 aa		13.16	□□□□□ -0.3
RACK1-233	ENST00000514455	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.16	□□□□□ -0.3
RACK1-233	ENST00000514455	PNISR	Q8TF01	805 aa	Known RBP	13.16	□□□□□ -0.3
RACK1-233	ENST00000514455	ADAMTS8	Q9UP79	889 aa		13.16	□□□□□ -0.3
RACK1-233	ENST00000514455	SPG7	Q9UQ90	795 aa		13.16	□□□□□ -0.3
RACK1-233	ENST00000514455	DISP2	A7MBM2	1401 aa		13.15	□□□□□ -0.3
RACK1-233	ENST00000514455	PRKAR2B	P31323	418 aa		13.15	□□□□□ -0.3
RACK1-233	ENST00000514455	AMOT	Q4VCS5	1084 aa		13.15	□□□□□ -0.3
RACK1-233	ENST00000514455	RSPH6A	Q9H0K4	717 aa		13.15	□□□□□ -0.3
RACK1-233	ENST00000514455	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.15	□□□□□ -0.3
RACK1-233	ENST00000514455	NEFM	P07197	916 aa		13.14	□□□□□ -0.31
RACK1-233	ENST00000514455	KRT27	Q7Z3Y8	459 aa		13.14	□□□□□ -0.31
RACK1-233	ENST00000514455	DDX54	Q8TDD1	881 aa	Known RBP	13.14	□□□□□ -0.31
RACK1-233	ENST00000514455	RGPD1	P0DJD0	1748 aa		13.13	□□□□□ -0.31
RACK1-233	ENST00000514455	MEGF6	O75095	1541 aa		13.13	□□□□□ -0.31
RACK1-233	ENST00000514455	OVOS2	A0A0G2JMS6	1433 aa		13.13	□□□□□ -0.31
RACK1-233	ENST00000514455	MARCH10	Q8NA82	808 aa	Predicted RBP	13.12	□□□□□ -0.31
RACK1-233	ENST00000514455	PHACTR3	Q96KR7	559 aa		13.12	□□□□□ -0.31
RACK1-233	ENST00000514455	PLEKHF1	Q96S99	279 aa		13.12	□□□□□ -0.31
RACK1-233	ENST00000514455	RGS12	O14924	1447 aa		13.12	□□□□□ -0.31
RACK1-233	ENST00000514455	PLEKHG2	Q9H7P9	1386 aa		13.11	□□□□□ -0.31
RACK1-233	ENST00000514455	MTHFSD	Q2M296	383 aa	Known RBP	13.11	□□□□□ -0.31
RACK1-233	ENST00000514455	IFNL2	Q8IZJ0	200 aa		13.11	□□□□□ -0.31
RACK1-233	ENST00000514455	FAM9B	Q8IZU0	186 aa		13.11	□□□□□ -0.31
RACK1-233	ENST00000514455	THSD7A	Q9UPZ6	1657 aa		13.1	□□□□□ -0.31
RACK1-233	ENST00000514455	CYP27B1	O15528	508 aa		13.1	□□□□□ -0.31
RACK1-233	ENST00000514455	FAM182B	Q5T319	152 aa		13.1	□□□□□ -0.31
RACK1-233	ENST00000514455	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.1	□□□□□ -0.31
RACK1-233	ENST00000514455	RUNDC1	Q96C34	613 aa		13.1	□□□□□ -0.31
RACK1-233	ENST00000514455	PCDH11X	Q9BZA7	1347 aa		13.1	□□□□□ -0.31
RACK1-233	ENST00000514455	PCDH11Y	Q9BZA8	1340 aa		13.1	□□□□□ -0.31
RACK1-233	ENST00000514455	C1orf141	Q5JVX7	400 aa		13.09	□□□□□ -0.31
RACK1-233	ENST00000514455	FAM196A	Q6ZSG2	479 aa		13.09	□□□□□ -0.31
RACK1-233	ENST00000514455	CCDC146	Q8IYE0	955 aa		13.09	□□□□□ -0.31
RACK1-233	ENST00000514455	GAS2L2	Q8NHY3	880 aa		13.09	□□□□□ -0.31
RACK1-233	ENST00000514455	PARP4	Q9UKK3	1724 aa	Known RBP	13.09	□□□□□ -0.31
RACK1-233	ENST00000514455	MAPK8IP3	Q9UPT6	1336 aa		13.09	□□□□□ -0.31
RACK1-233	ENST00000514455	KAT6B	Q8WYB5	2073 aa		13.08	□□□□□ -0.32
RACK1-233	ENST00000514455	TNS2	Q63HR2	1409 aa		13.08	□□□□□ -0.32
RACK1-233	ENST00000514455	HSP90AB1	P08238	724 aa	Known RBP	13.08	□□□□□ -0.32
RACK1-233	ENST00000514455	PHKG2	P15735	406 aa		13.08	□□□□□ -0.32
RACK1-233	ENST00000514455	NKX1-1	Q15270	411 aa	Predicted RBP	13.08	□□□□□ -0.32
RACK1-233	ENST00000514455	AKAP4	Q5JQC9	854 aa		13.08	□□□□□ -0.32
RACK1-233	ENST00000514455	BRWD3	Q6RI45	1802 aa		13.07	□□□□□ -0.32
RACK1-233	ENST00000514455	WNK3	Q9BYP7	1800 aa		13.07	□□□□□ -0.32
RACK1-233	ENST00000514455	LRRC37A3	O60309	1634 aa		13.06	□□□□□ -0.32
RACK1-233	ENST00000514455	GNAT3	A8MTJ3	354 aa		13.05	□□□□□ -0.32
RACK1-233	ENST00000514455	APAF1	O14727	1248 aa		13.05	□□□□□ -0.32
RACK1-233	ENST00000514455	TMPO	P42166	694 aa	Known RBP	13.05	□□□□□ -0.32
RACK1-233	ENST00000514455	RIPK4	P57078	832 aa		13.05	□□□□□ -0.32
RACK1-233	ENST00000514455	NFE2L2	Q16236	605 aa		13.05	□□□□□ -0.32
RACK1-233	ENST00000514455	MPRIP	Q6WCQ1	1025 aa		13.05	□□□□□ -0.32
RACK1-233	ENST00000514455	DCAF5	Q96JK2	942 aa		13.05	□□□□□ -0.32
RACK1-233	ENST00000514455	HTATSF1	O43719	755 aa	Known RBP	13.04	□□□□□ -0.32
RACK1-233	ENST00000514455	NEUROD2	Q15784	382 aa		13.04	□□□□□ -0.32
RACK1-233	ENST00000514455	RTF1	Q92541	710 aa	Known RBP	13.04	□□□□□ -0.32
RACK1-233	ENST00000514455	ACSBG1	Q96GR2	724 aa		13.04	□□□□□ -0.32
RACK1-233	ENST00000514455	LGR6	Q9HBX8	967 aa		13.04	□□□□□ -0.32
RACK1-233	ENST00000514455	PKD1L3	Q7Z443	1732 aa		13.04	□□□□□ -0.32
RACK1-233	ENST00000514455	RNMT	O43148	476 aa	Known RBP	13.03	□□□□□ -0.32
RACK1-233	ENST00000514455	PRIM1	P49642	420 aa	Known RBP	13.03	□□□□□ -0.32
RACK1-233	ENST00000514455	RRP7A	Q9Y3A4	280 aa	Known RBP	13.03	□□□□□ -0.32
RACK1-233	ENST00000514455	BCL9	O00512	1426 aa		13.03	□□□□□ -0.32
RACK1-233	ENST00000514455	ERVV-2	B6SEH9	535 aa		13.02	□□□□□ -0.33
RACK1-233	ENST00000514455	KCNQ2	O43526	872 aa		13.02	□□□□□ -0.33
RACK1-233	ENST00000514455	TRIM37	O94972	964 aa		13.02	□□□□□ -0.33
RACK1-233	ENST00000514455	IL17RE	Q8NFR9	667 aa		13.02	□□□□□ -0.33
RACK1-233	ENST00000514455	SYTL4	Q96C24	671 aa	Predicted RBP	13.02	□□□□□ -0.33
RACK1-233	ENST00000514455	MAP3K5	Q99683	1374 aa		13.02	□□□□□ -0.33
RACK1-233	ENST00000514455	CABP4	P57796	275 aa		13.01	□□□□□ -0.33
RACK1-233	ENST00000514455	LMOD3	Q0VAK6	560 aa		13.01	□□□□□ -0.33
RACK1-233	ENST00000514455	SHANK3	Q9BYB0	1731 aa		13.01	□□□□□ -0.33
RACK1-233	ENST00000514455	DCTN1	Q14203	1278 aa		13	□□□□□ -0.33
RACK1-233	ENST00000514455	MCM10	Q7L590	875 aa		13	□□□□□ -0.33
RACK1-233	ENST00000514455	CCDC125	Q86Z20	511 aa		13	□□□□□ -0.33
RACK1-233	ENST00000514455	BCL11B	Q9C0K0	894 aa	Predicted RBP	13	□□□□□ -0.33
RACK1-233	ENST00000514455	SENP3-EIF4A1	A0A087X0R7	540 aa		12.99	□□□□□ -0.33
RACK1-233	ENST00000514455	NCBP3	Q53F19	620 aa	Known RBP	12.99	□□□□□ -0.33
RACK1-233	ENST00000514455	PTF1A	Q7RTS3	328 aa		12.99	□□□□□ -0.33
RACK1-233	ENST00000514455	NFATC2IP	Q8NCF5	419 aa		12.99	□□□□□ -0.33
RACK1-233	ENST00000514455	SLC52A2	Q9HAB3	445 aa		12.99	□□□□□ -0.33
RACK1-233	ENST00000514455	TMOD3	Q9NYL9	352 aa		12.99	□□□□□ -0.33
RACK1-233	ENST00000514455	TEF	Q10587	303 aa		12.98	□□□□□ -0.33
RACK1-233	ENST00000514455	SF3B2	Q13435	895 aa	Known RBP	12.98	□□□□□ -0.33
RACK1-233	ENST00000514455	NGEF	Q8N5V2	710 aa		12.98	□□□□□ -0.33
RACK1-233	ENST00000514455	PIGB	Q92521	554 aa		12.98	□□□□□ -0.33
RACK1-233	ENST00000514455	TRIM35	Q9UPQ4	493 aa		12.98	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms